RchiOBHm_Chr4g0421131

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000461
Physical Location & Seq
Forward (+)
46813559 .. 46815178
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39079

Sequence Viewer

Length: 174 bp
ATGGCCGCCCTACTTTGGGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATCTTCAGAAGAAAATGGGAGCGTGCTGCGAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAGTAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

57

Amino Acids

6.97

Weight (kDa)

9.36

Isoelectric Point (pI)

76.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 15, 16
AlwI GGATC 1 cut(s) 137
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 103
BglII AGATCT 1 cut(s) 90
BisI GCNGC 2 cut(s) 6, 117
BlsI GCNGC 2 cut(s) 7, 118
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 16
Bse118I RCCGGY 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 15, 16
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 15, 16
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 90, 142
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 2 cut(s) 90, 142
Bst4CI ACNGT 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 114, 167
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 2 cut(s) 93, 145
BstMBI GATC 2 cut(s) 90, 142
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 114, 167
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 46
CviJI RGCY 2 cut(s) 5, 165
CviKI_1 RGCY 2 cut(s) 5, 165
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 92, 144
DpnII GATC 2 cut(s) 90, 142
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 79
FaiI YATR 2 cut(s) 51, 148
Fnu4HI GCNGC 2 cut(s) 6, 117
Fsp4HI GCNGC 2 cut(s) 6, 117
GluI GCNGC 2 cut(s) 6, 117
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 71
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 30
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 90, 142
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 1 cut(s) 165
Lsp1109I GCAGC 1 cut(s) 103
MalI GATC 2 cut(s) 92, 144
MboI GATC 2 cut(s) 90, 142
MboII GAAGA 4 cut(s) 85, 100, 111, 133
MflI RGATCY 1 cut(s) 90
MluCI AATT 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 3 cut(s) 39, 57, 60
MroNI GCCGGC 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 1 cut(s) 156
MspI CCGG 1 cut(s) 166
NaeI GCCGGC 1 cut(s) 167
NdeII GATC 2 cut(s) 90, 142
NgoMIV GCCGGC 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 7, 118
PspPI GGNCC 1 cut(s) 46
PsuI RGATCY 1 cut(s) 90
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 2 cut(s) 6, 117
Sau3AI GATC 2 cut(s) 90, 142
Sau96I GGNCC 1 cut(s) 46
SetI ASST 1 cut(s) 31
SgeI CNNG 2 cut(s) 125, 164
SinI GGWCC 1 cut(s) 46
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 6
TaaI ACNGT 1 cut(s) 161
TasI AATT 1 cut(s) 23
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.