Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

33434671 .. 33437818

Gene Structure 3148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2925 bp

ATGGTACTGGTAGGCTCCCCTTTTTGGCATAATCTCCTCCACATTTCTTTCATTTTCCTTTTCCTTCCACAGTGTTGTTTCTGCGTTGGTGACCTTGACGCACTGTTGATGCTCAAGAAAGCCATGATTGGCCCCAAAGGTTCAGGGCTAGAGAACTGGGACCCCTCTTCTCAGTACTACTGCTCCTTCTCTGGAGTTTCATGTGACCACCAATCACGAGTTGTTGCTCTCAACGTGTCCGGTTTGCCTCTGTTTGGCTCGCTTCCGGCGGAGATTGGGCTTCTGAACAAGCTCGTCAACCTCACCATTGCCAACAACAACTTAACAAGGAGTCTTCCCCGGGAGATGGCCAACCTGACTTGTTTAAAGCTCTTGAACATCTCCAACAACTTGTTCAGTGGAAGATTTCCCGGAGAAGTCACGCTTAGAATGACAGAGCTTGAGGTTCTCGACGCCAATGACAACAACTTCACTGGTCCACTTCCGGTAGCGCTCGTCAAACTCAAAAAGATCAAACATCTACATCTTGGCGGGAACTACTTCGCCGGAGAAATTCCCGAAAGTTATTCAAAGATTCAAAGCTTAGAATATTTGGGCCTGCACGCTAACTCGCTTGGCGGAAAGTTTCCGCCCAGCTTGGCTCTGTTGCAGAATCTCAAGGAATTGTACGTTGGTTACTACAACACTTACAGCGGTGGAATTCCACCAGAGTTGGGAACGATGGAGTCGCTGCAAGTGCTTGACATGGCCAGCTGTAACCTCACCGGCACGATTCCTGTCAGTCTAGGCTTTTTGAAGAACTTACGCGCGTTGTTTCTACATATTAACCATTTGAGTGGTTATATACCTCCAAAACTTTCAGGTATGGTGAGTCTGATGTCTTTGGATCTCTCTATTAACGAACTCACCGGAGAAATACCAGAAAGTCTCTCGGAGCTCAAGAACCTTACCCTGCTCAACCTGTTTAAGAACAATTTTTACGGCCCGATACCCAACTTCATCGGCGATCTTCCTCATCTGGAGGTGCTTCAACTTTGGGAGAACAAGTTTACATTTGAACTACCTGAGAGTCTTGGCCGGAATGGAAGGCTCAAATACCTCGATGTAGCCGGTAACCACCTCACCGGGTTCATTCCTCGGGATTTGTGCAAAGGAGGGGGGTTAAAGACGTTGATTCTGAAGGAGAACCACTTATTTGGGCCGATTCCGGAGGCATTGGGTCGGTGCAAGTCGCTAGTCAAAATCAGATTGGGGAAAAACACACTCAACGGGACTATTCCTGCCGGAATCTTCAGCTTGCCTGATGTGAACATGATTAAGCTCAATGGTAATTACCTGTCCGGAGAACTACCGATGCAGCTGTCTAGTGCCTCACTCAGATTCCTCGCTCTTTCTAGTAATCAAATTTCTGGAAGAATCCCACCTACCATTGGAAATCTCCGGAATTTACAAACTCTTTCACTAGATATGAACAGATTCTCTGGGCCAGTACCCGAGGAAATCTTCAGTTTACAATTGCTAGAGAAACTCAACATCAGCACCAACAATTTTGGTGGTGAAATTCCGGCTTCAATCTCTGGTTGTTCCTCTCTAATGTCCCTAGATTTTAGTCAAAACACTTTTGTCGGGGAAATCCCAAGAGGGATAGACAAACTGACAGTAATTGGCATTCTTAATTTCTCAAGGAACAACCTGACAGGTCCAATACCTACGGTATTCAGATACATGTCGAGCCTCACAACTTTGGATCTCTCCTATAACAATTTCATTGGTAGGATCCCAACCGGAGGTCAGTTTTTATGGTGGAATGCTTCGTTTGAAGGAAATCCCAATCTGTGTTCGCCGGAAAAGGTGTTATGCAGCTCTGACAACCACCCACGACCTCGAGACCATGAAGTCATCACCGTTGGACTGACCGGAGCTCTGCTAACTTTGCTACTCATGCTGCTTCTTATATATGTAGTTATCAGGGTTTATAGGAAGAGGAAGACCAGAAAGATAGAGAAATGTGGCTCTTGGAAGCTAACAGTTTTCCAAGTACAGCTCGATCTCAACATAAAGGATGTTCTCCAGTGTCTAAAAGCAGAGAACATTATCGGCAGGGGTGGTGCTGGAGTTGTCTACCGGGGGACAATGCCAAATGGTGGTGATATTGCAATCAAACAGCTGCAGAGGGATCAGGGATTTTCAGCTGAAATTAAAACATTGGGACAAATCAAGCACCGAAATATAGTGCGGCTGCTGGGGTACATGTCGAACAAGGACACGAATTTGTTGCTGTACGAGTACATGCCTAATGGTAGCTTGGGACAACTTTTGCGTGGGCCTAATGGAAGGCATTTGGAGTGGGAAATCAGGTACAAGATTGCTGTGGAAGCTGCCAAGGGATTGTGTTATCTCCACCATGACTGTTCGCCTCTGATTATACACAGGGATGTAAAGTCCCATAACATCTTGCTGGACTCTAACTTTGAAGCTCATGTTGCTGACTTTGGGCTTGCCAAGTACTTTCAAGGACCAACAGATTGCATGTCTTCGCTTGCTGGTACCTTTGGTTACATTGCCCCAGAGTACGGTTGCACACTACAAGTGGATGAGAAAATCGATGTGTACAGCTTTGGTGTGGTTCTGCTGGAACTAGTAACAGGGAGGAAACCAGTGGTGCAACTAGTCGACGAACCTGTGAACCTAGTAACTTGGGTAAGGGAAACCACATCAGAAATCCCTCAGTCATCCAATGCATCATCTGTCCTTGCAGTTGTAGACTCTAGGCTCAGTAAGTTCCCATTGGCAGGTGTCGAGCATATGTTCAAGGTAGCGATGATGTGCGTCAAGAATCACAGCTCTTCAAGACCTACAGTGAGGGAAGTAGTCTACTTGCTCACTAATCCTCCTCCTCCTACTCCAGGCATGACAAACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

974

Amino Acids

107.42

Weight (kDa)

8.51

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 69	1.3e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	165 - 277	1.3e-09	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	694 - 958	4.1e-39	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	695 - 958	3.1e-42	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2783
AasI	GACNNNNNNGTC	1 cut(s)	1895
Acc36I	ACCTGC	1 cut(s)	2783
Acc65I	GGTACC	1 cut(s)	2546
AccB1I	GGYRCC	1 cut(s)	2546
AccB7I	CCANNNNNTGG	1 cut(s)	2144
AccI	GTMKAC	4 cut(s)	2121, 2673, 2763, 2874
AccII	CGCG	2 cut(s)	807, 809
AccIII	TCCGGA	3 cut(s)	1207, 1340, 1440
AciI	CCGC	6 cut(s)	269, 531, 618, 629, 693, 2236
AclWI	GGATC	5 cut(s)	894, 1755, 1771, 1784, 2184
AcoI	YGGCCR	3 cut(s)	348, 747, 1075
AcsI	RAATTY	6 cut(s)	552, 699, 1404, 1444, 1560, 2269
AcuI	CTGAAG	3 cut(s)	1199, 1276, 1489
AcyI	GRCGYC	1 cut(s)	453
AfeI	AGCGCT	1 cut(s)	492
AflIII	ACRYGT	3 cut(s)	234, 1725, 2250
AhlI	ACTAGT	2 cut(s)	2638, 2668
AjnI	CCWGG	1 cut(s)	2905
AjuI	GAANNNNNNNTTGG	4 cut(s)	377, 409, 654, 686
Alw21I	GWGCWC	2 cut(s)	939, 1924
Alw26I	GTCTC	2 cut(s)	932, 1881
AlwI	GGATC	5 cut(s)	894, 1755, 1771, 1784, 2184
Ama87I	CYCGRG	4 cut(s)	339, 1137, 1493, 1884
Aor13HI	TCCGGA	3 cut(s)	1207, 1340, 1440
Aor51HI	AGCGCT	1 cut(s)	492
AoxI	GGCC	9 cut(s)	130, 348, 595, 747, 982, 1075, 1199, 1484, 2324
ApeKI	GCWGC	7 cut(s)	730, 1357, 1860, 1945, 2167, 2239, 2378
ApoI	RAATTY	6 cut(s)	552, 699, 1404, 1444, 1560, 2269
ArsI	GACNNNNNNTTYG	2 cut(s)	2453, 2485
Asp700I	GAANNNNTTC	2 cut(s)	539, 1475
Asp718I	GGTACC	1 cut(s)	2546
AspLEI	GCGC	2 cut(s)	493, 809
AsuC2I	CCSGG	5 cut(s)	340, 341, 411, 1126, 2126
AsuHPI	GGTGA	9 cut(s)	101, 295, 754, 880, 898, 1114, 1568, 1894, 2159
AvaI	CYCGRG	4 cut(s)	339, 1137, 1493, 1884
AvaII	GGWCC	4 cut(s)	160, 476, 1700, 2516
BalI	TGGCCA	2 cut(s)	350, 749
BamHI	GGATCC	1 cut(s)	1776
BanI	GGYRCC	1 cut(s)	2546
BanII	GRGCYC	2 cut(s)	939, 1924
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	3 cut(s)	326, 1994, 2526
Bbv12I	GWGCWC	2 cut(s)	939, 1924
BbvI	GCAGC	7 cut(s)	717, 1369, 1872, 1932, 2154, 2226, 2365
BccI	CCATC	2 cut(s)	340, 715
BceAI	ACGGC	1 cut(s)	997
BcgI	CGANNNNNNTGC	2 cut(s)	2257, 2291
BciT130I	CCWGG	1 cut(s)	2907
BcnI	CCSGG	5 cut(s)	340, 341, 411, 1126, 2126
BcoDI	GTCTC	2 cut(s)	932, 1881
BcuI	ACTAGT	2 cut(s)	2638, 2668
BfmI	CTRYAG	2 cut(s)	2168, 2856
BfoI	RGCGCY	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	2783
BisI	GCNGC	8 cut(s)	731, 1358, 1861, 1946, 2168, 2237, 2240, 2379
BlsI	GCNGC	8 cut(s)	732, 1359, 1862, 1947, 2169, 2238, 2241, 2380
BmcAI	AGTACT	2 cut(s)	176, 2507
Bme1390I	CCNGG	6 cut(s)	340, 341, 411, 1126, 2126, 2907
Bme18I	GGWCC	4 cut(s)	160, 476, 1700, 2516
BmeT110I	CYCGRG	4 cut(s)	339, 1137, 1493, 1884
BmiI	GGNNCC	6 cut(s)	16, 133, 161, 162, 1778, 2548
BmrFI	CCNGG	6 cut(s)	340, 341, 411, 1126, 2126, 2907
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	3 cut(s)	99, 1344, 2750
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	3 cut(s)	326, 1994, 2526
BpmI	CTGGAG	5 cut(s)	213, 1040, 2054, 2133, 2889
BpuEI	CTTGAG	5 cut(s)	98, 461, 641, 923, 1666
BpuMI	CCSGG	5 cut(s)	340, 341, 411, 1126, 2126
Bsa29I	ATCGAT	1 cut(s)	2604
BsaHI	GRCGYC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	1881
BsaJI	CCNNGG	6 cut(s)	338, 339, 1136, 1494, 2125, 2382
BsaWI	WCCGGW	8 cut(s)	239, 484, 908, 1207, 1340, 1440, 1784, 1916
BsaXI	ACNNNNNCTCC	6 cut(s)	167, 197, 1031, 1061, 2875, 2905
Bse118I	RCCGGY	2 cut(s)	764, 1109
Bse1I	ACTGG	6 cut(s)	12, 161, 478, 1487, 2071, 2657
Bse3DI	GCAATG	2 cut(s)	306, 2559
BseAI	TCCGGA	3 cut(s)	1207, 1340, 1440
BseBI	CCWGG	1 cut(s)	2907
BseCI	ATCGAT	1 cut(s)	2604
BseDI	CCNNGG	6 cut(s)	338, 339, 1136, 1494, 2125, 2382
BseGI	GGATG	4 cut(s)	2068, 2440, 2599, 2732
BseMI	GCAATG	2 cut(s)	306, 2559
BseMII	CTCAG	5 cut(s)	185, 1056, 1390, 2741, 2788
BseNI	ACTGG	6 cut(s)	12, 161, 478, 1487, 2071, 2657
BseRI	GAGGAG	3 cut(s)	26, 2883, 2886
BseXI	GCAGC	7 cut(s)	717, 1369, 1872, 1932, 2154, 2226, 2365
BseYI	CCCAGC	2 cut(s)	632, 2242
BsgI	GTGCAG	1 cut(s)	584
Bsh1236I	CGCG	2 cut(s)	807, 809
BshFI	GGCC	9 cut(s)	132, 350, 597, 749, 984, 1077, 1201, 1486, 2326
BshNI	GGYRCC	1 cut(s)	2546
BshVI	ATCGAT	1 cut(s)	2604
BsiHKAI	GWGCWC	2 cut(s)	939, 1924
BsiHKCI	CYCGRG	4 cut(s)	339, 1137, 1493, 1884
BslFI	GGGAC	7 cut(s)	173, 1285, 1582, 2143, 2223, 2322, 2428
BsmAI	GTCTC	2 cut(s)	932, 1881
BsmFI	GGGAC	7 cut(s)	173, 1285, 1582, 2143, 2223, 2322, 2428
BsmI	GAATGC	2 cut(s)	1668, 1813
BsnI	GGCC	9 cut(s)	132, 350, 597, 749, 984, 1077, 1201, 1486, 2326
Bso31I	GGTCTC	1 cut(s)	1881
BsoBI	CYCGRG	4 cut(s)	339, 1137, 1493, 1884
Bsp1286I	GDGCHC	2 cut(s)	939, 1924
Bsp13I	TCCGGA	3 cut(s)	1207, 1340, 1440
Bsp1407I	TGTACA	1 cut(s)	2610
Bsp143I	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
BspACI	CCGC	6 cut(s)	269, 531, 618, 629, 693, 2236
BspANI	GGCC	9 cut(s)	132, 350, 597, 749, 984, 1077, 1201, 1486, 2326
BspCNI	CTCAG	5 cut(s)	184, 1057, 1389, 2740, 2787
BspDI	ATCGAT	1 cut(s)	2604
BspEI	TCCGGA	3 cut(s)	1207, 1340, 1440
BspFNI	CGCG	2 cut(s)	807, 809
BspLI	GGNNCC	6 cut(s)	16, 133, 161, 162, 1778, 2548
BspMAI	CTGCAG	1 cut(s)	2172
BspMI	ACCTGC	1 cut(s)	2783
BspPI	GGATC	5 cut(s)	894, 1755, 1771, 1784, 2184
BspQI	GCTCTTC	1 cut(s)	2851
BspT107I	GGYRCC	1 cut(s)	2546
BspTNI	GGTCTC	1 cut(s)	1881
BsrDI	GCAATG	2 cut(s)	306, 2559
BsrFI	RCCGGY	2 cut(s)	764, 1109
BsrGI	TGTACA	1 cut(s)	2610
BsrI	ACTGG	6 cut(s)	12, 161, 478, 1487, 2071, 2657
BssAI	RCCGGY	2 cut(s)	764, 1109
BssECI	CCNNGG	6 cut(s)	338, 339, 1136, 1494, 2125, 2382
BssMI	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
BssNI	GRCGYC	1 cut(s)	453
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	2382
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	2907
Bst4CI	ACNGT	9 cut(s)	72, 105, 1660, 1714, 1906, 2029, 2411, 2576, 2860
Bst6I	CTCTTC	3 cut(s)	172, 1976, 2851
BstACI	GRCGYC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	2610
BstC8I	GCNNGC	7 cut(s)	260, 599, 603, 751, 1298, 2499, 2541
BstDEI	CTNAG	8 cut(s)	171, 425, 583, 1065, 1376, 2727, 2774, 2922
BstEII	GGTNACC	2 cut(s)	89, 1112
BstENI	CCTNNNNNAGG	1 cut(s)	2904
BstF5I	GGATG	4 cut(s)	2068, 2440, 2599, 2732
BstFNI	CGCG	2 cut(s)	807, 809
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	493, 809
BstKTI	GATC	7 cut(s)	513, 889, 1009, 1750, 1779, 2050, 2179
BstMAI	GTCTC	2 cut(s)	932, 1881
BstMBI	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
BstMWI	GCNNNNNNNGC	5 cut(s)	736, 1933, 1942, 2375, 2483
BstNI	CCWGG	1 cut(s)	2907
BstNSI	RCATGY	4 cut(s)	1729, 2254, 2293, 2533
BstPI	GGTNACC	2 cut(s)	89, 1112
BstSCI	CCNGG	6 cut(s)	338, 339, 409, 1124, 2124, 2905
BstSFI	CTRYAG	2 cut(s)	2168, 2856
BstUI	CGCG	2 cut(s)	807, 809
BstV1I	GCAGC	7 cut(s)	717, 1369, 1872, 1932, 2154, 2226, 2365
BstV2I	GAAGAC	3 cut(s)	326, 1994, 2526
BstX2I	RGATCY	3 cut(s)	886, 1747, 1776
BstXI	CCANNNNNNTGG	2 cut(s)	836, 1196
BstYI	RGATCY	3 cut(s)	886, 1747, 1776
Bsu15I	ATCGAT	1 cut(s)	2604
BsuRI	GGCC	9 cut(s)	132, 350, 597, 749, 984, 1077, 1201, 1486, 2326
BsuTUI	ATCGAT	1 cut(s)	2604
BtgZI	GCGATG	1 cut(s)	2834
BtsCI	GGATG	4 cut(s)	2068, 2440, 2599, 2732
BtsIMutI	CAGTG	7 cut(s)	77, 101, 403, 471, 2078, 2664, 2865
BveI	ACCTGC	1 cut(s)	2783
Cac8I	GCNNGC	7 cut(s)	260, 599, 603, 751, 1298, 2499, 2541
CfoI	GCGC	2 cut(s)	493, 809
Cfr10I	RCCGGY	2 cut(s)	764, 1109
Cfr9I	CCCGGG	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	2604
CseI	GACGC	3 cut(s)	107, 461, 2818
CspCI	CAANNNNNGTGG	4 cut(s)	693, 728, 1534, 1569
DdeI	CTNAG	8 cut(s)	171, 425, 583, 1065, 1376, 2727, 2774, 2922
DpnI	GATC	7 cut(s)	512, 888, 1008, 1749, 1778, 2049, 2178
DpnII	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
DraI	TTTAAA	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	1895
DseDI	GACNNNNNNGTC	1 cut(s)	1895
EaeI	YGGCCR	3 cut(s)	348, 747, 1075
Eam1104I	CTCTTC	3 cut(s)	172, 1976, 2851
EarI	CTCTTC	3 cut(s)	172, 1976, 2851
EciI	GGCGGA	3 cut(s)	284, 618, 633
Ecl136II	GAGCTC	2 cut(s)	937, 1922
Eco130I	CCWWGG	1 cut(s)	2382
Eco24I	GRGCYC	2 cut(s)	939, 1924
Eco31I	GGTCTC	1 cut(s)	1881
Eco47I	GGWCC	4 cut(s)	160, 476, 1700, 2516
Eco47III	AGCGCT	1 cut(s)	492
Eco53kI	GAGCTC	2 cut(s)	937, 1922
Eco57I	CTGAAG	3 cut(s)	1199, 1276, 1489
Eco88I	CYCGRG	4 cut(s)	339, 1137, 1493, 1884
Eco91I	GGTNACC	2 cut(s)	89, 1112
EcoICRI	GAGCTC	2 cut(s)	937, 1922
EcoNI	CCTNNNNNAGG	1 cut(s)	2904
EcoO109I	RGGNCCY	1 cut(s)	160
EcoO65I	GGTNACC	2 cut(s)	89, 1112
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	2905
EcoT14I	CCWWGG	1 cut(s)	2382
EcoT22I	ATGCAT	1 cut(s)	2743
EcoT38I	GRGCYC	2 cut(s)	939, 1924
ErhI	CCWWGG	1 cut(s)	2382
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	7 cut(s)	173, 1285, 1582, 2143, 2223, 2322, 2428
FauI	CCCGC	1 cut(s)	524
FauNDI	CATATG	1 cut(s)	2805
FblI	GTMKAC	4 cut(s)	2121, 2673, 2763, 2874
Fnu4HI	GCNGC	8 cut(s)	731, 1358, 1861, 1946, 2168, 2237, 2240, 2379
FokI	GGATG	4 cut(s)	2075, 2447, 2606, 2719
FriOI	GRGCYC	2 cut(s)	939, 1924
Fsp4HI	GCNGC	8 cut(s)	731, 1358, 1861, 1946, 2168, 2237, 2240, 2379
GlaI	GCGC	2 cut(s)	492, 808
GluI	GCNGC	8 cut(s)	731, 1358, 1861, 1946, 2168, 2237, 2240, 2379
GsaI	CCCAGC	2 cut(s)	636, 2246
GsuI	CTGGAG	5 cut(s)	213, 1040, 2054, 2133, 2889
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	9 cut(s)	132, 350, 597, 749, 984, 1077, 1201, 1486, 2326
HgaI	GACGC	3 cut(s)	107, 461, 2818
HhaI	GCGC	2 cut(s)	493, 809
Hin1I	GRCGYC	1 cut(s)	453
Hin6I	GCGC	2 cut(s)	491, 807
HinP1I	GCGC	2 cut(s)	491, 807
HincII	GTYRAC	2 cut(s)	298, 2674
HindII	GTYRAC	2 cut(s)	298, 2674
HindIII	AAGCTT	1 cut(s)	580
HphI	GGTGA	9 cut(s)	101, 295, 754, 880, 898, 1114, 1568, 1894, 2159
Hpy99I	CGWCG	2 cut(s)	455, 2678
HpyAV	CCTTC	6 cut(s)	74, 196, 1080, 1174, 1814, 2328
HpyCH4III	ACNGT	9 cut(s)	72, 105, 1660, 1714, 1906, 2029, 2411, 2576, 2860
HpyCH4IV	ACGT	3 cut(s)	234, 669, 1169
HpyF10VI	GCNNNNNNNGC	5 cut(s)	736, 1933, 1942, 2375, 2483
HpyF3I	CTNAG	8 cut(s)	171, 425, 583, 1065, 1376, 2727, 2774, 2922
HpySE526I	ACGT	3 cut(s)	234, 669, 1169
Hsp92I	GRCGYC	1 cut(s)	453
HspAI	GCGC	2 cut(s)	491, 807
KflI	GGGWCCC	1 cut(s)	160
Kpn2I	TCCGGA	3 cut(s)	1207, 1340, 1440
KpnI	GGTACC	1 cut(s)	2550
Kzo9I	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
LguI	GCTCTTC	1 cut(s)	2851
LmnI	GCTCC	4 cut(s)	20, 188, 934, 1919
Lsp1109I	GCAGC	7 cut(s)	717, 1369, 1872, 1932, 2154, 2226, 2365
LweI	GCATC	3 cut(s)	99, 1344, 2750
MaeII	ACGT	3 cut(s)	234, 669, 1169
MaeIII	GTNAC	9 cut(s)	89, 203, 418, 674, 755, 1112, 2555, 2641, 2692
MalI	GATC	7 cut(s)	512, 888, 1008, 1749, 1778, 2049, 2178
MboI	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
MfeI	CAATTG	1 cut(s)	1514
MflI	RGATCY	3 cut(s)	886, 1747, 1776
MhlI	GDGCHC	2 cut(s)	939, 1924
MlsI	TGGCCA	2 cut(s)	350, 749
MluNI	TGGCCA	2 cut(s)	350, 749
MlyI	GAGTC	6 cut(s)	340, 734, 880, 1078, 2456, 2759
MmeI	TCCRAC	2 cut(s)	408, 1888
Mox20I	TGGCCA	2 cut(s)	350, 749
Mph1103I	ATGCAT	1 cut(s)	2743
MroI	TCCGGA	3 cut(s)	1207, 1340, 1440
MroXI	GAANNNNTTC	2 cut(s)	539, 1475
MscI	TGGCCA	2 cut(s)	350, 749
MseI	TTAA	9 cut(s)	323, 365, 825, 897, 966, 1163, 1317, 1674, 2199
MslI	CAYNNNNRTG	2 cut(s)	834, 2433
Msp20I	TGGCCA	2 cut(s)	350, 749
MspA1I	CMGCKG	5 cut(s)	693, 753, 1360, 2167, 2192
MspR9I	CCNGG	6 cut(s)	340, 341, 411, 1126, 2126, 2907
MunI	CAATTG	1 cut(s)	1514
Mva1269I	GAATGC	2 cut(s)	1668, 1813
MvaI	CCWGG	1 cut(s)	2907
MvnI	CGCG	2 cut(s)	807, 809
MwoI	GCNNNNNNNGC	5 cut(s)	736, 1933, 1942, 2375, 2483
NciI	CCSGG	5 cut(s)	340, 341, 411, 1126, 2126
NdeI	CATATG	1 cut(s)	2805
NdeII	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
NlaIV	GGNNCC	6 cut(s)	16, 133, 161, 162, 1778, 2548
NmuCI	GTSAC	3 cut(s)	89, 203, 418
NsiI	ATGCAT	1 cut(s)	2743
NspI	RCATGY	4 cut(s)	1729, 2254, 2293, 2533
PaeR7I	CTCGAG	1 cut(s)	1884
PaqCI	CACCTGC	1 cut(s)	2783
PciI	ACATGT	2 cut(s)	1725, 2250
PciSI	GCTCTTC	1 cut(s)	2851
PctI	GAATGC	2 cut(s)	1668, 1813
PdmI	GAANNNNTTC	2 cut(s)	539, 1475
PflMI	CCANNNNNTGG	1 cut(s)	2144
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	8 cut(s)	732, 1359, 1862, 1947, 2169, 2238, 2241, 2380
PleI	GAGTC	6 cut(s)	339, 733, 879, 1077, 2456, 2759
PpsI	GAGTC	6 cut(s)	339, 733, 879, 1077, 2456, 2759
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	2 cut(s)	1725, 2250
Psp124BI	GAGCTC	2 cut(s)	939, 1924
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	2905
PspEI	GGTNACC	2 cut(s)	89, 1112
PspFI	CCCAGC	2 cut(s)	632, 2242
PspGI	CCWGG	1 cut(s)	2905
PspN4I	GGNNCC	6 cut(s)	16, 133, 161, 162, 1778, 2548
PspPPI	RGGWCCY	1 cut(s)	160
PsrI	GAACNNNNNNTAC	2 cut(s)	962, 994
PstI	CTGCAG	1 cut(s)	2172
PsuI	RGATCY	3 cut(s)	886, 1747, 1776
PvuII	CAGCTG	4 cut(s)	753, 1360, 2167, 2192
RseI	CAYNNNNRTG	2 cut(s)	834, 2433
SacI	GAGCTC	2 cut(s)	939, 1924
SalI	GTCGAC	1 cut(s)	2672
SapI	GCTCTTC	1 cut(s)	2851
SaqAI	TTAA	9 cut(s)	323, 365, 825, 897, 966, 1163, 1317, 1674, 2199
SatI	GCNGC	8 cut(s)	731, 1358, 1861, 1946, 2168, 2237, 2240, 2379
Sau3AI	GATC	7 cut(s)	510, 886, 1006, 1747, 1776, 2047, 2176
ScaI	AGTACT	2 cut(s)	176, 2507
SchI	GAGTC	6 cut(s)	340, 734, 880, 1078, 2456, 2759
ScrFI	CCNGG	6 cut(s)	340, 341, 411, 1126, 2126, 2907
SduI	GDGCHC	2 cut(s)	939, 1924
SfaNI	GCATC	3 cut(s)	99, 1344, 2750
SfcI	CTRYAG	2 cut(s)	2168, 2856
Sfr274I	CTCGAG	1 cut(s)	1884
SinI	GGWCC	4 cut(s)	160, 476, 1700, 2516
SlaI	CTCGAG	1 cut(s)	1884
SmaI	CCCGGG	1 cut(s)	341
SmiMI	CAYNNNNRTG	2 cut(s)	834, 2433
SmlI	CTYRAG	6 cut(s)	113, 440, 656, 938, 1681, 1884
SmoI	CTYRAG	6 cut(s)	113, 440, 656, 938, 1681, 1884
SpeI	ACTAGT	2 cut(s)	2638, 2668
SsiI	CCGC	6 cut(s)	269, 531, 618, 629, 693, 2236
SspI	AATATT	1 cut(s)	590
SstI	GAGCTC	2 cut(s)	939, 1924
StyD4I	CCNGG	6 cut(s)	338, 339, 409, 1124, 2124, 2905
StyI	CCWWGG	1 cut(s)	2382
TaaI	ACNGT	9 cut(s)	72, 105, 1660, 1714, 1906, 2029, 2411, 2576, 2860
TaiI	ACGT	3 cut(s)	237, 672, 1172
TaqI	TCGA	9 cut(s)	450, 1101, 1730, 1885, 2046, 2255, 2604, 2673, 2799
TatI	WGTACW	5 cut(s)	174, 2038, 2286, 2505, 2610
TauI	GCSGC	1 cut(s)	2239
Tru1I	TTAA	9 cut(s)	323, 365, 825, 897, 966, 1163, 1317, 1674, 2199
Tru9I	TTAA	9 cut(s)	323, 365, 825, 897, 966, 1163, 1317, 1674, 2199
TscAI	CASTG	7 cut(s)	77, 108, 403, 478, 2078, 2664, 2865
TseFI	GTSAC	3 cut(s)	89, 203, 418
TseI	GCWGC	7 cut(s)	730, 1357, 1860, 1945, 2167, 2239, 2378
Tsp45I	GTSAC	3 cut(s)	89, 203, 418
TspDTI	ATGAA	7 cut(s)	40, 189, 988, 1120, 1484, 1756, 1908
TspMI	CCCGGG	1 cut(s)	339
TspRI	CASTG	7 cut(s)	77, 108, 403, 478, 2078, 2664, 2865
Van91I	CCANNNNNTGG	1 cut(s)	2144
VpaK11BI	GGWCC	4 cut(s)	160, 476, 1700, 2516
XagI	CCTNNNNNAGG	1 cut(s)	2904
XapI	RAATTY	6 cut(s)	552, 699, 1404, 1444, 1560, 2269
XceI	RCATGY	4 cut(s)	1729, 2254, 2293, 2533
XhoI	CTCGAG	1 cut(s)	1884
XmaI	CCCGGG	1 cut(s)	339
XmiI	GTMKAC	4 cut(s)	2121, 2673, 2763, 2874
XmnI	GAANNNNTTC	2 cut(s)	539, 1475
ZrmI	AGTACT	2 cut(s)	176, 2507
Zsp2I	ATGCAT	1 cut(s)	2743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.