Rh2AG277800

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
33360000 .. 33361951
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG277800.1

Sequence Viewer

Length: 615 bp
ATGCCATCCTCGTTGGACTCTGGTGGCTCTGGAGCTCTGCTAGCTATGCTACTCATGTTGCTTATAAGGATAAGGGTTTATAGGAAGAGAAAGATCAGAGAGATTGAGAAAAGTGGCTCTTGGAATCTCACAGTTTTCCAAGTACAGATTAATCTCAATATAGAGGACATTCTCCAGTGTGTAAATGCAGAGAACATTATCGGCAGGGGCGGTGCTGGAGTTGTCTACAGGGGGACAATGCCAAACGGTGATGATGTCGCCATCAAAAGGTTGCAGAGGAATCAGGGATTTTCGGCTGAAATTAAAACTTTGGGACAAATCAAGCACCGGAATATAGCGTCGTTGTTGGGGTACATGTCTAATAAGGACACTAATTTGTTGATGTATGAGTACATGCCTAATGATGCTGAGTACATAATCCATTATGGCCACCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAACGAAATGAAGATCTTCAGAAGAAAATGGGAGCGTGTTGCGAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAGTAGCCGGCACTAA

Protein Analysis

204

Amino Acids

23.38

Weight (kDa)

9.18

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 63 - 134 3.5e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 64 - 135 1.1e-08 Protein kinase domain
DUF707 PF05212 135 - 188 2e-07 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AccI GTMKAC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 448
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 520
AfaI GTAC 4 cut(s) 144, 353, 392, 413
AfiI CCNNNNNNNGG 3 cut(s) 267, 439, 440
AflIII ACRYGT 1 cut(s) 354
AluBI AGCT 2 cut(s) 35, 44
AluI AGCT 2 cut(s) 35, 44
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 1 cut(s) 578
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 1 cut(s) 427
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 446, 487
AsuHPI GGTGA 1 cut(s) 260
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 2 cut(s) 446, 487
BalI TGGCCA 1 cut(s) 429
BanII GRGCYC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 2 cut(s) 13, 269
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 226
BglII AGATCT 1 cut(s) 531
Bme18I GGWCC 2 cut(s) 446, 487
BmgT120I GGNCC 2 cut(s) 446, 487
BmsI GCATC 1 cut(s) 394
BmtI GCTAGC 1 cut(s) 44
BpmI CTGGAG 3 cut(s) 51, 158, 237
BsaWI WCCGGW 2 cut(s) 327, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 439, 440
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 448
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 3 cut(s) 267, 439, 440
BseMII CTCAG 2 cut(s) 399, 485
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 520
BshFI GGCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 328, 449, 607
BslFI GGGAC 2 cut(s) 247, 327
BslI CCNNNNNNNGG 3 cut(s) 267, 439, 440
BsmFI GGGAC 2 cut(s) 247, 327
BsnI GGCC 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 3 cut(s) 93, 531, 583
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 2 cut(s) 400, 484
BspEI TCCGGA 1 cut(s) 448
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 1 cut(s) 578
BsrFI RCCGGY 1 cut(s) 606
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 606
BssMI GATC 3 cut(s) 93, 531, 583
Bst4CI ACNGT 3 cut(s) 133, 248, 602
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 42, 608
BstDEI CTNAG 2 cut(s) 408, 471
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 3 cut(s) 96, 534, 586
BstMBI GATC 3 cut(s) 93, 531, 583
BstMWI GCNNNNNNNGC 2 cut(s) 41, 46
BstNSI RCATGY 2 cut(s) 358, 397
BstSFI CTRYAG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 1 cut(s) 429
BtsCI GGATG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 42, 608
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 2 cut(s) 446, 487
CseI GACGC 1 cut(s) 327
Csp6I GTAC 4 cut(s) 143, 352, 391, 412
CviAII CATG 3 cut(s) 55, 355, 394
CviJI RGCY 7 cut(s) 27, 35, 44, 117, 296, 429, 606
CviKI_1 RGCY 7 cut(s) 27, 35, 44, 117, 296, 429, 606
CviQI GTAC 4 cut(s) 143, 352, 391, 412
DdeI CTNAG 2 cut(s) 408, 471
DpnI GATC 3 cut(s) 95, 533, 585
DpnII GATC 3 cut(s) 93, 531, 583
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 446, 487
Eco53kI GAGCTC 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 3 cut(s) 58, 358, 397
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FaqI GGGAC 2 cut(s) 247, 327
FatI CATG 3 cut(s) 54, 354, 393
FblI GTMKAC 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 37
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 3 cut(s) 51, 158, 237
HaeIII GGCC 1 cut(s) 429
HapII CCGG 3 cut(s) 328, 449, 607
HgaI GACGC 1 cut(s) 327
Hin1II CATG 3 cut(s) 58, 358, 397
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 4 cut(s) 17, 124, 280, 512
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 3 cut(s) 328, 449, 607
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 226, 598
Hpy188I TCNGA 2 cut(s) 98, 539
Hpy188III TCNNGA 2 cut(s) 30, 449
Hpy8I GTNNAC 2 cut(s) 226, 598
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 3 cut(s) 133, 248, 602
HpyCH4V TGCA 3 cut(s) 188, 274, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 46
HpyF3I CTNAG 2 cut(s) 408, 471
Hsp92II CATG 3 cut(s) 58, 358, 397
Kpn2I TCCGGA 1 cut(s) 448
KroI GCCGGC 1 cut(s) 606
KroNI GCCGGC 1 cut(s) 608
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 3 cut(s) 93, 531, 583
LmnI GCTCC 2 cut(s) 32, 550
LweI GCATC 1 cut(s) 394
MaeI CTAG 1 cut(s) 41
MalI GATC 3 cut(s) 95, 533, 585
MboI GATC 3 cut(s) 93, 531, 583
MboII GAAGA 5 cut(s) 97, 526, 541, 552, 574
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 3 cut(s) 300, 373, 464
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 7 cut(s) 19, 157, 270, 437, 480, 498, 501
Mox20I TGGCCA 1 cut(s) 429
MroI TCCGGA 1 cut(s) 448
MroNI GCCGGC 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 533
MscI TGGCCA 1 cut(s) 429
MseI TTAA 3 cut(s) 150, 303, 597
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 3 cut(s) 328, 449, 607
MwoI GCNNNNNNNGC 2 cut(s) 41, 46
NaeI GCCGGC 1 cut(s) 608
NdeII GATC 3 cut(s) 93, 531, 583
NgoMIV GCCGGC 1 cut(s) 606
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 3 cut(s) 58, 358, 397
NspI RCATGY 2 cut(s) 358, 397
PciI ACATGT 1 cut(s) 354
PdiI GCCGGC 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 3 cut(s) 124, 280, 512
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PscI ACATGT 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 150
PsiI TTATAA 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 446, 487
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 4 cut(s) 144, 353, 392, 413
RsaNI GTAC 4 cut(s) 143, 352, 391, 412
SacI GAGCTC 1 cut(s) 37
SaqAI TTAA 3 cut(s) 150, 303, 597
Sau3AI GATC 3 cut(s) 93, 531, 583
Sau96I GGNCC 2 cut(s) 446, 487
SchI GAGTC 1 cut(s) 11
SduI GDGCHC 1 cut(s) 37
SetI ASST 5 cut(s) 37, 46, 272, 448, 472
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 2 cut(s) 446, 487
Sse9I AATT 3 cut(s) 300, 373, 464
SsiI CCGC 1 cut(s) 210
SspMI CTAG 1 cut(s) 41
SstI GAGCTC 1 cut(s) 37
TaaI ACNGT 3 cut(s) 133, 248, 602
TasI AATT 3 cut(s) 300, 373, 464
TatI WGTACW 3 cut(s) 142, 390, 411
TfiI GAWTC 3 cut(s) 124, 280, 512
Tru1I TTAA 3 cut(s) 150, 303, 597
Tru9I TTAA 3 cut(s) 150, 303, 597
TscAI CASTG 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 542
TspRI CASTG 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 446, 487
VspI ATTAAT 1 cut(s) 150
XceI RCATGY 2 cut(s) 358, 397
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.