Rh2CG623600

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000461
Physical Location & Seq
Reverse (-)
79703502 .. 79704602
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG623600.1

Sequence Viewer

Length: 390 bp
ATGTGGGATTATGTAAATGTACTTCAGCTTCAGATAGAGAAGAAACTAGAAGACCAGAACATTACAAAAGAGCCATCCAGCATTACAGGCACAAAAGATATCATCTTACTCACAAGATCAGAGGTTCAGACCTTGTTTTTTCTCTCGTCATTCTGCCTTAGCTCCCTCTTGTTTGTGATTGTGATTTGGTCTTCCACCTTTTTTCTTGCTTGGAAACAGGCTGCACATGAGAAAATAGGAGTCTTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTGGAAACCATGGGCAAGCAGGTAGTGGGGAAGCGCCATGGGAAGGGGTGAGGGAGATGGACTATGTTTCAAGCACGAATGGTTGGTGCAGAGGGAGCATATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

129

Amino Acids

14.51

Weight (kDa)

5.23

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 72 - 112 1.8e-06 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 8, 14
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 284, 326
AgsI TTSAA 1 cut(s) 354
AluBI AGCT 2 cut(s) 28, 162
AluI AGCT 2 cut(s) 28, 162
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 343
BarI GAAGNNNNNNTAC 3 cut(s) 12, 38, 44
BbsI GAAGAC 2 cut(s) 57, 183
BbvI GCAGC 1 cut(s) 208
BccI CCATC 3 cut(s) 82, 273, 334
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 57, 183
Bpu10I CCTNAGC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 292, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 326
BseDI CCNNGG 2 cut(s) 292, 320
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 284, 326
BseXI GCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 284, 326
Bsp143I GATC 1 cut(s) 116
Bsp19I CCATGG 2 cut(s) 292, 320
BspMI ACCTGC 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 292, 320
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 292, 320
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 158, 244
BstDSI CCRYGG 2 cut(s) 292, 320
BstF5I GGATG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 2 cut(s) 87, 378
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 2 cut(s) 57, 183
BtgI CCRYGG 2 cut(s) 292, 320
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 260
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 20
CviAII CATG 3 cut(s) 227, 293, 321
CviJI RGCY 4 cut(s) 28, 73, 162, 221
CviKI_1 RGCY 4 cut(s) 28, 73, 162, 221
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 158, 244
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 292, 320
Eco32I GATATC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 8, 14
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 292, 320
ErhI CCWWGG 2 cut(s) 292, 320
FaeI CATG 3 cut(s) 230, 296, 324
FaiI YATR 6 cut(s) 12, 228, 294, 322, 348, 383
FatI CATG 3 cut(s) 226, 292, 320
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 222
HaeII RGCGCY 1 cut(s) 320
HhaI GCGC 1 cut(s) 319
Hin1II CATG 3 cut(s) 230, 296, 324
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 240
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 33, 121, 129
HpyAV CCTTC 2 cut(s) 288, 320
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 3 cut(s) 224, 251, 372
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 378
HpyF3I CTNAG 2 cut(s) 158, 244
Hsp92II CATG 3 cut(s) 230, 296, 324
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 167, 378
LpnPI CCDG 5 cut(s) 68, 72, 91, 203, 288
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 47
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 3 cut(s) 52, 62, 183
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 4 cut(s) 115, 176, 327, 368
MslI CAYNNNNRTG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 87, 378
NcoI CCATGG 2 cut(s) 292, 320
NdeII GATC 1 cut(s) 116
NlaIII CATG 3 cut(s) 230, 296, 324
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 1 cut(s) 249
SetI ASST 7 cut(s) 30, 126, 134, 164, 200, 274, 307
SfaNI GCATC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 270
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 292, 320
TaaI ACNGT 1 cut(s) 255
TatI WGTACW 1 cut(s) 19
TscAI CASTG 1 cut(s) 260
TseI GCWGC 1 cut(s) 221
TspRI CASTG 1 cut(s) 260
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.