Rroxscaffold_7G00192210

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000461
Physical Location & Seq
Forward (+)
33335583 .. 33337212
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192210.1

Sequence Viewer

Length: 240 bp
ATGGCTCCAGTTTTCTCTCAAGCTACCTGGCGTTGCGTATGGTATATGATCCAGAATAACTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTAAGTCTTGAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

79

Amino Acids

8.99

Weight (kDa)

5.39

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 1 - 74 9.7e-30 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 169
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 43, 58
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 3 cut(s) 73, 160, 161
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 2 cut(s) 23, 91
AluI AGCT 2 cut(s) 23, 91
Alw21I GWGCWC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 2 cut(s) 43, 58
Aor13HI TCCGGA 1 cut(s) 169
AoxI GGCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 167, 208
AvaII GGWCC 2 cut(s) 167, 208
BaeGI GKGCMC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 80
BisI GCNGC 2 cut(s) 89, 151
BlsI GCNGC 2 cut(s) 90, 152
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 2 cut(s) 167, 208
BmgT120I GGNCC 2 cut(s) 167, 208
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 169
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 160, 161
Bse1I ACTGG 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 169
BseBI CCWGG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 73, 160, 161
BseMII CTCAG 2 cut(s) 120, 206
BseNI ACTGG 1 cut(s) 8
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 3 cut(s) 73, 160, 161
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 106
Bsp13I TCCGGA 1 cut(s) 169
Bsp143I GATC 2 cut(s) 48, 63
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 121, 205
BspEI TCCGGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 43, 58
BsrI ACTGG 1 cut(s) 8
BssMI GATC 2 cut(s) 48, 63
Bst2UI CCWGG 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 129, 192
BstKTI GATC 2 cut(s) 51, 66
BstMBI GATC 2 cut(s) 48, 63
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 167, 208
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 68
CviJI RGCY 5 cut(s) 5, 23, 91, 96, 150
CviKI_1 RGCY 5 cut(s) 5, 23, 91, 96, 150
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 129, 192
DpnI GATC 2 cut(s) 50, 65
DpnII GATC 2 cut(s) 48, 63
EaeI YGGCCR 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 167, 208
EcoRII CCWGG 1 cut(s) 26
FaeI CATG 1 cut(s) 71
FaiI YATR 8 cut(s) 40, 45, 47, 69, 86, 137, 147, 213
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 89, 151
Fsp4HI GCNGC 2 cut(s) 89, 151
FspBI CTAG 1 cut(s) 80
GluI GCNGC 2 cut(s) 89, 151
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 170
Hin1II CATG 1 cut(s) 71
HpaII CCGG 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 104
Hpy188III TCNNGA 3 cut(s) 52, 170, 230
Hpy8I GTNNAC 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 88, 104, 203
HpyF3I CTNAG 2 cut(s) 129, 192
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 71
Kpn2I TCCGGA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 48, 63
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 13, 21, 40, 65, 183
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 236
MalI GATC 2 cut(s) 50, 65
MboI GATC 2 cut(s) 48, 63
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 2 cut(s) 111, 185
MnlI CCTC 2 cut(s) 158, 201
MroI TCCGGA 1 cut(s) 169
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 28
MvaI CCWGG 1 cut(s) 28
NdeII GATC 2 cut(s) 48, 63
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 6
PkrI GCNGC 2 cut(s) 90, 152
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 167, 208
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SatI GCNGC 2 cut(s) 89, 151
Sau3AI GATC 2 cut(s) 48, 63
Sau96I GGNCC 2 cut(s) 167, 208
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 106
SetI ASST 6 cut(s) 25, 29, 93, 169, 193, 239
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 2 cut(s) 167, 208
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 111, 185
SsiI CCGC 1 cut(s) 151
SspMI CTAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 1 cut(s) 239
TasI AATT 2 cut(s) 111, 185
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 153
TseI GCWGC 1 cut(s) 88
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 167, 208
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.