Rmu_co8360703.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8360703.1
Physical Location & Seq
Reverse (-)
128 .. 448
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8360703.1_g000001.1.cds

Sequence Viewer

Length: 321 bp
atgaagtttcgccattgcttgtccggagaatctgtgtcaagtgcctcactcaaaaccctcatgctttctaataatcaaatttctggaagaatcccatccgccattggaaatcttcaccatttacgatatcttgagctggaaatgaacaaattcaccgggcaagtactagatgaaatcttcaatttacagaggctagtggaactcaacatcagcaccaacaattttggtggtgaaattccagcttctatctctggttgttcctctctaaagtccctagattttagtcaaaacaattttgttgggaaatcgcaagagggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

6.82

Isoelectric Point (pI)

30.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 23
AciI CCGC 1 cut(s) 99
AcsI RAATTY 3 cut(s) 78, 149, 234
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 181
AluBI AGCT 2 cut(s) 136, 242
AluI AGCT 2 cut(s) 136, 242
Aor13HI TCCGGA 1 cut(s) 23
ApoI RAATTY 3 cut(s) 78, 149, 234
Asp700I GAANNNNTTC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 107, 145, 242
BccI CCATC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 157
BfaI CTAG 3 cut(s) 167, 194, 275
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bse3DI GCAATG 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 23
BseGI GGATG 1 cut(s) 95
BseMI GCAATG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 24, 156
BslFI GGGAC 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 256
Bsp13I TCCGGA 1 cut(s) 23
BspACI CCGC 1 cut(s) 99
BspEI TCCGGA 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 95
Csp6I GTAC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 61
CviJI RGCY 3 cut(s) 136, 193, 242
CviKI_1 RGCY 3 cut(s) 136, 193, 242
CviQI GTAC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 88
Eco32I GATATC 1 cut(s) 128
EcoRV GATATC 1 cut(s) 128
FaeI CATG 1 cut(s) 64
FaiI YATR 1 cut(s) 62
FaqI GGGAC 1 cut(s) 256
FatI CATG 1 cut(s) 60
FokI GGATG 1 cut(s) 82
FspBI CTAG 3 cut(s) 167, 194, 275
HapII CCGG 2 cut(s) 24, 156
Hin1II CATG 1 cut(s) 64
HinfI GANTC 2 cut(s) 29, 90
HpaII CCGG 2 cut(s) 24, 156
HphI GGTGA 3 cut(s) 107, 145, 242
Hpy188III TCNNGA 3 cut(s) 24, 84, 131
Hsp92II CATG 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 23
LpnPI CCDG 6 cut(s) 37, 69, 122, 169, 237, 252
MaeI CTAG 3 cut(s) 167, 194, 275
MboII GAAGA 3 cut(s) 99, 104, 169
MluCI AATT 6 cut(s) 78, 149, 181, 220, 234, 292
MnlI CCTC 5 cut(s) 55, 68, 183, 271, 307
MroI TCCGGA 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 149
MspI CCGG 2 cut(s) 24, 156
MspR9I CCNGG 1 cut(s) 157
NciI CCSGG 1 cut(s) 157
NlaIII CATG 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 29, 90
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 157
SetI ASST 2 cut(s) 138, 244
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 6 cut(s) 78, 149, 181, 220, 234, 292
SsiI CCGC 1 cut(s) 99
SspMI CTAG 3 cut(s) 167, 194, 275
StyD4I CCNGG 1 cut(s) 155
TasI AATT 6 cut(s) 78, 149, 181, 220, 234, 292
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 29, 90
TspDTI ATGAA 3 cut(s) 17, 158, 186
XapI RAATTY 3 cut(s) 78, 149, 234
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 3 cut(s) 167, 194, 275
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.