Rh2DG312000

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
38316166 .. 38335866
19701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG312000.1

Sequence Viewer

Length: 1029 bp
ATGATTGGCCCCAAAGGTTCAGGGCTAGAGAACTGGGACCCCTCTTCTTATTACTACTGCTCCTTCTCTGGAGTTTCATGTGACCACCAATCACGAGTTGTTGCTCTCAACGTGTCCGGTTTGCCTCTGTTTGGCTCGCTTCCGGCGGAGATTGGGCTTCTGAACAAGCTCGTCAACCTCACCATTGCCAACAACAACTTAACAGGGAGTCTTCCCCGGGAAATGGCCAACCTGACTTGTTTAAAGCTCTTGAACATCTCCACCAACTTGTTCGTTGGAAGATTTCCTGGAGAAATCACGATCAGAATGACAGAGCTTGACGTTCTCGACGCCAATAACAACAACTTCACTGGTCCACTTCCGGTAGAGCTCGTCAAACTCAAAAAGATCAAACATCTACATCTTGGAGGGAACTACTTCGCCGGAGAAATTCCCGAAAGTTATTCAAAGATTCAAAGCTTAGAATATTTGGGCCTGCACTTTAACTCGCTTGGCGGAAAGTTTCCGCCCAGCTTGGCTCTGTTGAAGAATCTCAAGGAATTGTACGTTGGTCACGACAACACTTATAGCGGTGGAATTCCACCAGAGTTGGGAACGATGGAGTCGTTGCAAGTGCTTGACATGGCCAGCTGTAACCTCACCGGCACGATTCCGGTCAGTCTAGGCTTTTTGAAGAACTTACACACGTTGTTTCTATATATTAACCGTTTGAGTGGTTATATACATCCACAACTTTCAGGTATGGTGAGTCTGAGGTCTTTGGATCTCTCTGTTAACGAACTCACTGGAGAAATACCAGAAAGTCTCTCGGAGCTCAAGAACCTTACCCTACTCAACCTGTTTACGAACAATTTTTACGGCCCAATACCCAACTTCATCGGCGATCTTCCTCATCTGGAGGTGCTTCATCTTTGGCAGAACAACTTTACATTTGAACTACCTGAGAGTCTTGGCCGGAATGGAAGGCTCGAAGACCTCGATGTAGCCGAGGACTGGACATCTTCTTGTGTCGATCGTATAGAAAATTGA

Protein Analysis

342

Amino Acids

37.72

Weight (kDa)

5.19

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 108 - 236 7.4e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 146, 495, 506, 570
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 3 cut(s) 225, 624, 952
AcsI RAATTY 2 cut(s) 429, 576
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 4 cut(s) 131, 223, 590, 993
AflIII ACRYGT 2 cut(s) 111, 684
AgsI TTSAA 6 cut(s) 253, 447, 455, 526, 673, 935
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 531, 563
AluBI AGCT 8 cut(s) 169, 247, 316, 370, 459, 513, 630, 814
AluI AGCT 8 cut(s) 169, 247, 316, 370, 459, 513, 630, 814
Alw21I GWGCWC 2 cut(s) 372, 816
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 1 cut(s) 771
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 6 cut(s) 7, 225, 472, 624, 859, 952
ApoI RAATTY 2 cut(s) 429, 576
Asp700I GAANNNNTTC 1 cut(s) 416
AspS9I GGNCC 5 cut(s) 8, 37, 353, 472, 860
AsuC2I CCSGG 2 cut(s) 217, 218
AsuHPI GGTGA 3 cut(s) 172, 631, 757
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 2 cut(s) 37, 353
BalI TGGCCA 2 cut(s) 227, 626
BanII GRGCYC 2 cut(s) 372, 816
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 2 cut(s) 203, 978
Bbv12I GWGCWC 2 cut(s) 372, 816
BccI CCATC 1 cut(s) 592
BceAI ACGGC 1 cut(s) 874
BciT130I CCWGG 1 cut(s) 288
BcnI CCSGG 2 cut(s) 217, 218
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 2 cut(s) 26, 662
Bme1390I CCNGG 3 cut(s) 217, 218, 288
Bme18I GGWCC 2 cut(s) 37, 353
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 5 cut(s) 8, 37, 353, 472, 860
BmiI GGNNCC 3 cut(s) 10, 38, 39
BmrFI CCNGG 3 cut(s) 217, 218, 288
BmrI ACTGGG 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 203, 978
BpmI CTGGAG 4 cut(s) 90, 309, 807, 917
BpuEI CTTGAG 2 cut(s) 518, 800
BpuMI CCSGG 2 cut(s) 217, 218
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 3 cut(s) 215, 216, 987
BsaWI WCCGGW 3 cut(s) 116, 361, 652
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 223, 590, 993
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 4 cut(s) 38, 355, 790, 998
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 215, 216, 987
BseGI GGATG 1 cut(s) 724
BseLI CCNNNNNNNGG 4 cut(s) 131, 223, 590, 993
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 743, 933
BseNI ACTGG 4 cut(s) 38, 355, 790, 998
BseYI CCCAGC 1 cut(s) 509
BsgI GTGCAG 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 1015
BshFI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BsiEI CGRYCG 1 cut(s) 1015
BsiHKAI GWGCWC 2 cut(s) 372, 816
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 8 cut(s) 117, 143, 217, 362, 423, 642, 653, 955
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 4 cut(s) 131, 223, 590, 993
BsmAI GTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 372, 816
Bsp143I GATC 5 cut(s) 300, 387, 763, 883, 1012
BspACI CCGC 4 cut(s) 146, 495, 506, 570
BspANI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BspCNI CTCAG 2 cut(s) 744, 934
BspLI GGNNCC 3 cut(s) 10, 38, 39
BspPI GGATC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 641
BsrI ACTGG 4 cut(s) 38, 355, 790, 998
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 3 cut(s) 215, 216, 987
BssMI GATC 5 cut(s) 300, 387, 763, 883, 1012
BssNI GRCGYC 1 cut(s) 330
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 707
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 137, 476, 628
BstDEI CTNAG 3 cut(s) 460, 752, 942
BstF5I GGATG 1 cut(s) 724
BstKTI GATC 5 cut(s) 303, 390, 766, 886, 1015
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 5 cut(s) 300, 387, 763, 883, 1012
BstMCI CGRYCG 1 cut(s) 1015
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 215, 216, 286
BstV2I GAAGAC 2 cut(s) 203, 978
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BsuRI GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
BtsCI GGATG 1 cut(s) 724
BtsIMutI CAGTG 2 cut(s) 348, 783
Cac8I GCNNGC 3 cut(s) 137, 476, 628
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 5 cut(s) 8, 37, 353, 472, 860
Cfr9I CCCGGG 1 cut(s) 216
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 2 cut(s) 78, 622
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 460, 752, 942
DpnI GATC 5 cut(s) 302, 389, 765, 885, 1014
DpnII GATC 5 cut(s) 300, 387, 763, 883, 1012
DraI TTTAAA 1 cut(s) 243
EaeI YGGCCR 3 cut(s) 225, 624, 952
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 3 cut(s) 161, 495, 510
Ecl136II GAGCTC 2 cut(s) 370, 814
Eco24I GRGCYC 2 cut(s) 372, 816
Eco47I GGWCC 2 cut(s) 37, 353
Eco53kI GAGCTC 2 cut(s) 370, 814
Eco88I CYCGRG 1 cut(s) 216
EcoICRI GAGCTC 2 cut(s) 370, 814
EcoO109I RGGNCCY 1 cut(s) 37
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 286
EcoT38I GRGCYC 2 cut(s) 372, 816
FaeI CATG 2 cut(s) 81, 625
FaiI YATR 9 cut(s) 79, 567, 623, 697, 699, 720, 722, 743, 1019
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 77, 621
FokI GGATG 1 cut(s) 711
FriOI GRGCYC 2 cut(s) 372, 816
FspBI CTAG 2 cut(s) 26, 662
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 4 cut(s) 90, 309, 807, 917
HaeIII GGCC 6 cut(s) 9, 227, 474, 626, 861, 954
HapII CCGG 8 cut(s) 117, 143, 217, 362, 423, 642, 653, 955
HgaI GACGC 1 cut(s) 338
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 2 cut(s) 81, 625
HincII GTYRAC 2 cut(s) 175, 775
HindII GTYRAC 2 cut(s) 175, 775
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 7 cut(s) 208, 451, 529, 602, 649, 748, 946
HpaI GTTAAC 1 cut(s) 775
HpaII CCGG 8 cut(s) 117, 143, 217, 362, 423, 642, 653, 955
HphI GGTGA 3 cut(s) 172, 631, 757
Hpy166II GTNNAC 4 cut(s) 175, 356, 775, 843
Hpy188I TCNGA 4 cut(s) 162, 305, 753, 811
Hpy188III TCNNGA 9 cut(s) 69, 93, 250, 298, 326, 434, 554, 817, 896
Hpy8I GTNNAC 4 cut(s) 175, 356, 775, 843
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 2 cut(s) 73, 957
HpyCH4III ACNGT 1 cut(s) 707
HpyCH4IV ACGT 4 cut(s) 111, 321, 546, 686
HpyCH4V TGCA 2 cut(s) 478, 610
HpyF3I CTNAG 3 cut(s) 460, 752, 942
HpySE526I ACGT 4 cut(s) 111, 321, 546, 686
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 2 cut(s) 81, 625
KflI GGGWCCC 1 cut(s) 37
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 5 cut(s) 300, 387, 763, 883, 1012
LmnI GCTCC 2 cut(s) 65, 811
MaeI CTAG 2 cut(s) 26, 662
MaeII ACGT 4 cut(s) 111, 321, 546, 686
MaeIII GTNAC 3 cut(s) 80, 551, 632
MalI GATC 5 cut(s) 302, 389, 765, 885, 1014
MboI GATC 5 cut(s) 300, 387, 763, 883, 1012
MboII GAAGA 8 cut(s) 36, 203, 291, 538, 685, 878, 983, 993
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 2 cut(s) 372, 816
MlsI TGGCCA 2 cut(s) 227, 626
MluCI AATT 5 cut(s) 429, 539, 576, 850, 1024
MluNI TGGCCA 2 cut(s) 227, 626
MlyI GAGTC 4 cut(s) 217, 611, 757, 955
MmeI TCCRAC 1 cut(s) 256
Mox20I TGGCCA 2 cut(s) 227, 626
MroXI GAANNNNTTC 1 cut(s) 416
MscI TGGCCA 2 cut(s) 227, 626
MseI TTAA 5 cut(s) 200, 242, 483, 702, 774
Msp20I TGGCCA 2 cut(s) 227, 626
MspA1I CMGCKG 1 cut(s) 630
MspI CCGG 8 cut(s) 117, 143, 217, 362, 423, 642, 653, 955
MspR9I CCNGG 3 cut(s) 217, 218, 288
MvaI CCWGG 1 cut(s) 288
NciI CCSGG 2 cut(s) 217, 218
NdeII GATC 5 cut(s) 300, 387, 763, 883, 1012
NlaIII CATG 2 cut(s) 81, 625
NlaIV GGNNCC 3 cut(s) 10, 38, 39
NmeAIII GCCGAG 1 cut(s) 1012
NmuCI GTSAC 2 cut(s) 80, 551
PcsI WCGNNNNNNNCGW 4 cut(s) 552, 602, 975, 984
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 3 cut(s) 451, 529, 649
PfoI TCCNGGA 1 cut(s) 286
Ple19I CGATCG 1 cut(s) 1015
PleI GAGTC 4 cut(s) 216, 610, 756, 954
PpsI GAGTC 4 cut(s) 216, 610, 756, 954
PpuMI RGGWCCY 1 cut(s) 37
Psp124BI GAGCTC 2 cut(s) 372, 816
Psp5II RGGWCCY 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 10, 38, 39
PspPI GGNCC 5 cut(s) 8, 37, 353, 472, 860
PspPPI RGGWCCY 1 cut(s) 37
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
PsuI RGATCY 1 cut(s) 763
PvuI CGATCG 1 cut(s) 1015
PvuII CAGCTG 1 cut(s) 630
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacI GAGCTC 2 cut(s) 372, 816
SaqAI TTAA 5 cut(s) 200, 242, 483, 702, 774
Sau3AI GATC 5 cut(s) 300, 387, 763, 883, 1012
Sau96I GGNCC 5 cut(s) 8, 37, 353, 472, 860
SchI GAGTC 4 cut(s) 217, 611, 757, 955
ScrFI CCNGG 3 cut(s) 217, 218, 288
SduI GDGCHC 2 cut(s) 372, 816
SinI GGWCC 2 cut(s) 37, 353
SmaI CCCGGG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 533, 815
SmoI CTYRAG 2 cut(s) 533, 815
Sse9I AATT 5 cut(s) 429, 539, 576, 850, 1024
SsiI CCGC 4 cut(s) 146, 495, 506, 570
SspI AATATT 1 cut(s) 467
SspMI CTAG 2 cut(s) 26, 662
SstI GAGCTC 2 cut(s) 372, 816
StyD4I CCNGG 3 cut(s) 215, 216, 286
TaaI ACNGT 1 cut(s) 707
TaiI ACGT 4 cut(s) 114, 324, 549, 689
TaqI TCGA 4 cut(s) 327, 969, 978, 1011
TasI AATT 5 cut(s) 429, 539, 576, 850, 1024
TfiI GAWTC 3 cut(s) 451, 529, 649
Tru1I TTAA 5 cut(s) 200, 242, 483, 702, 774
Tru9I TTAA 5 cut(s) 200, 242, 483, 702, 774
TscAI CASTG 2 cut(s) 355, 790
TseFI GTSAC 2 cut(s) 80, 551
Tsp45I GTSAC 2 cut(s) 80, 551
TspDTI ATGAA 3 cut(s) 66, 865, 896
TspMI CCCGGG 1 cut(s) 216
TspRI CASTG 2 cut(s) 355, 790
VpaK11BI GGWCC 2 cut(s) 37, 353
XapI RAATTY 2 cut(s) 429, 576
XmaI CCCGGG 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 2 cut(s) 26, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.