Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

21231516 .. 21231926

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGACTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTAGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.99

Weight (kDa)

9.71

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	8e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 393
Acc36I	ACCTGC	3 cut(s)	78, 160, 393
AciI	CCGC	2 cut(s)	82, 401
AclWI	GGATC	2 cut(s)	188, 362
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	220
AluBI	AGCT	2 cut(s)	130, 193
AluI	AGCT	2 cut(s)	130, 193
AlwI	GGATC	2 cut(s)	188, 362
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 393
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	6, 155
BmrFI	CCNGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 291
BseJI	GATNNNNATC	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	365
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	256, 299
Bsp143I	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
BspACI	CCGC	2 cut(s)	82, 401
BspLI	GGNNCC	2 cut(s)	6, 155
BspMI	ACCTGC	3 cut(s)	78, 160, 393
BspPI	GGATC	2 cut(s)	188, 362
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
BstF5I	GGATG	2 cut(s)	37, 291
BstKTI	GATC	6 cut(s)	109, 183, 213, 310, 357, 376
BstMBI	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 400
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	180, 373
BstYI	RGATCY	2 cut(s)	180, 373
BtsCI	GGATG	2 cut(s)	37, 291
BveI	ACCTGC	3 cut(s)	78, 160, 393
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	70, 292, 300, 349
CviJI	RGCY	4 cut(s)	53, 130, 193, 254
CviKI_1	RGCY	4 cut(s)	53, 130, 193, 254
CviQI	GTAC	1 cut(s)	202
DpnI	GATC	6 cut(s)	108, 182, 212, 309, 356, 375
DpnII	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	4 cut(s)	73, 295, 303, 352
FaiI	YATR	6 cut(s)	71, 164, 293, 301, 350, 362
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	69, 291, 299, 348
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 298
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	4 cut(s)	73, 295, 303, 352
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	3 cut(s)	93, 244, 278
Hpy188I	TCNGA	2 cut(s)	111, 285
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 311
Hpy8I	GTNNAC	3 cut(s)	93, 244, 278
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	303, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 400
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	73, 295, 303, 352
Kzo9I	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
LmnI	GCTCC	2 cut(s)	84, 127
LpnPI	CCDG	8 cut(s)	29, 67, 73, 155, 203, 296, 389, 398
Lsp1109I	GCAGC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	6 cut(s)	108, 182, 212, 309, 356, 375
MboI	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
MboII	GAAGA	3 cut(s)	282, 368, 389
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	2 cut(s)	180, 373
MhlI	GDGCHC	2 cut(s)	256, 299
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	22, 29, 131, 171, 345
MseI	TTAA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	193, 403
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	79, 400
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
NlaIII	CATG	4 cut(s)	73, 295, 303, 352
NlaIV	GGNNCC	2 cut(s)	6, 155
NspI	RCATGY	1 cut(s)	73
PaqCI	CACCTGC	2 cut(s)	78, 393
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	6, 155
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 373
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	106, 180, 210, 307, 354, 373
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	256, 299
SetI	ASST	7 cut(s)	92, 132, 155, 174, 195, 228, 387
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	82, 401
StyD4I	CCNGG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.