RchiOBHm_Chr2g0118991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000461
Physical Location & Seq
Forward (+)
31274519 .. 31275055
537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49174

Sequence Viewer

Length: 537 bp
ATGCAAATGTCAGGTGCCTTACTCAAAACCCTCATGCTTTCTAATAATCAAATTTCTGGAAGAATCCCATTCGCCATTGGAAATCTTCACCATTTACGATATCTTGAGCTGGAAATGAATAGATTCACTAGGCAAGTACCGGATGAAATCTTCAATTTACAGAGGCTAGTGGAACTCAACATCAGCACCAACAATTTTGGTCGTGAAATTCCAGCTTCTATCTCTGGTTGTTCCACTCTAAAGTCCCTAGATTTTAGTCAAAACAATTTTGTTGGGGAAATCCCAAGAGGGATAGGCAAACCGGAAGTAATTGAGTTGCTTAATTTTTCTAGGAACAAGCTAACAGGTCTAATACCTGTGGAATTCACATACATGGCAAGCCTTAAAACTTCGAATCTCTCATATAACAATTTCATTGGTAGGATCCCAACCAGCGGTCAGTTTTCATCGATGATCGCTTCATTCGATGGAAATCCACATTTGGGTTCGCCGAGAAATGTTTCACTCACCTCCTATAACCACCCACGACTTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.9

Weight (kDa)

9.51

Isoelectric Point (pI)

26.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 8 - 41 9.8e-06 Leucine Rich repeats (2 copies)
LRR_14 PF23598 25 - 109 9.7e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 1 cut(s) 435
AclWI GGATC 2 cut(s) 418, 431
AcsI RAATTY 3 cut(s) 51, 207, 362
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 434, 482
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 3 cut(s) 109, 215, 340
AluI AGCT 3 cut(s) 109, 215, 340
AlwI GGATC 2 cut(s) 418, 431
ApoI RAATTY 3 cut(s) 51, 207, 362
Asp700I GAANNNNTTC 2 cut(s) 122, 499
AsuHPI GGTGA 2 cut(s) 80, 499
AsuII TTCGAA 1 cut(s) 392
BamHI GGATCC 1 cut(s) 423
BanI GGYRCC 1 cut(s) 14
BccI CCATC 1 cut(s) 461
BfaI CTAG 4 cut(s) 129, 167, 248, 330
BmiI GGNNCC 2 cut(s) 16, 425
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 471
BsaWI WCCGGW 2 cut(s) 139, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 482
Bse8I GATNNNNATC 1 cut(s) 471
BseCI ATCGAT 1 cut(s) 449
BseGI GGATG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 2 cut(s) 434, 482
BshNI GGYRCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 449
BsiSI CCGG 2 cut(s) 140, 302
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 2 cut(s) 434, 482
BsmFI GGGAC 1 cut(s) 229
Bsp119I TTCGAA 1 cut(s) 392
Bsp143I GATC 2 cut(s) 423, 453
BspACI CCGC 1 cut(s) 435
BspDI ATCGAT 1 cut(s) 449
BspLI GGNNCC 2 cut(s) 16, 425
BspPI GGATC 2 cut(s) 418, 431
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 14
BssMI GATC 2 cut(s) 423, 453
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 379
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 2 cut(s) 426, 456
BstMBI GATC 2 cut(s) 423, 453
BstX2I RGATCY 1 cut(s) 423
BstYI RGATCY 1 cut(s) 423
Bsu15I ATCGAT 1 cut(s) 449
BsuTUI ATCGAT 1 cut(s) 449
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 449
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 34, 373
CviJI RGCY 5 cut(s) 109, 166, 215, 340, 381
CviKI_1 RGCY 5 cut(s) 109, 166, 215, 340, 381
CviQI GTAC 1 cut(s) 137
DpnI GATC 2 cut(s) 425, 455
DpnII GATC 2 cut(s) 423, 453
Eco32I GATATC 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 362
EcoRV GATATC 1 cut(s) 101
FaeI CATG 2 cut(s) 37, 376
FaiI YATR 7 cut(s) 35, 370, 374, 403, 405, 516, 535
FaqI GGGAC 1 cut(s) 229
FatI CATG 2 cut(s) 33, 372
FokI GGATG 1 cut(s) 155
FspBI CTAG 4 cut(s) 129, 167, 248, 330
HapII CCGG 2 cut(s) 140, 302
Hin1II CATG 2 cut(s) 37, 376
HinfI GANTC 3 cut(s) 63, 123, 394
HpaII CCGG 2 cut(s) 140, 302
HphI GGTGA 2 cut(s) 80, 499
Hpy188III TCNNGA 3 cut(s) 57, 104, 203
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 2 cut(s) 37, 376
Kzo9I GATC 2 cut(s) 423, 453
LpnPI CCDG 9 cut(s) 42, 95, 153, 210, 225, 315, 330, 369, 445
MaeI CTAG 4 cut(s) 129, 167, 248, 330
MalI GATC 2 cut(s) 425, 455
MboI GATC 2 cut(s) 423, 453
MboII GAAGA 3 cut(s) 72, 77, 142
MflI RGATCY 1 cut(s) 423
MluCI AATT 9 cut(s) 51, 154, 193, 207, 265, 309, 322, 362, 409
MnlI CCTC 4 cut(s) 41, 156, 281, 520
MroXI GAANNNNTTC 2 cut(s) 122, 499
MseI TTAA 2 cut(s) 321, 384
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 2 cut(s) 140, 302
NdeII GATC 2 cut(s) 423, 453
NlaIII CATG 2 cut(s) 37, 376
NlaIV GGNNCC 2 cut(s) 16, 425
NmeAIII GCCGAG 1 cut(s) 516
NspV TTCGAA 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdmI GAANNNNTTC 2 cut(s) 122, 499
PfeI GAWTC 3 cut(s) 63, 123, 394
PspN4I GGNNCC 2 cut(s) 16, 425
PsuI RGATCY 1 cut(s) 423
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 2 cut(s) 321, 384
Sau3AI GATC 2 cut(s) 423, 453
SetI ASST 7 cut(s) 16, 111, 217, 342, 349, 358, 512
SfuI TTCGAA 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 9 cut(s) 51, 154, 193, 207, 265, 309, 322, 362, 409
SsiI CCGC 1 cut(s) 435
SspMI CTAG 4 cut(s) 129, 167, 248, 330
TaqI TCGA 3 cut(s) 392, 449, 465
TasI AATT 9 cut(s) 51, 154, 193, 207, 265, 309, 322, 362, 409
TfiI GAWTC 3 cut(s) 63, 123, 394
Tru1I TTAA 2 cut(s) 321, 384
Tru9I TTAA 2 cut(s) 321, 384
TspDTI ATGAA 5 cut(s) 131, 159, 403, 435, 450
XapI RAATTY 3 cut(s) 51, 207, 362
XmnI GAANNNNTTC 2 cut(s) 122, 499
XspI CTAG 4 cut(s) 129, 167, 248, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.