pycom05g13420

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
16970839 .. 16971201
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13420.1

Sequence Viewer

Length: 363 bp
ATGGGCAAAGGTGGTGCTGGGGTTGTGACGGTTGTCTACCGGGCAACCATGCCAAGCGGCCTCGTCATAGCAATCAAACAGCTAGTAGGATCATCAAGTAATACAGCAAAAAGGGATCATGGATTTGCAGCGGAAATTAAGACGCTGGGACGAATCAAACACCGAAACATAGTGAGGCTTTTGGGATACATGTCGAACAATAAGGACTCTAAGTTGTTGTTGTACGAGTACATGCCTAATGGTAGCTTGGGAAAAATATTGCATGGGGAAATGGAGGGGAGTGGCAGTGGGAGAGGAGGTATAAAATTGCAGTGGAGGCTGCAAAGGGATTGTGTTATCTGCACCATGACTGTTCACCCCTGA

Protein Analysis

121

Amino Acids

13.0

Weight (kDa)

10.08

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 98 2.9e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 5 - 88 5.8e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AciI CCGC 2 cut(s) 57, 131
AclWI GGATC 2 cut(s) 97, 123
AfaI GTAC 2 cut(s) 224, 230
AflIII ACRYGT 1 cut(s) 189
AluBI AGCT 2 cut(s) 82, 246
AluI AGCT 2 cut(s) 82, 246
AlwI GGATC 2 cut(s) 97, 123
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 128, 319
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 347
BbvI GCAGC 2 cut(s) 140, 306
BciVI GTATCC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 3 cut(s) 58, 129, 320
BlsI GCNGC 3 cut(s) 59, 130, 321
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BoxI GACNNNNGTC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 41
BsaXI ACNNNNNCTCC 4 cut(s) 271, 283, 301, 313
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 140, 306
BseYI CCCAGC 2 cut(s) 17, 145
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 89, 115
BspACI CCGC 2 cut(s) 57, 131
BspANI GGCC 1 cut(s) 60
BspPI GGATC 2 cut(s) 97, 123
BssMI GATC 2 cut(s) 89, 115
Bst4CI ACNGT 2 cut(s) 31, 352
BstDEI CTNAG 1 cut(s) 210
BstKTI GATC 2 cut(s) 92, 118
BstMBI GATC 2 cut(s) 89, 115
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNSI RCATGY 2 cut(s) 193, 235
BstPAI GACNNNNGTC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 140, 306
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 60
BtsI GCAGTG 2 cut(s) 292, 317
BtsIMutI CAGTG 2 cut(s) 292, 317
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 223, 229
CviAII CATG 6 cut(s) 49, 119, 190, 232, 263, 346
CviJI RGCY 5 cut(s) 60, 82, 178, 246, 319
CviKI_1 RGCY 5 cut(s) 60, 82, 178, 246, 319
CviQI GTAC 2 cut(s) 223, 229
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 91, 117
DpnII GATC 2 cut(s) 89, 115
FaeI CATG 6 cut(s) 52, 122, 193, 235, 266, 349
FaiI YATR 9 cut(s) 50, 68, 120, 170, 191, 233, 264, 302, 347
FaqI GGGAC 1 cut(s) 162
FatI CATG 6 cut(s) 48, 118, 189, 231, 262, 345
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 3 cut(s) 58, 129, 320
Fsp4HI GCNGC 3 cut(s) 58, 129, 320
FspBI CTAG 1 cut(s) 83
GluI GCNGC 3 cut(s) 58, 129, 320
GsaI CCCAGC 2 cut(s) 21, 149
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 151
Hin1II CATG 6 cut(s) 52, 122, 193, 235, 266, 349
HinfI GANTC 2 cut(s) 153, 206
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 37, 355
Hpy8I GTNNAC 2 cut(s) 37, 355
HpyCH4III ACNGT 2 cut(s) 31, 352
HpyCH4V TGCA 5 cut(s) 128, 262, 310, 322, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 6 cut(s) 52, 122, 193, 235, 266, 349
Kzo9I GATC 2 cut(s) 89, 115
LpnPI CCDG 3 cut(s) 3, 53, 131
Lsp1109I GCAGC 2 cut(s) 140, 306
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 91, 117
MboI GATC 2 cut(s) 89, 115
MluCI AATT 2 cut(s) 135, 305
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 6 cut(s) 71, 168, 268, 287, 290, 309
MseI TTAA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 131
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 316
NciI CCSGG 1 cut(s) 41
NdeII GATC 2 cut(s) 89, 115
NlaIII CATG 6 cut(s) 52, 122, 193, 235, 266, 349
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 2 cut(s) 193, 235
PciI ACATGT 1 cut(s) 189
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 3 cut(s) 59, 130, 321
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PscI ACATGT 1 cut(s) 189
PshAI GACNNNNGTC 1 cut(s) 32
PspFI CCCAGC 2 cut(s) 17, 145
RsaI GTAC 2 cut(s) 224, 230
RsaNI GTAC 2 cut(s) 223, 229
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 58, 129, 320
Sau3AI GATC 2 cut(s) 89, 115
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 41
SetI ASST 4 cut(s) 13, 84, 248, 301
Sse9I AATT 2 cut(s) 135, 305
SsiI CCGC 2 cut(s) 57, 131
SspI AATATT 1 cut(s) 258
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 31, 352
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 135, 305
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 292, 317
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 2 cut(s) 128, 319
Tsp45I GTSAC 1 cut(s) 25
TspRI CASTG 2 cut(s) 292, 317
XceI RCATGY 2 cut(s) 193, 235
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.