Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

61855999 .. 61859935

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2925 bp

ATGGTAATGTCTCCCATTATTCTTCACATTATTCTCATCTTCCTCCTCTGCTCCACTTGTTGCGGAAGCGGAAATGGTGATCTTGAAGCACTGCTGAAGCTCAAGGCCTCCATGATTGGTCCCAAAGGTTCCGGCCTTCACGATTGGAAAACGACGTCGTTGATATCTCCCTCGGCGCACTGTCTATTTACTGGCGTTACATGCGACGGCGAATTCCGAGTAGTGGCTCTCAACGTGTCGGGTCTGCCTCTGTTCGGAAAGGTTGCGCCGGAGATTGGGCTTCTCACTAAGGTCGTGAACCTCACAATCGCCGACAACAACTTCACTGGGAAGCTTCCGGCGGAGATTGGCAATCTGACGGCTCTGAGGCACTTGAACATTTCTAACAACTTGTTCGTCGGAAAGTTCCCCGGAGAAATCACGAGGCGGATGACGGAGCTGGAGGTCATCGACGCCTATAACAACAACTTCAATGGCCCACTTCCCGTCGAGCTCATCAGTCTCAAAAATCTCAAATATCTTCATCTGGGCGGGAACTACTTCACCGGCCCGATTCCCGACAATTACTCCGAGATTCAGAGCTTGGAGTATTTGGGCCTCAACGGAATTGGCCTCAGTGGAAAGTTTCCGGCCAGTCTGTCACGTTTGAAGAATCTCAAGGAAATGTACGTCGGCTATTACAATACTTACGACGGCGGAATTCCTCCGGAGTTGGGATCGTTGAGTTCGTTACGGATTCTGGACATGGCTAGCTGTAATCTCACCGGCACCATTCCCATAAGCCTAAGTAATTTGAAGCATTTGATCTCTCTATTTCTTCAAATTAACCAACTCACTGGTTTCATACCTCCCCAACTCTCTACCCTGCCCAGCCTCATGTCTCTGGATCTTTCCATAAACTCGCTCACCGGAGAGATACCGGCGTCGTTCTCGGAACTGAAGAACATTACGCTCATCAATCTGTACAAGAACAATCTCTATGGCCCCATTCCCAAATTTGTTGGTGACTTTCCTCATCTGGAGGTGCTTCAGGTGTGGGAGAACAACTTTACTTACGAGCTGCCGGAGAATCTCGGCCGCAGTGGGAGGCTTAAAGATCTCGACGTCACCGGAAACCACTTCACCGGGCTGATTCCTCGGGATTTGTGCAAGGGAGGGATGTTGAGGACGCTGATACTGATGGATAATCACTTCTTTGGCCCCATTCCTGAAGAGTTAGGCCAGTGCAAGTCGCTCATCAAGATCAGAATGGTGAAGAACACACTCACGGGGACTATTCCGGCAGGGATGTTTAGTTTACCTAATGTGAATATCATTGAGCTCAATGATAATTACTTGTCTGGCCAACTTCCGGCGCAAATGTCAGCAGGCTCACTCGGAATCCTAGGACTTTCTGGGAATCAAATTTCCGGCGAAATCCCACCGGCTATTGGAAATCTGAAGAATCTGCAGACGCTTTCTCTGGAAATGAACAAATTCTCCGGTGAAATTCCAATGGAAATCTTCAATCTGAAATTATTGGCCAAGATCAACATCAGCGCCAACAACTTGAGCAATAGAATTCCGGACACAATTTCTCAATGCTCCTCCCTAAGTTTTGCTGATCTTAGTAGAAACAACTTGGTTGGGGAAATTCCAAAGGGGATTGCAAAGTTGAAGGTTCTGAGCATTCTCAATTTCTCTCGAAACCATCTAACGGGTCCAGTTCCTCCTCAAATTCGCAACATGGCTGCTCTCACAACTCTTGATCTCTCCGATAACAATCTCAGCGGCAAACTCCCAACCGGCGGTCAATTTCTGGTGTTCAGTAACTCATCCTTTGCCGGAAACCCCTTGCTCTGTTTACCACGCAGTGTTTCCTGCCCGACTGTTCGAGCCCACAAAGCATTTGGTACCTCCAGGGTGGCTCTTATCATAATCGGACTCTCTACCTTTCTGCTATTCCTACTGATCACAGTGTACAAAATGAGAAGGACGAAATTTCAGAAATCCATGACTTGGAAGCTGACGGCCTTTCAACGGCTCGATTTCAGAGCAGAGGAGGTGCTGGAGTGTTTGAAGGATGAAAACATCATAGGCAAAGGGGGAGCCGGAGTCGTCTACCGCGGCTCCATGCCTGACGGCCTTGACGTGGCAATCAAACGGCTGGTCGGGCGTGGAACCGGACGGAACGATCACGGATTTTCTGCCGAGATAAAAACGTTAGGACGAATCCGGCACCGAAATATTGTTAGGCTGTTGGGGTTCGTGTCTAACAAGGACACGAATTTGTTGCTATACGAGTACATGCCTAACGGAAGCTTGGGGGAGGTGCTGCATGGGTCAAAGGGAGGACATTTGCAGTGGGACAGGAGGTACAGGATCGCCGTGGAAGCTGCCAAGGGGTTGTGCTATCTCCACCACGACTGTTCGCCTCTGATTATTCACAGGGATGTCAAGTCCAATAACATCTTGCTCGACTCCGACTTTGAGGCCCATGTTGCTGATTTTGGGCTCGCTAAGTTCCTTCAAGACGCCGGAGTTTCTGAGTGCATGTCTTCTATTGCTGGCTCCTATGGTTACATTGCCCCAGAGTATGCATACACATTAAAAGTGGACGAGAAAAGCGACGTGTACAGCTTTGGTGTGGTTCTGCTAGAGCTAGTTGTCGGGAGGAAACCAGTTGGGGAATTCGGCGATGGAGTGGACATTGTAAGGTGGGTGAGGAAGACTACATCGGAGCTCTCTCAGCCGTCGGATGCAGCAGCAGTGCTGGCGGTGGTGGATCACAGGCTCAGTGAATACCCCCTCGCAGGGGTCATACACCTGTTCAAGATTGCAATGATGTGCGTCGAGGATGACAGCTCGGCAAGACCAACAATGAGGGAAGTGGTCCACATGCTCACTAATCCTCCGCGCTCTGCTCCAAACCTACTCAACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

974

Amino Acids

106.45

Weight (kDa)

8.41

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	25 - 69	3.4e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	114 - 224	3.9e-09	Leucine-rich repeat region
LRR_14	PF23598	236 - 373	1.2e-08	Leucine-rich repeat region
LRR_14	PF23598	461 - 532	3.1e-06	Leucine-rich repeat region
Pkinase	PF00069	688 - 959	5e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	689 - 961	1.1e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	158, 1107
Acc65I	GGTACC	1 cut(s)	1892
AccB1I	GGYRCC	3 cut(s)	767, 1892, 2217
AccB7I	CCANNNNNTGG	1 cut(s)	1998
AccI	GTMKAC	1 cut(s)	2100
AccII	CGCG	2 cut(s)	2106, 2896
AccIII	TCCGGA	2 cut(s)	706, 1564
AclI	AACGTT	1 cut(s)	2201
AclWI	GGATC	4 cut(s)	724, 894, 2369, 2772
AcoI	YGGCCR	4 cut(s)	630, 1075, 1342, 1521
AcuI	CTGAAG	5 cut(s)	116, 959, 1013, 1230, 1460
AcyI	GRCGYC	5 cut(s)	155, 453, 923, 1104, 2514
AdeI	CACNNNGTG	1 cut(s)	1853
AfaI	GTAC	7 cut(s)	668, 965, 1894, 1961, 2285, 2357, 2615
AflIII	ACRYGT	2 cut(s)	234, 2610
AjiI	CACGTC	2 cut(s)	2131, 2611
AjnI	CCWGG	1 cut(s)	1898
AloI	GAACNNNNNNTCC	2 cut(s)	1463, 1495
Alw21I	GWGCWC	3 cut(s)	495, 1323, 2724
Alw26I	GTCTC	3 cut(s)	15, 506, 885
AlwI	GGATC	4 cut(s)	724, 894, 2369, 2772
Ama87I	CYCGRG	1 cut(s)	1137
Aor13HI	TCCGGA	2 cut(s)	706, 1564
ApeKI	GCWGC	6 cut(s)	1060, 1730, 2314, 2375, 2741, 2744
ArsI	GACNNNNNNTTYG	4 cut(s)	2133, 2165, 2450, 2482
Asp700I	GAANNNNTTC	2 cut(s)	539, 1475
Asp718I	GGTACC	1 cut(s)	1892
AspA2I	CCTAGG	1 cut(s)	1384
AspLEI	GCGC	5 cut(s)	178, 268, 1357, 1541, 2898
AspS9I	GGNCC	9 cut(s)	119, 476, 548, 595, 983, 1199, 1700, 2473, 2872
AsuC2I	CCSGG	2 cut(s)	411, 1126
AsuNHI	GCTAGC	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	1137
AvaII	GGWCC	3 cut(s)	119, 1700, 2872
AvrII	CCTAGG	1 cut(s)	1384
BaeI	ACNNNNGTAYC	2 cut(s)	908, 941
BalI	TGGCCA	2 cut(s)	1344, 1523
BanI	GGYRCC	3 cut(s)	767, 1892, 2217
BanII	GRGCYC	5 cut(s)	495, 1323, 1879, 2496, 2724
BauI	CACGAG	1 cut(s)	421
BbsI	GAAGAC	2 cut(s)	2529, 2714
Bbv12I	GWGCWC	3 cut(s)	495, 1323, 2724
BbvI	GCAGC	6 cut(s)	1047, 1717, 2301, 2362, 2753, 2756
BccI	CCATC	3 cut(s)	1174, 1698, 2672
BceAI	ACGGC	9 cut(s)	223, 375, 709, 2025, 2036, 2137, 2159, 2351, 2716
BcgI	CGANNNNNNTGC	2 cut(s)	2254, 2288
BciT130I	CCWGG	1 cut(s)	1900
BclI	TGATCA	1 cut(s)	1950
BcnI	CCSGG	2 cut(s)	411, 1126
BcoDI	GTCTC	3 cut(s)	15, 506, 885
BfaI	CTAG	4 cut(s)	750, 1385, 2636, 2642
BfmI	CTRYAG	1 cut(s)	1448
BfoI	RGCGCY	1 cut(s)	1542
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	9 cut(s)	1061, 1078, 1731, 1771, 2107, 2315, 2376, 2742, 2745
BlnI	CCTAGG	1 cut(s)	1384
BlsI	GCNGC	9 cut(s)	1062, 1079, 1732, 1772, 2108, 2316, 2377, 2743, 2746
Bme1390I	CCNGG	3 cut(s)	411, 1126, 1900
Bme18I	GGWCC	3 cut(s)	119, 1700, 2872
BmeT110I	CYCGRG	1 cut(s)	1137
BmgBI	CACGTC	2 cut(s)	2131, 2611
BmgT120I	GGNCC	9 cut(s)	119, 476, 548, 595, 983, 1199, 1700, 2473, 2872
BmrFI	CCNGG	3 cut(s)	411, 1126, 1900
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	2728
BmtI	GCTAGC	1 cut(s)	753
BmuI	ACTGGG	1 cut(s)	336
BpiI	GAAGAC	2 cut(s)	2529, 2714
BpmI	CTGGAG	4 cut(s)	461, 1040, 1882, 2069
BpuEI	CTTGAG	3 cut(s)	86, 641, 1570
BpuMI	CCSGG	2 cut(s)	411, 1126
BsaBI	GATNNNNATC	2 cut(s)	1532, 1761
BsaHI	GRCGYC	5 cut(s)	155, 453, 923, 1104, 2514
BsaJI	CCNNGG	8 cut(s)	171, 409, 1136, 1384, 1899, 2104, 2367, 2379
BsaWI	WCCGGW	6 cut(s)	706, 908, 1109, 1481, 1564, 2162
Bse118I	RCCGGY	5 cut(s)	545, 764, 919, 1423, 1784
Bse1I	ACTGG	7 cut(s)	196, 331, 633, 841, 1222, 1703, 2660
Bse3DI	GCAATG	2 cut(s)	2562, 2826
Bse8I	GATNNNNATC	2 cut(s)	1532, 1761
BseAI	TCCGGA	2 cut(s)	706, 1564
BseBI	CCWGG	1 cut(s)	1900
BseDI	CCNNGG	8 cut(s)	171, 409, 1136, 1384, 1899, 2104, 2367, 2379
BseGI	GGATG	8 cut(s)	435, 1164, 1293, 1814, 2068, 2437, 2743, 2842
BseJI	GATNNNNATC	2 cut(s)	1532, 1761
BseMI	GCAATG	2 cut(s)	2562, 2826
BseMII	CTCAG	7 cut(s)	356, 628, 1655, 1780, 2517, 2741, 2788
BseNI	ACTGG	7 cut(s)	196, 331, 633, 841, 1222, 1703, 2660
BseRI	GAGGAG	4 cut(s)	35, 1576, 1701, 2054
BseX3I	CGGCCG	1 cut(s)	1075
BseXI	GCAGC	6 cut(s)	1047, 1717, 2301, 2362, 2753, 2756
BseYI	CCCAGC	1 cut(s)	869
Bsh1236I	CGCG	2 cut(s)	2106, 2896
Bsh1285I	CGRYCG	1 cut(s)	1078
BshNI	GGYRCC	3 cut(s)	767, 1892, 2217
BsiEI	CGRYCG	1 cut(s)	1078
BsiHKAI	GWGCWC	3 cut(s)	495, 1323, 2724
BsiHKCI	CYCGRG	1 cut(s)	1137
BslFI	GGGAC	3 cut(s)	105, 1285, 2360
BsmAI	GTCTC	3 cut(s)	15, 506, 885
BsmFI	GGGAC	3 cut(s)	105, 1285, 2360
BsmI	GAATGC	1 cut(s)	1668
BsoBI	CYCGRG	1 cut(s)	1137
Bsp1286I	GDGCHC	5 cut(s)	495, 1323, 1879, 2496, 2724
Bsp13I	TCCGGA	2 cut(s)	706, 1564
Bsp1407I	TGTACA	3 cut(s)	963, 1959, 2613
BspCNI	CTCAG	7 cut(s)	357, 627, 1656, 1779, 2518, 2740, 2787
BspEI	TCCGGA	2 cut(s)	706, 1564
BspFNI	CGCG	2 cut(s)	2106, 2896
BspMAI	CTGCAG	1 cut(s)	1452
BspOI	GCTAGC	1 cut(s)	753
BspPI	GGATC	4 cut(s)	724, 894, 2369, 2772
BspT107I	GGYRCC	3 cut(s)	767, 1892, 2217
BsrDI	GCAATG	2 cut(s)	2562, 2826
BsrFI	RCCGGY	5 cut(s)	545, 764, 919, 1423, 1784
BsrGI	TGTACA	3 cut(s)	963, 1959, 2613
BsrI	ACTGG	7 cut(s)	196, 331, 633, 841, 1222, 1703, 2660
BssAI	RCCGGY	5 cut(s)	545, 764, 919, 1423, 1784
BssECI	CCNNGG	8 cut(s)	171, 409, 1136, 1384, 1899, 2104, 2367, 2379
BssNI	GRCGYC	5 cut(s)	155, 453, 923, 1104, 2514
BssSI	CACGAG	1 cut(s)	421
BssT1I	CCWWGG	2 cut(s)	1384, 2379
Bst2BI	CACGAG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	1900
Bst4CI	ACNGT	4 cut(s)	182, 1870, 1957, 2408
Bst6I	CTCTTC	1 cut(s)	1206
BstACI	GRCGYC	5 cut(s)	155, 453, 923, 1104, 2514
BstAUI	TGTACA	3 cut(s)	963, 1959, 2613
BstC8I	GCNNGC	5 cut(s)	751, 1369, 2496, 2548, 2754
BstDSI	CCRYGG	2 cut(s)	2104, 2367
BstF5I	GGATG	8 cut(s)	435, 1164, 1293, 1814, 2068, 2437, 2743, 2842
BstFNI	CGCG	2 cut(s)	2106, 2896
BstH2I	RGCGCY	1 cut(s)	1542
BstHHI	GCGC	5 cut(s)	178, 268, 1357, 1541, 2898
BstMAI	GTCTC	3 cut(s)	15, 506, 885
BstMCI	CGRYCG	1 cut(s)	1078
BstMWI	GCNNNNNNNGC	7 cut(s)	201, 1883, 2152, 2372, 2480, 2728, 2753
BstNI	CCWGG	1 cut(s)	1900
BstNSI	RCATGY	4 cut(s)	204, 2290, 2536, 2881
BstSCI	CCNGG	3 cut(s)	409, 1124, 1898
BstSFI	CTRYAG	1 cut(s)	1448
BstUI	CGCG	2 cut(s)	2106, 2896
BstV1I	GCAGC	6 cut(s)	1047, 1717, 2301, 2362, 2753, 2756
BstV2I	GAAGAC	2 cut(s)	2529, 2714
BstX2I	RGATCY	2 cut(s)	886, 1096
BstXI	CCANNNNNNTGG	1 cut(s)	836
BstYI	RGATCY	2 cut(s)	886, 1096
BstZI	CGGCCG	1 cut(s)	1075
BtgI	CCRYGG	2 cut(s)	2104, 2367
BtgZI	GCGATG	1 cut(s)	2691
BtrI	CACGTC	2 cut(s)	2131, 2611
BtsCI	GGATG	8 cut(s)	435, 1164, 1293, 1814, 2068, 2437, 2743, 2842
BtsI	GCAGTG	5 cut(s)	89, 1087, 1858, 2348, 2754
Cac8I	GCNNGC	5 cut(s)	751, 1369, 2496, 2548, 2754
CfoI	GCGC	5 cut(s)	178, 268, 1357, 1541, 2898
Cfr10I	RCCGGY	5 cut(s)	545, 764, 919, 1423, 1784
Cfr13I	GGNCC	9 cut(s)	119, 476, 548, 595, 983, 1199, 1700, 2473, 2872
Cfr42I	CCGCGG	1 cut(s)	2107
CseI	GACGC	6 cut(s)	461, 912, 1177, 1462, 2522, 2818
Csp6I	GTAC	7 cut(s)	667, 964, 1893, 1960, 2284, 2356, 2614
CviQI	GTAC	7 cut(s)	667, 964, 1893, 1960, 2284, 2356, 2614
DraIII	CACNNNGTG	1 cut(s)	1853
EaeI	YGGCCR	4 cut(s)	630, 1075, 1342, 1521
EagI	CGGCCG	1 cut(s)	1075
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
EciI	GGCGGA	3 cut(s)	356, 442, 711
Ecl136II	GAGCTC	3 cut(s)	493, 1321, 2722
EclXI	CGGCCG	1 cut(s)	1075
Eco130I	CCWWGG	2 cut(s)	1384, 2379
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	5 cut(s)	495, 1323, 1879, 2496, 2724
Eco32I	GATATC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	119, 1700, 2872
Eco52I	CGGCCG	1 cut(s)	1075
Eco53kI	GAGCTC	3 cut(s)	493, 1321, 2722
Eco57I	CTGAAG	5 cut(s)	116, 959, 1013, 1230, 1460
Eco88I	CYCGRG	1 cut(s)	1137
EcoICRI	GAGCTC	3 cut(s)	493, 1321, 2722
EcoRI	GAATTC	4 cut(s)	212, 699, 1560, 2669
EcoRII	CCWGG	1 cut(s)	1898
EcoRV	GATATC	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	1384, 2379
EcoT22I	ATGCAT	1 cut(s)	2581
EcoT38I	GRGCYC	5 cut(s)	495, 1323, 1879, 2496, 2724
ErhI	CCWWGG	2 cut(s)	1384, 2379
FaqI	GGGAC	3 cut(s)	105, 1285, 2360
FauI	CCCGC	1 cut(s)	524
FbaI	TGATCA	1 cut(s)	1950
FblI	GTMKAC	1 cut(s)	2100
Fnu4HI	GCNGC	9 cut(s)	1061, 1078, 1731, 1771, 2107, 2315, 2376, 2742, 2745
FokI	GGATG	8 cut(s)	442, 1171, 1300, 1801, 2075, 2444, 2750, 2849
FriOI	GRGCYC	5 cut(s)	495, 1323, 1879, 2496, 2724
Fsp4HI	GCNGC	9 cut(s)	1061, 1078, 1731, 1771, 2107, 2315, 2376, 2742, 2745
FspBI	CTAG	4 cut(s)	750, 1385, 2636, 2642
GlaI	GCGC	5 cut(s)	177, 267, 1356, 1540, 2897
GluI	GCNGC	9 cut(s)	1061, 1078, 1731, 1771, 2107, 2315, 2376, 2742, 2745
GsaI	CCCAGC	1 cut(s)	873
GsuI	CTGGAG	4 cut(s)	461, 1040, 1882, 2069
HaeII	RGCGCY	1 cut(s)	1542
HgaI	GACGC	6 cut(s)	461, 912, 1177, 1462, 2522, 2818
HhaI	GCGC	5 cut(s)	178, 268, 1357, 1541, 2898
Hin1I	GRCGYC	5 cut(s)	155, 453, 923, 1104, 2514
Hin6I	GCGC	5 cut(s)	176, 266, 1355, 1539, 2896
HinP1I	GCGC	5 cut(s)	176, 266, 1355, 1539, 2896
HindIII	AAGCTT	2 cut(s)	332, 2299
Hpy166II	GTNNAC	9 cut(s)	298, 1298, 1844, 1960, 2101, 2596, 2614, 2686, 2875
Hpy8I	GTNNAC	9 cut(s)	298, 1298, 1844, 1960, 2101, 2596, 2614, 2686, 2875
HpyAV	CCTTC	5 cut(s)	146, 1651, 1965, 2053, 2516
HpyCH4III	ACNGT	4 cut(s)	182, 1870, 1957, 2408
HpyCH4IV	ACGT	8 cut(s)	155, 234, 643, 669, 1104, 2130, 2201, 2610
HpyF10VI	GCNNNNNNNGC	7 cut(s)	201, 1883, 2152, 2372, 2480, 2728, 2753
HpySE526I	ACGT	8 cut(s)	155, 234, 643, 669, 1104, 2130, 2201, 2610
Hsp92I	GRCGYC	5 cut(s)	155, 453, 923, 1104, 2514
HspAI	GCGC	5 cut(s)	176, 266, 1355, 1539, 2896
Kpn2I	TCCGGA	2 cut(s)	706, 1564
KpnI	GGTACC	1 cut(s)	1896
Ksp22I	TGATCA	1 cut(s)	1950
KspI	CCGCGG	1 cut(s)	2107
LmnI	GCTCC	8 cut(s)	56, 436, 1589, 2087, 2114, 2555, 2719, 2908
Lsp1109I	GCAGC	6 cut(s)	1047, 1717, 2301, 2362, 2753, 2756
LweI	GCATC	1 cut(s)	2728
MaeI	CTAG	4 cut(s)	750, 1385, 2636, 2642
MaeII	ACGT	8 cut(s)	155, 234, 643, 669, 1104, 2130, 2201, 2610
MaeIII	GTNAC	7 cut(s)	196, 639, 729, 1004, 1105, 1808, 2558
MflI	RGATCY	2 cut(s)	886, 1096
MhlI	GDGCHC	5 cut(s)	495, 1323, 1879, 2496, 2724
MlsI	TGGCCA	2 cut(s)	1344, 1523
MluNI	TGGCCA	2 cut(s)	1344, 1523
MlyI	GAGTC	3 cut(s)	1917, 2103, 2453
MmeI	TCCRAC	3 cut(s)	379, 2487, 2715
Mox20I	TGGCCA	2 cut(s)	1344, 1523
Mph1103I	ATGCAT	1 cut(s)	2581
MroI	TCCGGA	2 cut(s)	706, 1564
MroXI	GAANNNNTTC	2 cut(s)	539, 1475
MscI	TGGCCA	2 cut(s)	1344, 1523
MseI	TTAA	3 cut(s)	825, 1092, 2588
MslI	CAYNNNNRTG	1 cut(s)	2430
Msp20I	TGGCCA	2 cut(s)	1344, 1523
MspA1I	CMGCKG	2 cut(s)	1770, 2106
MspR9I	CCNGG	3 cut(s)	411, 1126, 1900
Mva1269I	GAATGC	1 cut(s)	1668
MvaI	CCWGG	1 cut(s)	1900
MvnI	CGCG	2 cut(s)	2106, 2896
MwoI	GCNNNNNNNGC	7 cut(s)	201, 1883, 2152, 2372, 2480, 2728, 2753
NciI	CCSGG	2 cut(s)	411, 1126
NheI	GCTAGC	1 cut(s)	749
NmeAIII	GCCGAG	4 cut(s)	152, 1053, 2215, 2825
NmuCI	GTSAC	3 cut(s)	639, 1004, 1105
NsiI	ATGCAT	1 cut(s)	2581
NspI	RCATGY	4 cut(s)	204, 2290, 2536, 2881
PceI	AGGCCT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	3 cut(s)	725, 2127, 2604
PctI	GAATGC	1 cut(s)	1668
PdmI	GAANNNNTTC	2 cut(s)	539, 1475
PflMI	CCANNNNNTGG	1 cut(s)	1998
PkrI	GCNGC	9 cut(s)	1062, 1079, 1732, 1772, 2108, 2316, 2377, 2743, 2746
PleI	GAGTC	3 cut(s)	1917, 2102, 2453
PpsI	GAGTC	3 cut(s)	1917, 2102, 2453
Psp124BI	GAGCTC	3 cut(s)	495, 1323, 2724
Psp1406I	AACGTT	1 cut(s)	2201
Psp6I	CCWGG	1 cut(s)	1898
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	1898
PspPI	GGNCC	9 cut(s)	119, 476, 548, 595, 983, 1199, 1700, 2473, 2872
PstI	CTGCAG	1 cut(s)	1452
PsuI	RGATCY	2 cut(s)	886, 1096
RsaI	GTAC	7 cut(s)	668, 965, 1894, 1961, 2285, 2357, 2615
RsaNI	GTAC	7 cut(s)	667, 964, 1893, 1960, 2284, 2356, 2614
RseI	CAYNNNNRTG	1 cut(s)	2430
SacI	GAGCTC	3 cut(s)	495, 1323, 2724
SacII	CCGCGG	1 cut(s)	2107
SaqAI	TTAA	3 cut(s)	825, 1092, 2588
SatI	GCNGC	9 cut(s)	1061, 1078, 1731, 1771, 2107, 2315, 2376, 2742, 2745
Sau96I	GGNCC	9 cut(s)	119, 476, 548, 595, 983, 1199, 1700, 2473, 2872
SchI	GAGTC	3 cut(s)	1917, 2103, 2453
ScrFI	CCNGG	3 cut(s)	411, 1126, 1900
SduI	GDGCHC	5 cut(s)	495, 1323, 1879, 2496, 2724
SfaNI	GCATC	1 cut(s)	2728
SfcI	CTRYAG	1 cut(s)	1448
Sfr303I	CCGCGG	1 cut(s)	2107
SgrBI	CCGCGG	1 cut(s)	2107
SinI	GGWCC	3 cut(s)	119, 1700, 2872
SmiMI	CAYNNNNRTG	1 cut(s)	2430
SmlI	CTYRAG	3 cut(s)	101, 656, 1549
SmoI	CTYRAG	3 cut(s)	101, 656, 1549
SseBI	AGGCCT	1 cut(s)	107
SspI	AATATT	1 cut(s)	2227
SspMI	CTAG	4 cut(s)	750, 1385, 2636, 2642
SstI	GAGCTC	3 cut(s)	495, 1323, 2724
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	409, 1124, 1898
StyI	CCWWGG	2 cut(s)	1384, 2379
TaaI	ACNGT	4 cut(s)	182, 1870, 1957, 2408
TaiI	ACGT	8 cut(s)	158, 237, 646, 672, 1107, 2133, 2204, 2613
TaqI	TCGA	8 cut(s)	450, 489, 1101, 1684, 1873, 2025, 2457, 2832
TatI	WGTACW	4 cut(s)	963, 1959, 2283, 2613
TauI	GCSGC	3 cut(s)	1080, 1773, 2109
Tru1I	TTAA	3 cut(s)	825, 1092, 2588
Tru9I	TTAA	3 cut(s)	825, 1092, 2588
TseFI	GTSAC	3 cut(s)	639, 1004, 1105
TseI	GCWGC	6 cut(s)	1060, 1730, 2314, 2375, 2741, 2744
Tsp45I	GTSAC	3 cut(s)	639, 1004, 1105
TspDTI	ATGAA	4 cut(s)	512, 832, 1484, 2079
TspGWI	ACGGA	6 cut(s)	449, 618, 748, 2182, 2193, 2310
Van91I	CCANNNNNTGG	1 cut(s)	1998
VpaK11BI	GGWCC	3 cut(s)	119, 1700, 2872
XceI	RCATGY	4 cut(s)	204, 2290, 2536, 2881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1886
XmaJI	CCTAGG	1 cut(s)	1384
XmiI	GTMKAC	1 cut(s)	2100
XmnI	GAANNNNTTC	2 cut(s)	539, 1475
XspI	CTAG	4 cut(s)	750, 1385, 2636, 2642
ZraI	GACGTC	2 cut(s)	156, 1105
Zsp2I	ATGCAT	1 cut(s)	2581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.