RchiOBHm_Chr2g0173321

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000461
Physical Location & Seq
Reverse (-)
86353700 .. 86354760
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54054

Sequence Viewer

Length: 168 bp
ATGGAAACAAGACTTTGTAACATGAATGATATTCAATTTGTGTACCAGCAGATCTACCCAACACTATTAGCTGCACATGAGAAAATAGGAGTCGTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTGGAAACCATGTAAACCCTAGTTTTGGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

55

Amino Acids

6.18

Weight (kDa)

5.74

Isoelectric Point (pI)

12.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 24 - 49 2.2e-06 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 134, 158
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 123
BfaI CTAG 1 cut(s) 153
BglII AGATCT 1 cut(s) 51
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmsI GCATC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 158
BseLI CCNNNNNNNGG 2 cut(s) 134, 158
BseXI GCAGC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 134, 158
Bsp143I GATC 1 cut(s) 51
BssMI GATC 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 105
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 110
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 22, 77, 143
CviJI RGCY 1 cut(s) 71
CviKI_1 RGCY 1 cut(s) 71
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
FaeI CATG 3 cut(s) 25, 80, 146
FaiI YATR 3 cut(s) 23, 78, 144
FatI CATG 3 cut(s) 21, 76, 142
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 25, 80, 146
HinfI GANTC 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 43, 148
Hpy8I GTNNAC 2 cut(s) 43, 148
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 74, 101
Hsp92II CATG 3 cut(s) 25, 80, 146
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 1 cut(s) 59
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 88
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MflI RGATCY 1 cut(s) 51
MluCI AATT 1 cut(s) 35
MlyI GAGTC 1 cut(s) 99
MseI TTAA 1 cut(s) 166
MslI CAYNNNNRTG 1 cut(s) 120
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 25, 80, 146
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 51
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 166
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 99
SetI ASST 2 cut(s) 73, 124
SfaNI GCATC 1 cut(s) 88
SgeI CNNG 7 cut(s) 21, 34, 58, 89, 131, 146, 155
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 1 cut(s) 35
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 105
TasI AATT 1 cut(s) 35
Tru1I TTAA 1 cut(s) 166
Tru9I TTAA 1 cut(s) 166
TscAI CASTG 1 cut(s) 110
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 110
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.