Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

57079414 .. 57082487

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGGTACTGGTAGGCTCCCGTTTTTGGCATAATCTCCTCCTCATTTCTTTTATTTTCCTTTTCGTTCCACAATGTTGTTTCTCCGTTGGTGACCTTGACGCACTGTTGATGCTCAAGAAAGCCATGATTGGCCCCAAAGGTTCAGGGCTAGAGAACTGGGATCCCTCTTCTCATTACTACTGCTCCTTCTCTGGAGTTTCATGTGACCACCAATCACGAGTTGTTGCTCTCAACGTGTCCAGTTTGCCTCTGTTTAATTGGCTCGCTTCCGGCGGAGATTGGGCTTCTGAACAAGCTAAGCTCGCCAATCTCAAAAAGCTCAAACATCTGCATCTTGGCGGGAATTGCTTTACTGGAGAAATTCCGAATAATTATTCAGATATTCATAGCTTGGAGTATCTAGGCCTCAACGGTATCGGGCTCACTGGAAAGTTCCCTCCCAGCTTGGCTCTGTTGAAGAATATGAAGGAATTGTACGTTGGTTACTGCAATACTTATATCGGTGGAATTCCACCTGAGTTGGGAACGATGGAGTCGTTGCAAGTGCTTGACATGGTCAGCTGTAACCTCACCGGCACGATTCCGGTCAGTCTAGGCTTTTTGAAGAACTTACGCGCGTTGTTTCTACAGATAAACCGTTTCAGTGGTTATATACCTCCACAACTTTCAGGTATGGTGAGTCTGACGTCTTTGGATCTCTCTATTAACGAACTCACAGGAGAAATACCAGAAAGTCTCTCAGAGCTCAAGAACCTTACCCTACTCAACCTGTATAAGAACAATTTTTACGGCCCGATACCCAACTTCATTGGCGATCTTCCTCATCTGGAGGTGCTTCAACTTTGGGAGAACAACTTTACATTTGAACTACCTGAGAGTCTTGGCCGGAACGGAAGGTTCAAAGACCTCGATGTAGCCGGTAACCACCTCACCGGGTTCATTCCTTGGAATTTGGGCAAAGGAGGGGGCTTAAAGACGTTGATTCTGAAGGAGAACCACTTCTTTGGTCCAATTCCAGAGGCATTGAGTCTGTGCAAGTCGCTAGCCAAACTCAGCTTGATGAAAAACACGCTCAACGGGACTATTCCTGCCGGAATCTTCAGCTTACCTGATTTGAACATGATTGAGCTCAATGATAATTACTTCTTGTCCGGAGAACTTCCGATGCAGATGTCGGCTGCCTCACTTGAAATCCTTACACTATCCCGGAATCAGATTTCTGGAAAAATCCCATCCACCATCGGAACCCTCAAAAACTTACAACTTCTTTTGCTAGACGCGCGGGAACAGATTCTCTGGGCAGTTACCAACAGAAATCTTCAGTTTACCATTGCTAATTTCTCGTGGAACAACCTAACAGGTCCAATACCTGGGGAATTCATATACATGGCGAGCCTCACAACTTTGGATCTCTCCTATAACAATTTCATTGGAAGGATCCCAACCGGAGGTCAGTTTTTATGGTTGAATGCTTCGTTTGAAGGAAATCCCAATCTGTGTTCGCCGGAAAAGGTGTTATGCAGCTCTGATAATCACCCACGACCTCGAGACCATAAAGTCATCACCGTTGGACTCACTGGAGCTCTGCTAACTTTGCTACTCATGCCGCTTCTTATATATGTAGTTATCAGGGTTTATAGGAAGAGGAAGACCACAAAGATAGAGAAATGTGGCTCTTGGAAGCTAACAGTTTTCCAAGTACAGCTCGATCTCAACATAGAGGACGTTCTCCAGTATCTCAAAGCAGAGAACATTATCGGCAGGGGTGGTGCTAGAGTTGTCTATCGGGGGACGATGCCAAATGATGGTGATGTTGCAATCAAACAGCTACATCATAGGGATCAGGGATTTTCAGCTGAAATTAAAACATTGGGAAAAATCAAGCACCAAAATATAGTGCGGCTGTTGGGATACATGTTGAACAAGGACACGAATTTGTTGCTGTACGAGTACATGCCTAATGGAAGGCATTTGGAGTGGGAAATGAGGTACAAGAATGCTGTGGAAGCTGCCAAGGGATTGTGTTATCTCCACCATGACTGTTCGCCTCTGATTATACACAGGGATGTAAAATCCCATAACATCTTGCTGGACTCTAACTTAGAAGCCCATGTTGCTGATTTTGGGCTTGCCAAGTACTTCCAAGGACCAACAGATTGCATGTCTTCGCTTGCTGGTACCCTTGGTTACATTGCCCCAGAGTACGGATGCACCCTGAAAGTGGATGAGAAAATCGATGTGTACGGCTTTGGTGTGGTTCTGCTGGAACTAGTAACAGGGAGGAGACCAGTGGTGGAACTAGTCGAAGAACCTGTGAACCTAGTAAGTTGGGTAAGGAAAACCACATCAGAAATCCCTCAGTCATCCACTGCATCATCTGTACTTGCAGTTGTGGACTCCAGGCTCAGTGGGTTCCCATTGGCAGGTGTCGAGCATGTGTTCAAGATAGCAATGATGTGCGTTGAGAATCACAGCTCTGCAAGACCTTCGATGAGGGAAGTTGTCTACTTGCTCACTAATCCTCGTCCTTCTGCTCCAGGCATGACAAACCCTTACACATTACGTATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

857

Amino Acids

95.14

Weight (kDa)

7.07

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 69	1.1e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	99 - 212	5.1e-10	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	581 - 835	1.9e-31	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	582 - 835	1.8e-35	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2414
AasI	GACNNNNNNGTC	1 cut(s)	1556
AatII	GACGTC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	2414
Acc65I	GGTACC	1 cut(s)	2177
AccB1I	GGYRCC	1 cut(s)	2177
AccB7I	CCANNNNNTGG	2 cut(s)	1370, 1805
AccI	GTMKAC	1 cut(s)	2505
AccII	CGCG	4 cut(s)	615, 617, 1280, 1282
AccIII	TCCGGA	1 cut(s)	1151
AciI	CCGC	5 cut(s)	273, 339, 1282, 1607, 1900
AclWI	GGATC	7 cut(s)	155, 168, 702, 1416, 1432, 1445, 1848
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	5 cut(s)	360, 507, 949, 1376, 1933
AcuI	CTGAAG	3 cut(s)	1007, 1084, 1304
AcyI	GRCGYC	1 cut(s)	686
AfiI	CCNNNNNNNGG	8 cut(s)	24, 521, 1370, 1448, 1805, 2204, 2221, 2423
AflIII	ACRYGT	2 cut(s)	234, 1914
AhlI	ACTAGT	2 cut(s)	2269, 2299
AjnI	CCWGG	3 cut(s)	1369, 2399, 2536
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
Alw21I	GWGCWC	3 cut(s)	747, 1131, 1585
Alw26I	GTCTC	3 cut(s)	740, 1542, 2278
AlwI	GGATC	7 cut(s)	155, 168, 702, 1416, 1432, 1445, 1848
Ama87I	CYCGRG	1 cut(s)	1545
Aor13HI	TCCGGA	1 cut(s)	1151
AoxI	GGCC	4 cut(s)	130, 403, 790, 883
ApeKI	GCWGC	3 cut(s)	1178, 1521, 2009
ApoI	RAATTY	5 cut(s)	360, 507, 949, 1376, 1933
Asp700I	GAANNNNTTC	2 cut(s)	998, 1290
Asp718I	GGTACC	1 cut(s)	2177
AspLEI	GCGC	2 cut(s)	617, 1282
AspS9I	GGNCC	5 cut(s)	131, 791, 1007, 1361, 2147
AsuC2I	CCSGG	2 cut(s)	934, 1207
AsuHPI	GGTGA	7 cut(s)	101, 562, 688, 922, 1526, 1555, 1820
AsuNHI	GCTAGC	1 cut(s)	1042
AvaI	CYCGRG	1 cut(s)	1545
AvaII	GGWCC	3 cut(s)	1007, 1361, 2147
BamHI	GGATCC	2 cut(s)	160, 1437
BanI	GGYRCC	1 cut(s)	2177
BanII	GRGCYC	4 cut(s)	423, 747, 1131, 1585
BarI	GAAGNNNNNNTAC	2 cut(s)	458, 490
BauI	CACGAG	2 cut(s)	216, 1342
BbsI	GAAGAC	2 cut(s)	1655, 2157
Bbv12I	GWGCWC	3 cut(s)	747, 1131, 1585
BbvI	GCAGC	3 cut(s)	1165, 1533, 1996
BccI	CCATC	4 cut(s)	523, 1240, 1247, 1799
BceAI	ACGGC	2 cut(s)	805, 2260
BcgI	CGANNNNNNTGC	4 cut(s)	1921, 1955, 2469, 2503
BciT130I	CCWGG	3 cut(s)	1371, 2401, 2538
BciVI	GTATCC	1 cut(s)	1904
BcnI	CCSGG	2 cut(s)	934, 1207
BcoDI	GTCTC	3 cut(s)	740, 1542, 2278
BcuI	ACTAGT	2 cut(s)	2269, 2299
BfaI	CTAG	9 cut(s)	149, 401, 593, 1043, 1274, 1773, 2270, 2300, 2321
BfmI	CTRYAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	2414
BfuI	GTATCC	1 cut(s)	1904
BisI	GCNGC	5 cut(s)	1179, 1522, 1607, 1901, 2010
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	5 cut(s)	1180, 1523, 1608, 1902, 2011
BmcAI	AGTACT	1 cut(s)	2138
Bme1390I	CCNGG	5 cut(s)	934, 1207, 1371, 2401, 2538
Bme18I	GGWCC	3 cut(s)	1007, 1361, 2147
BmeT110I	CYCGRG	1 cut(s)	1545
BmgT120I	GGNCC	5 cut(s)	131, 791, 1007, 1361, 2147
BmiI	GGNNCC	7 cut(s)	16, 133, 162, 1246, 1439, 2179, 2414
BmrFI	CCNGG	5 cut(s)	934, 1207, 1371, 2401, 2538
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	6 cut(s)	99, 340, 1155, 1785, 2198, 2381
BmtI	GCTAGC	1 cut(s)	1046
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	2 cut(s)	1655, 2157
BpmI	CTGGAG	7 cut(s)	213, 375, 848, 1599, 1715, 2383, 2520
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	98, 731
BpuMI	CCSGG	2 cut(s)	934, 1207
Bsa29I	ATCGAT	1 cut(s)	2235
BsaAI	YACGTR	1 cut(s)	2564
BsaHI	GRCGYC	1 cut(s)	686
BsaI	GGTCTC	2 cut(s)	1542, 2278
BsaJI	CCNNGG	5 cut(s)	944, 1370, 2013, 2143, 2182
BsaWI	WCCGGW	3 cut(s)	583, 1151, 1445
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	8 cut(s)	24, 521, 1370, 1448, 1805, 2204, 2221, 2423
Bse118I	RCCGGY	2 cut(s)	572, 917
Bse1I	ACTGG	8 cut(s)	12, 161, 240, 358, 430, 1582, 1732, 2288
Bse3DI	GCAATG	3 cut(s)	1329, 2190, 2457
BseAI	TCCGGA	1 cut(s)	1151
BseBI	CCWGG	3 cut(s)	1371, 2401, 2538
BseCI	ATCGAT	1 cut(s)	2235
BseDI	CCNNGG	5 cut(s)	944, 1370, 2013, 2143, 2182
BseGI	GGATG	5 cut(s)	1232, 2071, 2213, 2230, 2363
BseLI	CCNNNNNNNGG	8 cut(s)	24, 521, 1370, 1448, 1805, 2204, 2221, 2423
BseMI	GCAATG	3 cut(s)	1329, 2190, 2457
BseMII	CTCAG	6 cut(s)	507, 753, 864, 1066, 2372, 2419
BseNI	ACTGG	8 cut(s)	12, 161, 240, 358, 430, 1582, 1732, 2288
BseRI	GAGGAG	3 cut(s)	26, 29, 2296
BseXI	GCAGC	3 cut(s)	1165, 1533, 1996
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	4 cut(s)	615, 617, 1280, 1282
BshFI	GGCC	4 cut(s)	132, 405, 792, 885
BshNI	GGYRCC	1 cut(s)	2177
BshVI	ATCGAT	1 cut(s)	2235
BsiHKAI	GWGCWC	3 cut(s)	747, 1131, 1585
BsiHKCI	CYCGRG	1 cut(s)	1545
BslFI	GGGAC	2 cut(s)	1093, 1804
BslI	CCNNNNNNNGG	8 cut(s)	24, 521, 1370, 1448, 1805, 2204, 2221, 2423
BsmAI	GTCTC	3 cut(s)	740, 1542, 2278
BsmFI	GGGAC	2 cut(s)	1093, 1804
BsmI	GAATGC	2 cut(s)	1474, 2002
BsnI	GGCC	4 cut(s)	132, 405, 792, 885
Bso31I	GGTCTC	2 cut(s)	1542, 2278
BsoBI	CYCGRG	1 cut(s)	1545
Bsp1286I	GDGCHC	4 cut(s)	423, 747, 1131, 1585
Bsp13I	TCCGGA	1 cut(s)	1151
Bsp143I	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	5 cut(s)	273, 339, 1282, 1607, 1900
BspANI	GGCC	4 cut(s)	132, 405, 792, 885
BspCNI	CTCAG	6 cut(s)	508, 752, 865, 1065, 2371, 2418
BspDI	ATCGAT	1 cut(s)	2235
BspEI	TCCGGA	1 cut(s)	1151
BspFNI	CGCG	4 cut(s)	615, 617, 1280, 1282
BspLI	GGNNCC	7 cut(s)	16, 133, 162, 1246, 1439, 2179, 2414
BspMI	ACCTGC	1 cut(s)	2414
BspOI	GCTAGC	1 cut(s)	1046
BspPI	GGATC	7 cut(s)	155, 168, 702, 1416, 1432, 1445, 1848
BspT107I	GGYRCC	1 cut(s)	2177
BspTNI	GGTCTC	2 cut(s)	1542, 2278
BsrDI	GCAATG	3 cut(s)	1329, 2190, 2457
BsrFI	RCCGGY	2 cut(s)	572, 917
BsrI	ACTGG	8 cut(s)	12, 161, 240, 358, 430, 1582, 1732, 2288
BssAI	RCCGGY	2 cut(s)	572, 917
BssECI	CCNNGG	5 cut(s)	944, 1370, 2013, 2143, 2182
BssMI	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
BssNI	GRCGYC	1 cut(s)	686
BssSI	CACGAG	2 cut(s)	216, 1342
BssT1I	CCWWGG	4 cut(s)	944, 2013, 2143, 2182
Bst2BI	CACGAG	2 cut(s)	216, 1342
Bst2UI	CCWGG	3 cut(s)	1371, 2401, 2538
Bst4CI	ACNGT	6 cut(s)	105, 413, 638, 1567, 1690, 2042
Bst6I	CTCTTC	2 cut(s)	172, 1637
BstACI	GRCGYC	1 cut(s)	686
BstBAI	YACGTR	1 cut(s)	2564
BstC8I	GCNNGC	6 cut(s)	264, 303, 1044, 1393, 2130, 2172
BstDEI	CTNAG	8 cut(s)	297, 516, 739, 873, 1052, 2101, 2358, 2405
BstEII	GGTNACC	2 cut(s)	89, 920
BstF5I	GGATG	5 cut(s)	1232, 2071, 2213, 2230, 2363
BstFNI	CGCG	4 cut(s)	615, 617, 1280, 1282
BstHHI	GCGC	2 cut(s)	617, 1282
BstKTI	GATC	7 cut(s)	163, 697, 817, 1411, 1440, 1711, 1843
BstMAI	GTCTC	3 cut(s)	740, 1542, 2278
BstMBI	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
BstMWI	GCNNNNNNNGC	7 cut(s)	302, 345, 1279, 1594, 1603, 2006, 2114
BstNI	CCWGG	3 cut(s)	1371, 2401, 2538
BstNSI	RCATGY	4 cut(s)	1918, 1957, 2164, 2438
BstPI	GGTNACC	2 cut(s)	89, 920
BstSCI	CCNGG	5 cut(s)	932, 1205, 1369, 2399, 2536
BstSFI	CTRYAG	1 cut(s)	626
BstSNI	TACGTA	1 cut(s)	2564
BstUI	CGCG	4 cut(s)	615, 617, 1280, 1282
BstV1I	GCAGC	3 cut(s)	1165, 1533, 1996
BstV2I	GAAGAC	2 cut(s)	1655, 2157
BstX2I	RGATCY	4 cut(s)	160, 694, 1408, 1437
BstXI	CCANNNNNNTGG	1 cut(s)	1004
BstYI	RGATCY	4 cut(s)	160, 694, 1408, 1437
Bsu15I	ATCGAT	1 cut(s)	2235
BsuI	GTATCC	1 cut(s)	1904
BsuRI	GGCC	4 cut(s)	132, 405, 792, 885
BsuTUI	ATCGAT	1 cut(s)	2235
BtsCI	GGATG	5 cut(s)	1232, 2071, 2213, 2230, 2363
BtsI	GCAGTG	1 cut(s)	2367
BtsIMutI	CAGTG	7 cut(s)	101, 423, 649, 1575, 2295, 2367, 2413
BveI	ACCTGC	1 cut(s)	2414
Cac8I	GCNNGC	6 cut(s)	264, 303, 1044, 1393, 2130, 2172
CfoI	GCGC	2 cut(s)	617, 1282
Cfr10I	RCCGGY	2 cut(s)	572, 917
Cfr13I	GGNCC	5 cut(s)	131, 791, 1007, 1361, 2147
ClaI	ATCGAT	1 cut(s)	2235
CseI	GACGC	2 cut(s)	107, 1286
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
DdeI	CTNAG	8 cut(s)	297, 516, 739, 873, 1052, 2101, 2358, 2405
DpnI	GATC	7 cut(s)	162, 696, 816, 1410, 1439, 1710, 1842
DpnII	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
DrdI	GACNNNNNNGTC	1 cut(s)	1556
DseDI	GACNNNNNNGTC	1 cut(s)	1556
EaeI	YGGCCR	1 cut(s)	883
Eam1104I	CTCTTC	2 cut(s)	172, 1637
EarI	CTCTTC	2 cut(s)	172, 1637
EciI	GGCGGA	1 cut(s)	288
Ecl136II	GAGCTC	3 cut(s)	745, 1129, 1583
Eco105I	TACGTA	1 cut(s)	2564
Eco130I	CCWWGG	4 cut(s)	944, 2013, 2143, 2182
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	4 cut(s)	423, 747, 1131, 1585
Eco31I	GGTCTC	2 cut(s)	1542, 2278
Eco47I	GGWCC	3 cut(s)	1007, 1361, 2147
Eco53kI	GAGCTC	3 cut(s)	745, 1129, 1583
Eco57I	CTGAAG	3 cut(s)	1007, 1084, 1304
Eco88I	CYCGRG	1 cut(s)	1545
Eco91I	GGTNACC	2 cut(s)	89, 920
EcoICRI	GAGCTC	3 cut(s)	745, 1129, 1583
EcoO65I	GGTNACC	2 cut(s)	89, 920
EcoRI	GAATTC	2 cut(s)	507, 1376
EcoRII	CCWGG	3 cut(s)	1369, 2399, 2536
EcoT14I	CCWWGG	4 cut(s)	944, 2013, 2143, 2182
EcoT38I	GRGCYC	4 cut(s)	423, 747, 1131, 1585
ErhI	CCWWGG	4 cut(s)	944, 2013, 2143, 2182
FaqI	GGGAC	2 cut(s)	1093, 1804
FauI	CCCGC	2 cut(s)	332, 1275
FblI	GTMKAC	1 cut(s)	2505
Fnu4HI	GCNGC	5 cut(s)	1179, 1522, 1607, 1901, 2010
FokI	GGATG	5 cut(s)	1219, 2078, 2220, 2237, 2350
FriOI	GRGCYC	4 cut(s)	423, 747, 1131, 1585
Fsp4HI	GCNGC	5 cut(s)	1179, 1522, 1607, 1901, 2010
FspBI	CTAG	9 cut(s)	149, 401, 593, 1043, 1274, 1773, 2270, 2300, 2321
GlaI	GCGC	2 cut(s)	616, 1281
GluI	GCNGC	5 cut(s)	1179, 1522, 1607, 1901, 2010
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	7 cut(s)	213, 375, 848, 1599, 1715, 2383, 2520
HaeIII	GGCC	4 cut(s)	132, 405, 792, 885
HgaI	GACGC	2 cut(s)	107, 1286
HhaI	GCGC	2 cut(s)	617, 1282
Hin1I	GRCGYC	1 cut(s)	686
Hin6I	GCGC	2 cut(s)	615, 1280
HinP1I	GCGC	2 cut(s)	615, 1280
HphI	GGTGA	7 cut(s)	101, 562, 688, 922, 1526, 1555, 1820
Hpy166II	GTNNAC	5 cut(s)	1326, 2242, 2317, 2395, 2506
Hpy8I	GTNNAC	5 cut(s)	1326, 2242, 2317, 2395, 2506
HpyAV	CCTTC	9 cut(s)	196, 460, 888, 982, 1428, 1475, 1959, 2496, 2538
HpyCH4III	ACNGT	6 cut(s)	105, 413, 638, 1567, 1690, 2042
HpyCH4IV	ACGT	6 cut(s)	234, 477, 686, 977, 1725, 2563
HpyF10VI	GCNNNNNNNGC	7 cut(s)	302, 345, 1279, 1594, 1603, 2006, 2114
HpyF3I	CTNAG	8 cut(s)	297, 516, 739, 873, 1052, 2101, 2358, 2405
HpySE526I	ACGT	6 cut(s)	234, 477, 686, 977, 1725, 2563
Hsp92I	GRCGYC	1 cut(s)	686
HspAI	GCGC	2 cut(s)	615, 1280
Kpn2I	TCCGGA	1 cut(s)	1151
KpnI	GGTACC	1 cut(s)	2181
Kzo9I	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
LmnI	GCTCC	4 cut(s)	20, 188, 1580, 2539
Lsp1109I	GCAGC	3 cut(s)	1165, 1533, 1996
LweI	GCATC	6 cut(s)	99, 340, 1155, 1785, 2198, 2381
MaeI	CTAG	9 cut(s)	149, 401, 593, 1043, 1274, 1773, 2270, 2300, 2321
MaeII	ACGT	6 cut(s)	234, 477, 686, 977, 1725, 2563
MaeIII	GTNAC	8 cut(s)	89, 203, 482, 563, 920, 1303, 2186, 2272
MalI	GATC	7 cut(s)	162, 696, 816, 1410, 1439, 1710, 1842
MboI	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
MflI	RGATCY	4 cut(s)	160, 694, 1408, 1437
MhlI	GDGCHC	4 cut(s)	423, 747, 1131, 1585
MlyI	GAGTC	7 cut(s)	542, 688, 886, 1036, 1566, 2087, 2390
MmeI	TCCRAC	1 cut(s)	1549
MroI	TCCGGA	1 cut(s)	1151
MroXI	GAANNNNTTC	2 cut(s)	998, 1290
MseI	TTAA	4 cut(s)	255, 705, 971, 1863
MslI	CAYNNNNRTG	2 cut(s)	1385, 2064
MspA1I	CMGCKG	2 cut(s)	561, 1856
MspR9I	CCNGG	5 cut(s)	934, 1207, 1371, 2401, 2538
Mva1269I	GAATGC	2 cut(s)	1474, 2002
MvaI	CCWGG	3 cut(s)	1371, 2401, 2538
MvnI	CGCG	4 cut(s)	615, 617, 1280, 1282
MwoI	GCNNNNNNNGC	7 cut(s)	302, 345, 1279, 1594, 1603, 2006, 2114
NciI	CCSGG	2 cut(s)	934, 1207
NdeII	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
NheI	GCTAGC	1 cut(s)	1042
NlaIV	GGNNCC	7 cut(s)	16, 133, 162, 1246, 1439, 2179, 2414
NmuCI	GTSAC	2 cut(s)	89, 203
NspI	RCATGY	4 cut(s)	1918, 1957, 2164, 2438
PaeR7I	CTCGAG	1 cut(s)	1545
PaqCI	CACCTGC	1 cut(s)	2414
PceI	AGGCCT	1 cut(s)	405
PciI	ACATGT	1 cut(s)	1914
PcsI	WCGNNNNNNNCGW	1 cut(s)	533
PctI	GAATGC	2 cut(s)	1474, 2002
PdmI	GAANNNNTTC	2 cut(s)	998, 1290
PfeI	GAWTC	6 cut(s)	580, 982, 1095, 1210, 1291, 2467
PflFI	GACNNNGTC	1 cut(s)	554
PflMI	CCANNNNNTGG	2 cut(s)	1370, 1805
PfoI	TCCNGGA	1 cut(s)	1205
PkrI	GCNGC	5 cut(s)	1180, 1523, 1608, 1902, 2011
PleI	GAGTC	7 cut(s)	541, 687, 885, 1035, 1566, 2087, 2390
PpsI	GAGTC	7 cut(s)	541, 687, 885, 1035, 1566, 2087, 2390
Ppu21I	YACGTR	1 cut(s)	2564
PscI	ACATGT	1 cut(s)	1914
Psp124BI	GAGCTC	3 cut(s)	747, 1131, 1585
Psp6I	CCWGG	3 cut(s)	1369, 2399, 2536
PspEI	GGTNACC	2 cut(s)	89, 920
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	3 cut(s)	1369, 2399, 2536
PspN4I	GGNNCC	7 cut(s)	16, 133, 162, 1246, 1439, 2179, 2414
PspPI	GGNCC	5 cut(s)	131, 791, 1007, 1361, 2147
PsrI	GAACNNNNNNTAC	2 cut(s)	770, 802
PsuI	RGATCY	4 cut(s)	160, 694, 1408, 1437
PsyI	GACNNNGTC	1 cut(s)	554
PvuII	CAGCTG	2 cut(s)	561, 1856
RseI	CAYNNNNRTG	2 cut(s)	1385, 2064
SacI	GAGCTC	3 cut(s)	747, 1131, 1585
SaqAI	TTAA	4 cut(s)	255, 705, 971, 1863
SatI	GCNGC	5 cut(s)	1179, 1522, 1607, 1901, 2010
Sau3AI	GATC	7 cut(s)	160, 694, 814, 1408, 1437, 1708, 1840
Sau96I	GGNCC	5 cut(s)	131, 791, 1007, 1361, 2147
ScaI	AGTACT	1 cut(s)	2138
SchI	GAGTC	7 cut(s)	542, 688, 886, 1036, 1566, 2087, 2390
ScrFI	CCNGG	5 cut(s)	934, 1207, 1371, 2401, 2538
SduI	GDGCHC	4 cut(s)	423, 747, 1131, 1585
SfaNI	GCATC	6 cut(s)	99, 340, 1155, 1785, 2198, 2381
SfcI	CTRYAG	1 cut(s)	626
Sfr274I	CTCGAG	1 cut(s)	1545
SinI	GGWCC	3 cut(s)	1007, 1361, 2147
SlaI	CTCGAG	1 cut(s)	1545
SmiMI	CAYNNNNRTG	2 cut(s)	1385, 2064
SmlI	CTYRAG	3 cut(s)	113, 746, 1545
SmoI	CTYRAG	3 cut(s)	113, 746, 1545
SnaBI	TACGTA	1 cut(s)	2564
SpeI	ACTAGT	2 cut(s)	2269, 2299
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	5 cut(s)	273, 339, 1282, 1607, 1900
SspMI	CTAG	9 cut(s)	149, 401, 593, 1043, 1274, 1773, 2270, 2300, 2321
SstI	GAGCTC	3 cut(s)	747, 1131, 1585
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	5 cut(s)	932, 1205, 1369, 2399, 2536
StyI	CCWWGG	4 cut(s)	944, 2013, 2143, 2182
TaaI	ACNGT	6 cut(s)	105, 413, 638, 1567, 1690, 2042
TaiI	ACGT	6 cut(s)	237, 480, 689, 980, 1728, 2566
TaqI	TCGA	7 cut(s)	909, 1546, 1707, 2235, 2304, 2430, 2489
TatI	WGTACW	4 cut(s)	1699, 1950, 2136, 2380
TauI	GCSGC	2 cut(s)	1609, 1903
TfiI	GAWTC	6 cut(s)	580, 982, 1095, 1210, 1291, 2467
Tru1I	TTAA	4 cut(s)	255, 705, 971, 1863
Tru9I	TTAA	4 cut(s)	255, 705, 971, 1863
TscAI	CASTG	7 cut(s)	108, 430, 649, 1582, 2295, 2374, 2413
TseFI	GTSAC	2 cut(s)	89, 203
TseI	GCWGC	3 cut(s)	1178, 1521, 2009
Tsp45I	GTSAC	2 cut(s)	89, 203
TspDTI	ATGAA	8 cut(s)	189, 374, 479, 796, 928, 1076, 1369, 1417
TspGWI	ACGGA	3 cut(s)	73, 906, 2220
TspRI	CASTG	7 cut(s)	108, 430, 649, 1582, 2295, 2374, 2413
Tth111I	GACNNNGTC	1 cut(s)	554
Van91I	CCANNNNNTGG	2 cut(s)	1370, 1805
VpaK11BI	GGWCC	3 cut(s)	1007, 1361, 2147
XapI	RAATTY	5 cut(s)	360, 507, 949, 1376, 1933
XceI	RCATGY	4 cut(s)	1918, 1957, 2164, 2438
XhoI	CTCGAG	1 cut(s)	1545
XmiI	GTMKAC	1 cut(s)	2505
XmnI	GAANNNNTTC	2 cut(s)	998, 1290
XspI	CTAG	9 cut(s)	149, 401, 593, 1043, 1274, 1773, 2270, 2300, 2321
ZraI	GACGTC	1 cut(s)	687
ZrmI	AGTACT	1 cut(s)	2138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.