RchiOBHm_Chr2g0119041

Leucine Rich Repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000461
Physical Location & Seq
Forward (+)
31334995 .. 31335951
957 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49179

Sequence Viewer

Length: 957 bp
ATGGATAATCACTTTTTTGGGCCGATTCCGGAGGAATTGGGCCGGTGCAAGTCGCTAGTCAAAATGAGATTGATGAAAAACACACTCAACGGGACTATTCCTGCTGGAATCTTCAGCTTACCTGATGTGAACATAATTGAGCTGGCTGATAATTACTTATCCGGAGAACTCCCGATGCAGATGTCTGGTGCCTGGCTCGAAACCCTCACGCTTTCTAATAATCAAATTTCTGGAAGAATCCCATCCGCCATTGGAAATCTTCCCCATTTACAAATTCTTCATCTGCAAATGAACAGATTCTCCGGGAAAGTACAGGAGGAAATCTTCAATTTACCGTGGCTAGCGGAACTCAACATCAGGACCAACAATTTTGGTGGTGAAATTCCAGCTTCTATCTCTGGTTGTTCCTCTCTAACGTCCCTAGATTTCAGTCAAAACAATTTTGTTGGGGAAATCCCAAGAGGGATAGGCAAACTGAAAGTAATTGAGTTGCTTAATTTCTCTAGGAACAAGCTAACAGGTCCAATACCTGTGGAATTCACATACATGGCGAGCCTCAAAACTTTGGATCTCTCCTATAACAATTTCATTGGTAGGATCCCAACAGGTGGTCAGTTTTTAGAGCTTAACGCTTCTTTTGAAGGAAATCCACACCTGTCTTCGCACAGCTCTAATAAAGTCATCATCGCTGGACTCACTGGAGCTCTGCTAACTTTGCTACTCATGCTGCTTCTCATATATGTCCTTATCAGGGTTTATAGGAAGAGAAAGAACAGTAAGATTCAGAAATGTAGCTCTTGGAACCTCACAGTTTTCCAAGTACAGCTGGATCTCAACATAGAGGACGTTCTCCAGTGTCTAAACGCACTTACGCACAGAACATTATTGGTAGGGGCGGTGCTGGAGATGTCTACCAAGGGACAATGCCAAACGGTGATGTCGCCATCAAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

318

Amino Acids

35.2

Weight (kDa)

8.25

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 66 - 98 2.1e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 78 - 193 2.8e-08 Leucine-rich repeat region
LRR_8 PF13855 88 - 148 8.1e-06 Leucine rich repeat
LRR_8 PF13855 137 - 196 1.5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 608
AccI GTMKAC 1 cut(s) 911
AccIII TCCGGA 2 cut(s) 28, 161
AciI CCGC 3 cut(s) 246, 344, 896
AclWI GGATC 4 cut(s) 576, 592, 605, 837
AcsI RAATTY 4 cut(s) 225, 273, 381, 536
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 2 cut(s) 312, 822
AfiI CCNNNNNNNGG 2 cut(s) 608, 751
AgsI TTSAA 2 cut(s) 328, 641
AjnI CCWGG 1 cut(s) 191
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 9 cut(s) 117, 142, 389, 514, 625, 669, 704, 795, 826
AluI AGCT 9 cut(s) 117, 142, 389, 514, 625, 669, 704, 795, 826
Alw21I GWGCWC 1 cut(s) 706
AlwI GGATC 4 cut(s) 576, 592, 605, 837
Aor13HI TCCGGA 2 cut(s) 28, 161
AoxI GGCC 2 cut(s) 20, 40
ApeKI GCWGC 1 cut(s) 727
ApoI RAATTY 4 cut(s) 225, 273, 381, 536
Asp700I GAANNNNTTC 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 20, 40, 360, 521
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 389, 946
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 2 cut(s) 360, 521
BamHI GGATCC 1 cut(s) 597
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 1 cut(s) 714
BccI CCATC 2 cut(s) 250, 952
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 304
BfaI CTAG 4 cut(s) 56, 341, 422, 504
BisI GCNGC 1 cut(s) 728
BlsI GCNGC 1 cut(s) 729
Bme1390I CCNGG 2 cut(s) 193, 304
Bme18I GGWCC 2 cut(s) 360, 521
BmgT120I GGNCC 4 cut(s) 20, 40, 360, 521
BmiI GGNNCC 3 cut(s) 190, 599, 803
BmrFI CCNGG 2 cut(s) 193, 304
BmsI GCATC 1 cut(s) 165
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 3 cut(s) 720, 836, 923
BpuMI CCSGG 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 335, 915
BsaWI WCCGGW 2 cut(s) 28, 161
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 608, 751
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 703, 853
BseAI TCCGGA 2 cut(s) 28, 161
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 335, 915
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 608, 751
BseNI ACTGG 2 cut(s) 703, 853
BseXI GCAGC 1 cut(s) 714
BshFI GGCC 2 cut(s) 22, 42
BshNI GGYRCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 4 cut(s) 29, 43, 162, 303
BslFI GGGAC 3 cut(s) 106, 403, 933
BslI CCNNNNNNNGG 2 cut(s) 608, 751
BsmFI GGGAC 3 cut(s) 106, 403, 933
BsnI GGCC 2 cut(s) 22, 42
Bsp1286I GDGCHC 1 cut(s) 706
Bsp13I TCCGGA 2 cut(s) 28, 161
Bsp143I GATC 3 cut(s) 568, 597, 829
BspACI CCGC 3 cut(s) 246, 344, 896
BspANI GGCC 2 cut(s) 22, 42
BspEI TCCGGA 2 cut(s) 28, 161
BspLI GGNNCC 3 cut(s) 190, 599, 803
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 4 cut(s) 576, 592, 605, 837
BspT107I GGYRCC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 2 cut(s) 703, 853
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 335, 915
BssMI GATC 3 cut(s) 568, 597, 829
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 4 cut(s) 336, 776, 811, 934
Bst6I CTCTTC 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 144, 342, 553
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 242
BstKTI GATC 3 cut(s) 571, 600, 832
BstMBI GATC 3 cut(s) 568, 597, 829
BstMWI GCNNNNNNNGC 2 cut(s) 715, 724
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 302
BstV1I GCAGC 1 cut(s) 714
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 3 cut(s) 568, 597, 829
BstYI RGATCY 3 cut(s) 568, 597, 829
BsuRI GGCC 2 cut(s) 22, 42
BtgI CCRYGG 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 670
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 696, 860
Cac8I GCNNGC 3 cut(s) 144, 342, 553
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 20, 40, 360, 521
Csp6I GTAC 2 cut(s) 311, 821
CspCI CAANNNNNGTGG 4 cut(s) 355, 390, 513, 548
CviAII CATG 2 cut(s) 547, 724
CviQI GTAC 2 cut(s) 311, 821
DpnI GATC 3 cut(s) 570, 599, 831
DpnII GATC 3 cut(s) 568, 597, 829
Eam1104I CTCTTC 1 cut(s) 758
EarI CTCTTC 1 cut(s) 758
EciI GGCGGA 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 2 cut(s) 360, 521
Eco53kI GAGCTC 1 cut(s) 704
Eco57I CTGAAG 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 536
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 915
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 2 cut(s) 550, 727
FaqI GGGAC 3 cut(s) 106, 403, 933
FatI CATG 2 cut(s) 546, 723
FblI GTMKAC 1 cut(s) 911
Fnu4HI GCNGC 1 cut(s) 728
FokI GGATG 1 cut(s) 229
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 1 cut(s) 728
FspBI CTAG 4 cut(s) 56, 341, 422, 504
GluI GCNGC 1 cut(s) 728
GsuI CTGGAG 3 cut(s) 720, 836, 923
HaeIII GGCC 2 cut(s) 22, 42
HapII CCGG 4 cut(s) 29, 43, 162, 303
Hin1II CATG 2 cut(s) 550, 727
HinfI GANTC 6 cut(s) 25, 108, 237, 297, 693, 781
HpaII CCGG 4 cut(s) 29, 43, 162, 303
HphI GGTGA 2 cut(s) 389, 946
Hpy166II GTNNAC 2 cut(s) 130, 912
Hpy188I TCNGA 1 cut(s) 786
Hpy188III TCNNGA 5 cut(s) 29, 162, 172, 231, 358
Hpy8I GTNNAC 2 cut(s) 130, 912
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 4 cut(s) 336, 776, 811, 934
HpyCH4IV ACGT 2 cut(s) 416, 846
HpyCH4V TGCA 3 cut(s) 48, 178, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 715, 724
HpySE526I ACGT 2 cut(s) 416, 846
Hsp92II CATG 2 cut(s) 550, 727
Kpn2I TCCGGA 2 cut(s) 28, 161
Kzo9I GATC 3 cut(s) 568, 597, 829
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 1 cut(s) 714
LweI GCATC 1 cut(s) 165
MaeI CTAG 4 cut(s) 56, 341, 422, 504
MaeII ACGT 2 cut(s) 416, 846
MalI GATC 3 cut(s) 570, 599, 831
MboI GATC 3 cut(s) 568, 597, 829
MboII GAAGA 7 cut(s) 103, 246, 251, 269, 316, 651, 775
MflI RGATCY 3 cut(s) 568, 597, 829
MhlI GDGCHC 1 cut(s) 706
MlyI GAGTC 1 cut(s) 687
MnlI CCTC 8 cut(s) 25, 215, 310, 418, 455, 566, 815, 835
MroI TCCGGA 2 cut(s) 28, 161
MroXI GAANNNNTTC 1 cut(s) 296
MseI TTAA 2 cut(s) 495, 627
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 826
MspI CCGG 4 cut(s) 29, 43, 162, 303
MspR9I CCNGG 2 cut(s) 193, 304
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 715, 724
NciI CCSGG 1 cut(s) 304
NdeII GATC 3 cut(s) 568, 597, 829
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 550, 727
NlaIV GGNNCC 3 cut(s) 190, 599, 803
PdmI GAANNNNTTC 1 cut(s) 296
PfeI GAWTC 5 cut(s) 25, 108, 237, 297, 781
PflMI CCANNNNNTGG 1 cut(s) 608
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 1 cut(s) 729
PleI GAGTC 1 cut(s) 687
PpsI GAGTC 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 190, 599, 803
PspPI GGNCC 4 cut(s) 20, 40, 360, 521
PsuI RGATCY 3 cut(s) 568, 597, 829
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 2 cut(s) 312, 822
RsaNI GTAC 2 cut(s) 311, 821
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 495, 627
SatI GCNGC 1 cut(s) 728
Sau3AI GATC 3 cut(s) 568, 597, 829
Sau96I GGNCC 4 cut(s) 20, 40, 360, 521
SchI GAGTC 1 cut(s) 687
ScrFI CCNGG 2 cut(s) 193, 304
SduI GDGCHC 1 cut(s) 706
SfaNI GCATC 1 cut(s) 165
SinI GGWCC 2 cut(s) 360, 521
SmiMI CAYNNNNRTG 1 cut(s) 545
SsiI CCGC 3 cut(s) 246, 344, 896
SspMI CTAG 4 cut(s) 56, 341, 422, 504
SstI GAGCTC 1 cut(s) 706
StyD4I CCNGG 2 cut(s) 191, 302
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 4 cut(s) 336, 776, 811, 934
TaiI ACGT 2 cut(s) 419, 849
TaqI TCGA 1 cut(s) 198
TatI WGTACW 2 cut(s) 310, 820
TfiI GAWTC 5 cut(s) 25, 108, 237, 297, 781
Tru1I TTAA 2 cut(s) 495, 627
Tru9I TTAA 2 cut(s) 495, 627
TscAI CASTG 2 cut(s) 703, 860
TseI GCWGC 1 cut(s) 727
TspDTI ATGAA 4 cut(s) 89, 269, 305, 577
TspRI CASTG 2 cut(s) 703, 860
Van91I CCANNNNNTGG 1 cut(s) 608
VpaK11BI GGWCC 2 cut(s) 360, 521
XapI RAATTY 4 cut(s) 225, 273, 381, 536
XmiI GTMKAC 1 cut(s) 911
XmnI GAANNNNTTC 1 cut(s) 296
XspI CTAG 4 cut(s) 56, 341, 422, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.