Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8157004.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

216 .. 461

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8157004.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggtaagttgggtaaggaaaaccacatcaaaaatccctcggtcatccactgcatcatctgtacttgcagttgtggactccaggctcagtaggttcccattggcaggtgtcgagcatgtgtttaagatagcaatgatgttcgttgagaatcacagctctgcaagacctacgatgagggaagttgtctacttgcacactaatcctcctccagctccaggcatgatgttgagaccaaaattctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

81

Amino Acids

9.06

Weight (kDa)

11.33

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	63
AfiI	CCNNNNNNNGG	2 cut(s)	104, 215
AjnI	CCWGG	2 cut(s)	80, 214
AluBI	AGCT	2 cut(s)	156, 212
AluI	AGCT	2 cut(s)	156, 212
Alw26I	GTCTC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	82, 216
BcoDI	GTCTC	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	82, 216
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	82, 216
BmsI	GCATC	1 cut(s)	62
BpmI	CTGGAG	3 cut(s)	64, 192, 198
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 215
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	82, 216
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	104, 215
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	104, 215
BsmAI	GTCTC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	82, 216
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	223
BstNI	CCWGG	2 cut(s)	82, 216
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	80, 214
BtsCI	GGATG	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	62
CviAII	CATG	2 cut(s)	116, 220
CviJI	RGCY	3 cut(s)	85, 156, 212
CviKI_1	RGCY	3 cut(s)	85, 156, 212
CviQI	GTAC	1 cut(s)	62
DdeI	CTNAG	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	80, 214
FaeI	CATG	2 cut(s)	119, 223
FaiI	YATR	3 cut(s)	117, 221, 244
FatI	CATG	2 cut(s)	115, 219
FblI	GTMKAC	1 cut(s)	186
FokI	GGATG	1 cut(s)	31
GsuI	CTGGAG	3 cut(s)	64, 192, 198
Hin1II	CATG	2 cut(s)	119, 223
HinfI	GANTC	2 cut(s)	77, 148
Hpy166II	GTNNAC	2 cut(s)	76, 187
Hpy8I	GTNNAC	2 cut(s)	76, 187
HpyCH4V	TGCA	4 cut(s)	53, 68, 161, 193
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	119, 223
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	67, 90, 94, 201, 222, 228
LweI	GCATC	1 cut(s)	62
MluCI	AATT	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	48, 168, 213, 216
MseI	TTAA	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	82, 216
MvaI	CCWGG	2 cut(s)	82, 216
NlaIII	CATG	2 cut(s)	119, 223
NlaIV	GGNNCC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	80, 214
PspGI	CCWGG	2 cut(s)	80, 214
PspN4I	GGNNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	123
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	82, 216
SetI	ASST	5 cut(s)	95, 109, 158, 169, 214
SfaNI	GCATC	1 cut(s)	62
Sse9I	AATT	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	80, 214
TaqI	TCGA	1 cut(s)	111
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	1 cut(s)	236
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	55
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.