Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

22951595 .. 22969495

Gene Structure 17901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0230300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAAAGCATGTGTTGAATGGTAATAGCCCAATATACTTACATTATGTCCGAAGGAGTGGTGCTATTCATGTTGAACTTGGGTCAAGAGAGAATGGTATTTCTTTGACATGGGAGGACTTGTGGGTCGGAGTAGGTGATGGGAAAAGTGGGCAGAAGATGATTTTGCAGGGGCTTACTGGGTTTGCTCAACCTGGTGAGGTTTTGGCTATAATGGGTCCTTCTGGCTGTGGCAAATCTACCCTTTTGGATGCTTTGGCAGGAAGGCTAAGTTCAAGCGCACAGCAGAGAGGAAAGATCTTAATCAATGGCAGGAAAGAAACTCTTGCCTACGGAACCTCGGCATATGTGACACAAGATGACACGCTAATGACAACATTAACAGTAAGGGAAGTTGTGAATTACTCGGCACAACTACAACTCCCTAACTCCATGTCGAAAACAGAAAAGAAGGAAAGAGCAGAGACGACGATAAGGGAGATGGGTTTGCAAGACTCCATGGACACAAGAATTGGAGGTTGGAGCAGAAAAGGCCTCAGTGGTGGACAAAAAAGAATAGTTAGCATCTGCATTGAAATCTTAACTCGTCCGAAGCTTCTATTCCTCGATGAGCCTAGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

207

Amino Acids

22.56

Weight (kDa)

9.25

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	59 - 206	2.8e-28	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AgsI	TTSAA	4 cut(s)	19, 77, 276, 575
AjnI	CCWGG	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	2 cut(s)	595, 618
AluI	AGCT	2 cut(s)	595, 618
Alw26I	GTCTC	1 cut(s)	458
AoxI	GGCC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	149, 209
AvaII	GGWCC	1 cut(s)	218
BccI	CCATC	2 cut(s)	134, 475
BciT130I	CCWGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	615, 622
BglII	AGATCT	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	2 cut(s)	219, 337
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	241, 573
BmuI	ACTGGG	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	339, 498
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 405, 435
Bse1I	ACTGG	1 cut(s)	184
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	2 cut(s)	339, 498
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	458
BsmBI	CGTCTC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	498
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	219, 337
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	339, 498
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	269, 536
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	534
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	544
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	218
CsiI	ACCWGGT	1 cut(s)	193
CviAII	CATG	5 cut(s)	11, 71, 111, 433, 499
CviJI	RGCY	9 cut(s)	30, 175, 209, 228, 268, 534, 595, 613, 618
CviKI_1	RGCY	9 cut(s)	30, 175, 209, 228, 268, 534, 595, 613, 618
DdeI	CTNAG	2 cut(s)	269, 536
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	498
Eco147I	AGGCCT	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	5 cut(s)	14, 74, 114, 436, 502
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	5 cut(s)	10, 70, 110, 432, 498
FauNDI	CATATG	1 cut(s)	346
FokI	GGATG	1 cut(s)	263
FspBI	CTAG	2 cut(s)	615, 622
GlaI	GCGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	534
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	5 cut(s)	14, 74, 114, 436, 502
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	494
HphI	GGTGA	2 cut(s)	149, 209
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	53, 131, 591
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	545
Hpy99I	CGWCG	1 cut(s)	472
HpyAV	CCTTC	4 cut(s)	48, 231, 258, 445
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	3 cut(s)	169, 490, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	2 cut(s)	269, 536
Hsp92II	CATG	5 cut(s)	14, 74, 114, 436, 502
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	522
LpnPI	CCDG	7 cut(s)	155, 165, 180, 207, 210, 246, 298
LweI	GCATC	2 cut(s)	241, 573
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	2 cut(s)	615, 622
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	2 cut(s)	400, 510
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	109, 500
MnlI	CCTC	7 cut(s)	109, 193, 284, 349, 509, 545, 614
MseI	TTAA	3 cut(s)	302, 380, 581
MslI	CAYNNNNRTG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	531
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	5 cut(s)	14, 74, 114, 436, 502
NlaIV	GGNNCC	2 cut(s)	219, 337
NmeAIII	GCCGAG	2 cut(s)	320, 386
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	14
PceI	AGGCCT	1 cut(s)	534
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	219, 337
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	302, 380, 581
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	7 cut(s)	139, 196, 204, 341, 520, 597, 620
SexAI	ACCWGGT	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	241, 573
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	400, 510
SseBI	AGGCCT	1 cut(s)	534
SspMI	CTAG	2 cut(s)	615, 622
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	437, 606
TasI	AATT	2 cut(s)	400, 510
Tru1I	TTAA	3 cut(s)	302, 380, 581
Tru9I	TTAA	3 cut(s)	302, 380, 581
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	2 cut(s)	615, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.