Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001822.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

113917 .. 116875

Gene Structure 2959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001822.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

atgctcaagaaagccatgattggccccaaaggttcagggctagagaactgggacccctcttctcattactactgctccttctctggagtttcatgtgaccaccaatcacgagttgttgctctcaacgtgtccggtttgtctctgtttggctcgcttccggcggagattcggcttctgaacaagctcgtcaacctcaccattgccaacaacaacttaacagggagtcttccccgggagatggccaacctgacttgtttaaagctcttgaacatctccaccaacttgttcgttggaagatttcccggagaaatcacgctcagaatgacagagcttgaggttctcgacgcctatgacaacaacttcactggtccacttccggtagagctcgtcaaactcaaaaagatcaaacatctaaatcttggtgggaactacttcgccggagaaattcccgaaagttattcaaagattcaaagcttagaatatttgggcctgcacgttaacttgcttggcggaaagtttccgcccagcttggctctgttgcagaatctcaaggaattgtacgttggttacgacaacacttacagcggtggaattccacctgagttgggaacgatggagtcattgcaagtgcttgacatggccagctgtaacctcaccggcacgattccggccagtctagcctttttgaagaacttacgcgggttgtttctatatattaaccgtttgagtggttatatacctccacaacttgcaggtatggtgagtctgaagtctttggatctctctattaacgaacttaccggagaaataccagaaagtctctcagagttcaagaaccttgccctactcaacctgtatgagaacaatttttacggcccgatacccaacttcatcggcgatcttcctcatctggaggtgcttcaagtttgggggaacaactttacatttgaactacctgagagtcttggccggaatggaaggctcaaagacctcgatgtaaccagtaaccacctcaccgggttgattcctcgagatttgtgcaaaggagggaggttaagggcgttggttctgatggataatcacttctttgggccgattccggaggaattgggtcggtgcaagtcgctcgggcatatcctattgatgaaaaacacactcaacgggactattcctgccggaatctttaataacttacctgatttgatcaggattgagctgaatgataactacttgtctggaaaacttccattgcagatgtcgggtgcctcactcgaaattctcacactttcccggaatcagatttctggaaaaatcccatccaccattggaaccctcaagaatttaaaacatcttttgctagatgggaacaaattctccgggcaagtaccaacagagatcttcagtttacaattgctaagtaaactcaacatgagcaccaacaatattggtggtgaaattccggcttcaatctctggttgttcctctctgacgttcctagattttagtcaaaacacttttgttggggaaatcccaagagggataagtaagctgaaagtaattcagtttcttaatttttcaaggaacaagctaacaggtccaatacctgtggaattcatatacatggggagcctcacaaatttggatctctcctataacaatttcattggtaggatcccagccggaggtcagtttttatggtcgaatgcttggtttgaaggaaatcccaatctgtgttcggcggaaaaggtgttgtgcagctctgataaccacccacgagctcgagaccataaagtcatactcactggagctctgctaactttgctactcatgttgcttcttatatatgtagttatcagggtttataggaagaggaagaccacaaagatagagaaatgtggttcttggaagctaacagttttccaagtacatctcaatctcaacatagaagacgttctccagtgtctaaaagcagagaacattatcggcaggggtggtgctggaattgtctaccgggggacaatgccaaatggtggtgatattgcaatcaaacagctgcagagggatcagggattttcagctgaaattaaaacattgggacaaatcaagcaccgaaatatagtgcggctgctggggtacatgtcgaacaaggacacgaatttgttgctgtacgagtacatgcctaatggtagcttgggacaacttttgcgtgggcctaatggagggcatttggggtgggaaatcaggtacaagattgctgtggaagctgccaagggattgtgttatctccaccatgactgttcgcctctgattatacacagggatataaagtcggataacatcttgctggactctaactttgaagctcatgttgctgactttgggcttgccaagtactttcaaggaccaacagattgcatgtcttcgcttgctggtacctttggttacattgccccagagtacggttgcacactacaagtggatgagaaaatcgatgtgtacagctttggtgtggttctgctggaactagtaacagggaggaaaccagtggtgcaactagccgacgaacctgtgaacctagtaacttgggtaagcgaaaccacatcagaaatccctcagtcatccaatgcatcatctgtacttgcagttgtggactctaggctcagtgagttcccattggcaggtgtcgagcatatgttcaagatagcgatgatgtgcgtcaagaatcacagctcttcaagacctacaatgagggaagtagtctacttgctcgctaatcctcctccttctgctccaggcatgacaaacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

936

Amino Acids

103.0

Weight (kDa)

7.81

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2669
AasI	GACNNNNNNGTC	1 cut(s)	1790
Acc36I	ACCTGC	2 cut(s)	743, 2669
Acc65I	GGTACC	1 cut(s)	2432
AccB1I	GGYRCC	2 cut(s)	1262, 2432
AccB7I	CCANNNNNTGG	1 cut(s)	2030
AccI	GTMKAC	2 cut(s)	2007, 2760
AccII	CGCG	1 cut(s)	699
AccIII	TCCGGA	1 cut(s)	1099
AciI	CCGC	7 cut(s)	161, 510, 521, 585, 699, 1739, 2122
AclWI	GGATC	5 cut(s)	786, 1650, 1666, 1679, 2070
AcoI	YGGCCR	4 cut(s)	240, 639, 669, 967
AcsI	RAATTY	9 cut(s)	444, 591, 1275, 1339, 1370, 1455, 1610, 1636, 2155
AcuI	CTGAAG	2 cut(s)	788, 1384
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 2030, 2219, 2459, 2678
AflIII	ACRYGT	2 cut(s)	126, 2136
AhlI	ACTAGT	1 cut(s)	2524
AjnI	CCWGG	1 cut(s)	2791
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AloI	GAACNNNNNNTCC	2 cut(s)	1358, 1390
Alw21I	GWGCWC	4 cut(s)	387, 1436, 1780, 1810
Alw26I	GTCTC	3 cut(s)	144, 824, 1776
AlwI	GGATC	5 cut(s)	786, 1650, 1666, 1679, 2070
Ama87I	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
Aor13HI	TCCGGA	1 cut(s)	1099
AoxI	GGCC	9 cut(s)	22, 240, 487, 639, 669, 874, 967, 1091, 2210
ApeKI	GCWGC	4 cut(s)	1755, 2053, 2125, 2264
ApoI	RAATTY	9 cut(s)	444, 591, 1275, 1339, 1370, 1455, 1610, 1636, 2155
ArsI	GACNNNNNNTTYG	2 cut(s)	2339, 2371
Asp700I	GAANNNNTTC	3 cut(s)	431, 1370, 1950
Asp718I	GGTACC	1 cut(s)	2432
AspS9I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2210, 2402
AsuC2I	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012
AsuHPI	GGTGA	6 cut(s)	187, 646, 772, 1006, 1463, 2045
AvaI	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
AvaII	GGWCC	4 cut(s)	52, 368, 1595, 2402
BalI	TGGCCA	2 cut(s)	242, 641
BamHI	GGATCC	1 cut(s)	1671
BanI	GGYRCC	2 cut(s)	1262, 2432
BanII	GRGCYC	3 cut(s)	387, 1780, 1810
BauI	CACGAG	2 cut(s)	108, 1773
BbsI	GAAGAC	4 cut(s)	218, 1880, 1953, 2412
Bbv12I	GWGCWC	4 cut(s)	387, 1436, 1780, 1810
BbvI	GCAGC	4 cut(s)	1767, 2040, 2112, 2251
BccI	CCATC	5 cut(s)	232, 607, 1066, 1324, 1355
BceAI	ACGGC	1 cut(s)	889
BcgI	CGANNNNNNTGC	6 cut(s)	1020, 1054, 1108, 1142, 2143, 2177
BciT130I	CCWGG	1 cut(s)	2793
BclI	TGATCA	1 cut(s)	1203
BcnI	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012
BcoDI	GTCTC	3 cut(s)	144, 824, 1776
BcuI	ACTAGT	1 cut(s)	2524
BfaI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2525, 2555, 2576, 2655
BfmI	CTRYAG	1 cut(s)	2054
BfuAI	ACCTGC	2 cut(s)	743, 2669
BglII	AGATCT	1 cut(s)	1395
BisI	GCNGC	5 cut(s)	1756, 2054, 2123, 2126, 2265
BlsI	GCNGC	5 cut(s)	1757, 2055, 2124, 2127, 2266
BmcAI	AGTACT	1 cut(s)	2393
Bme1390I	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012, 2793
Bme18I	GGWCC	4 cut(s)	52, 368, 1595, 2402
BmeT110I	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
BmgT120I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2210, 2402
BmiI	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2434
BmrFI	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012, 2793
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	2636
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	4 cut(s)	218, 1880, 1953, 2412
BpmI	CTGGAG	5 cut(s)	105, 932, 1824, 1940, 2775
BpuEI	CTTGAG	3 cut(s)	353, 533, 1319
BpuMI	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012
Bsa29I	ATCGAT	1 cut(s)	2490
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	1776
BsaJI	CCNNGG	4 cut(s)	230, 231, 2011, 2268
BsaWI	WCCGGW	4 cut(s)	131, 376, 800, 1099
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 1358, 1388
Bsc4I	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 2030, 2219, 2459, 2678
Bse118I	RCCGGY	1 cut(s)	656
Bse1I	ACTGG	7 cut(s)	53, 370, 672, 1002, 1807, 1957, 2543
Bse3DI	GCAATG	4 cut(s)	198, 620, 1247, 2445
BseAI	TCCGGA	1 cut(s)	1099
BseBI	CCWGG	1 cut(s)	2793
BseCI	ATCGAT	1 cut(s)	2490
BseDI	CCNNGG	4 cut(s)	230, 231, 2011, 2268
BseGI	GGATG	3 cut(s)	1316, 2485, 2618
BseLI	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 2030, 2219, 2459, 2678
BseMI	GCAATG	4 cut(s)	198, 620, 1247, 2445
BseMII	CTCAG	6 cut(s)	331, 591, 837, 948, 2627, 2674
BseNI	ACTGG	7 cut(s)	53, 370, 672, 1002, 1807, 1957, 2543
BseRI	GAGGAG	1 cut(s)	2769
BseXI	GCAGC	4 cut(s)	1767, 2040, 2112, 2251
BseYI	CCCAGC	3 cut(s)	524, 1675, 2128
BsgI	GTGCAG	2 cut(s)	476, 1774
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	9 cut(s)	24, 242, 489, 641, 671, 876, 969, 1093, 2212
BshNI	GGYRCC	2 cut(s)	1262, 2432
BshVI	ATCGAT	1 cut(s)	2490
BsiHKAI	GWGCWC	4 cut(s)	387, 1436, 1780, 1810
BsiHKCI	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
BslFI	GGGAC	5 cut(s)	65, 1177, 2029, 2109, 2208
BslI	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 2030, 2219, 2459, 2678
BsmAI	GTCTC	3 cut(s)	144, 824, 1776
BsmFI	GGGAC	5 cut(s)	65, 1177, 2029, 2109, 2208
BsmI	GAATGC	1 cut(s)	1708
BsnI	GGCC	9 cut(s)	24, 242, 489, 641, 671, 876, 969, 1093, 2212
Bso31I	GGTCTC	1 cut(s)	1776
BsoBI	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
Bsp1286I	GDGCHC	4 cut(s)	387, 1436, 1780, 1810
Bsp13I	TCCGGA	1 cut(s)	1099
Bsp1407I	TGTACA	1 cut(s)	2496
Bsp143I	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
BspACI	CCGC	7 cut(s)	161, 510, 521, 585, 699, 1739, 2122
BspANI	GGCC	9 cut(s)	24, 242, 489, 641, 671, 876, 969, 1093, 2212
BspCNI	CTCAG	6 cut(s)	330, 592, 836, 949, 2626, 2673
BspDI	ATCGAT	1 cut(s)	2490
BspEI	TCCGGA	1 cut(s)	1099
BspFNI	CGCG	1 cut(s)	699
BspLI	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2434
BspMAI	CTGCAG	1 cut(s)	2058
BspMI	ACCTGC	2 cut(s)	743, 2669
BspPI	GGATC	5 cut(s)	786, 1650, 1666, 1679, 2070
BspQI	GCTCTTC	1 cut(s)	2737
BspT107I	GGYRCC	2 cut(s)	1262, 2432
BspTNI	GGTCTC	1 cut(s)	1776
BsrDI	GCAATG	4 cut(s)	198, 620, 1247, 2445
BsrFI	RCCGGY	1 cut(s)	656
BsrGI	TGTACA	1 cut(s)	2496
BsrI	ACTGG	7 cut(s)	53, 370, 672, 1002, 1807, 1957, 2543
BssAI	RCCGGY	1 cut(s)	656
BssECI	CCNNGG	4 cut(s)	230, 231, 2011, 2268
BssMI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
BssNI	GRCGYC	1 cut(s)	345
BssSI	CACGAG	2 cut(s)	108, 1773
BssT1I	CCWWGG	1 cut(s)	2268
Bst2BI	CACGAG	2 cut(s)	108, 1773
Bst2UI	CCWGG	1 cut(s)	2793
Bst4CI	ACNGT	4 cut(s)	722, 1915, 2297, 2462
Bst6I	CTCTTC	3 cut(s)	64, 1862, 2737
BstACI	GRCGYC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	2496
BstC8I	GCNNGC	6 cut(s)	152, 491, 643, 2385, 2427, 2769
BstDEI	CTNAG	9 cut(s)	317, 475, 600, 823, 957, 1415, 2613, 2660, 2808
BstENI	CCTNNNNNAGG	1 cut(s)	2217
BstF5I	GGATG	3 cut(s)	1316, 2485, 2618
BstFNI	CGCG	1 cut(s)	699
BstKTI	GATC	8 cut(s)	405, 781, 901, 1206, 1398, 1645, 1674, 2065
BstMAI	GTCTC	3 cut(s)	144, 824, 1776
BstMBI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
BstMWI	GCNNNNNNNGC	4 cut(s)	677, 1819, 2261, 2369
BstNI	CCWGG	1 cut(s)	2793
BstNSI	RCATGY	3 cut(s)	2140, 2179, 2419
BstSCI	CCNGG	8 cut(s)	230, 231, 301, 1016, 1289, 1376, 2010, 2791
BstSFI	CTRYAG	1 cut(s)	2054
BstUI	CGCG	1 cut(s)	699
BstV1I	GCAGC	4 cut(s)	1767, 2040, 2112, 2251
BstV2I	GAAGAC	4 cut(s)	218, 1880, 1953, 2412
BstX2I	RGATCY	4 cut(s)	778, 1395, 1642, 1671
BstYI	RGATCY	4 cut(s)	778, 1395, 1642, 1671
Bsu15I	ATCGAT	1 cut(s)	2490
BsuRI	GGCC	9 cut(s)	24, 242, 489, 641, 671, 876, 969, 1093, 2212
BsuTUI	ATCGAT	1 cut(s)	2490
BtgZI	GCGATG	1 cut(s)	2720
BtsCI	GGATG	3 cut(s)	1316, 2485, 2618
BtsIMutI	CAGTG	5 cut(s)	363, 1800, 1964, 2550, 2668
BveI	ACCTGC	2 cut(s)	743, 2669
Cac8I	GCNNGC	6 cut(s)	152, 491, 643, 2385, 2427, 2769
Cfr10I	RCCGGY	1 cut(s)	656
Cfr13I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2210, 2402
Cfr9I	CCCGGG	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	2490
CseI	GACGC	2 cut(s)	353, 2704
CspCI	CAANNNNNGTGG	6 cut(s)	585, 620, 1429, 1464, 1587, 1622
DdeI	CTNAG	9 cut(s)	317, 475, 600, 823, 957, 1415, 2613, 2660, 2808
DpnI	GATC	8 cut(s)	404, 780, 900, 1205, 1397, 1644, 1673, 2064
DpnII	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
DraI	TTTAAA	2 cut(s)	258, 1344
DrdI	GACNNNNNNGTC	1 cut(s)	1790
DseDI	GACNNNNNNGTC	1 cut(s)	1790
EaeI	YGGCCR	4 cut(s)	240, 639, 669, 967
Eam1104I	CTCTTC	3 cut(s)	64, 1862, 2737
EarI	CTCTTC	3 cut(s)	64, 1862, 2737
EciI	GGCGGA	4 cut(s)	176, 510, 525, 1754
Ecl136II	GAGCTC	3 cut(s)	385, 1778, 1808
Eco130I	CCWWGG	1 cut(s)	2268
Eco24I	GRGCYC	3 cut(s)	387, 1780, 1810
Eco31I	GGTCTC	1 cut(s)	1776
Eco47I	GGWCC	4 cut(s)	52, 368, 1595, 2402
Eco53kI	GAGCTC	3 cut(s)	385, 1778, 1808
Eco57I	CTGAAG	2 cut(s)	788, 1384
Eco88I	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
EcoICRI	GAGCTC	3 cut(s)	385, 1778, 1808
EcoNI	CCTNNNNNAGG	1 cut(s)	2217
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRI	GAATTC	2 cut(s)	591, 1610
EcoRII	CCWGG	1 cut(s)	2791
EcoT14I	CCWWGG	1 cut(s)	2268
EcoT22I	ATGCAT	1 cut(s)	2629
EcoT38I	GRGCYC	3 cut(s)	387, 1780, 1810
ErhI	CCWWGG	1 cut(s)	2268
FaqI	GGGAC	5 cut(s)	65, 1177, 2029, 2109, 2208
FauI	CCCGC	1 cut(s)	692
FauNDI	CATATG	1 cut(s)	2691
FbaI	TGATCA	1 cut(s)	1203
FblI	GTMKAC	2 cut(s)	2007, 2760
Fnu4HI	GCNGC	5 cut(s)	1756, 2054, 2123, 2126, 2265
FokI	GGATG	3 cut(s)	1303, 2492, 2605
FriOI	GRGCYC	3 cut(s)	387, 1780, 1810
Fsp4HI	GCNGC	5 cut(s)	1756, 2054, 2123, 2126, 2265
FspBI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2525, 2555, 2576, 2655
GluI	GCNGC	5 cut(s)	1756, 2054, 2123, 2126, 2265
GsaI	CCCAGC	3 cut(s)	528, 1679, 2132
GsuI	CTGGAG	5 cut(s)	105, 932, 1824, 1940, 2775
HaeIII	GGCC	9 cut(s)	24, 242, 489, 641, 671, 876, 969, 1093, 2212
HgaI	GACGC	2 cut(s)	353, 2704
Hin1I	GRCGYC	1 cut(s)	345
HincII	GTYRAC	2 cut(s)	190, 499
HindII	GTYRAC	2 cut(s)	190, 499
HindIII	AAGCTT	1 cut(s)	472
HpaI	GTTAAC	1 cut(s)	499
HphI	GGTGA	6 cut(s)	187, 646, 772, 1006, 1463, 2045
Hpy99I	CGWCG	2 cut(s)	347, 2564
HpyAV	CCTTC	4 cut(s)	88, 972, 1709, 2793
HpyCH4III	ACNGT	4 cut(s)	722, 1915, 2297, 2462
HpyCH4IV	ACGT	5 cut(s)	126, 495, 561, 1490, 1950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	677, 1819, 2261, 2369
HpyF3I	CTNAG	9 cut(s)	317, 475, 600, 823, 957, 1415, 2613, 2660, 2808
HpySE526I	ACGT	5 cut(s)	126, 495, 561, 1490, 1950
Hsp92I	GRCGYC	1 cut(s)	345
KflI	GGGWCCC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	1099
KpnI	GGTACC	1 cut(s)	2436
Ksp22I	TGATCA	1 cut(s)	1203
KspAI	GTTAAC	1 cut(s)	499
Kzo9I	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
LguI	GCTCTTC	1 cut(s)	2737
LmnI	GCTCC	4 cut(s)	80, 1626, 1805, 2794
Lsp1109I	GCAGC	4 cut(s)	1767, 2040, 2112, 2251
LweI	GCATC	1 cut(s)	2636
MaeI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2525, 2555, 2576, 2655
MaeII	ACGT	5 cut(s)	126, 495, 561, 1490, 1950
MaeIII	GTNAC	8 cut(s)	95, 566, 647, 997, 1004, 2441, 2527, 2578
MalI	GATC	8 cut(s)	404, 780, 900, 1205, 1397, 1644, 1673, 2064
MboI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
MfeI	CAATTG	1 cut(s)	1409
MflI	RGATCY	4 cut(s)	778, 1395, 1642, 1671
MhlI	GDGCHC	4 cut(s)	387, 1436, 1780, 1810
MlsI	TGGCCA	2 cut(s)	242, 641
MluNI	TGGCCA	2 cut(s)	242, 641
MlyI	GAGTC	6 cut(s)	232, 626, 772, 970, 2342, 2645
MmeI	TCCRAC	2 cut(s)	271, 2310
Mox20I	TGGCCA	2 cut(s)	242, 641
Mph1103I	ATGCAT	1 cut(s)	2629
MroI	TCCGGA	1 cut(s)	1099
MroXI	GAANNNNTTC	3 cut(s)	431, 1370, 1950
MscI	TGGCCA	2 cut(s)	242, 641
MslI	CAYNNNNRTG	1 cut(s)	1619
Msp20I	TGGCCA	2 cut(s)	242, 641
MspA1I	CMGCKG	4 cut(s)	585, 645, 2053, 2078
MspR9I	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012, 2793
MunI	CAATTG	1 cut(s)	1409
Mva1269I	GAATGC	1 cut(s)	1708
MvaI	CCWGG	1 cut(s)	2793
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	677, 1819, 2261, 2369
NciI	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012
NdeI	CATATG	1 cut(s)	2691
NdeII	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
NlaIV	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2434
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	2629
NspI	RCATGY	3 cut(s)	2140, 2179, 2419
PaeR7I	CTCGAG	2 cut(s)	1029, 1779
PaqCI	CACCTGC	1 cut(s)	2669
PciI	ACATGT	1 cut(s)	2136
PciSI	GCTCTTC	1 cut(s)	2737
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	1708
PdmI	GAANNNNTTC	3 cut(s)	431, 1370, 1950
PfeI	GAWTC	9 cut(s)	166, 466, 544, 664, 1024, 1096, 1179, 1294, 2722
PflMI	CCANNNNNTGG	1 cut(s)	2030
PfoI	TCCNGGA	2 cut(s)	301, 1289
PkrI	GCNGC	5 cut(s)	1757, 2055, 2124, 2127, 2266
PleI	GAGTC	6 cut(s)	231, 625, 771, 969, 2342, 2645
PpsI	GAGTC	6 cut(s)	231, 625, 771, 969, 2342, 2645
PpuMI	RGGWCCY	1 cut(s)	52
PscI	ACATGT	1 cut(s)	2136
Psp124BI	GAGCTC	3 cut(s)	387, 1780, 1810
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	2791
PspFI	CCCAGC	3 cut(s)	524, 1675, 2128
PspGI	CCWGG	1 cut(s)	2791
PspN4I	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2434
PspPI	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2210, 2402
PspPPI	RGGWCCY	1 cut(s)	52
PsrI	GAACNNNNNNTAC	2 cut(s)	854, 886
PstI	CTGCAG	1 cut(s)	2058
PsuI	RGATCY	4 cut(s)	778, 1395, 1642, 1671
PvuII	CAGCTG	3 cut(s)	645, 2053, 2078
RseI	CAYNNNNRTG	1 cut(s)	1619
SacI	GAGCTC	3 cut(s)	387, 1780, 1810
SapI	GCTCTTC	1 cut(s)	2737
SatI	GCNGC	5 cut(s)	1756, 2054, 2123, 2126, 2265
Sau3AI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 2062
Sau96I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2210, 2402
ScaI	AGTACT	1 cut(s)	2393
SchI	GAGTC	6 cut(s)	232, 626, 772, 970, 2342, 2645
ScrFI	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 2012, 2793
SduI	GDGCHC	4 cut(s)	387, 1436, 1780, 1810
SfaNI	GCATC	1 cut(s)	2636
SfcI	CTRYAG	1 cut(s)	2054
Sfr274I	CTCGAG	2 cut(s)	1029, 1779
SinI	GGWCC	4 cut(s)	52, 368, 1595, 2402
SlaI	CTCGAG	2 cut(s)	1029, 1779
SmaI	CCCGGG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	1619
SmlI	CTYRAG	6 cut(s)	5, 332, 548, 1029, 1334, 1779
SmoI	CTYRAG	6 cut(s)	5, 332, 548, 1029, 1334, 1779
SpeI	ACTAGT	1 cut(s)	2524
SsiI	CCGC	7 cut(s)	161, 510, 521, 585, 699, 1739, 2122
SspI	AATATT	2 cut(s)	482, 1444
SspMI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2525, 2555, 2576, 2655
SstI	GAGCTC	3 cut(s)	387, 1780, 1810
StyD4I	CCNGG	8 cut(s)	230, 231, 301, 1016, 1289, 1376, 2010, 2791
StyI	CCWWGG	1 cut(s)	2268
TaaI	ACNGT	4 cut(s)	722, 1915, 2297, 2462
TaiI	ACGT	5 cut(s)	129, 498, 564, 1493, 1953
TaqI	TCGA	9 cut(s)	342, 993, 1030, 1272, 1700, 1780, 2141, 2490, 2685
TatI	WGTACW	5 cut(s)	1924, 2172, 2391, 2496, 2635
TauI	GCSGC	1 cut(s)	2125
TfiI	GAWTC	9 cut(s)	166, 466, 544, 664, 1024, 1096, 1179, 1294, 2722
TscAI	CASTG	5 cut(s)	370, 1807, 1964, 2550, 2668
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	4 cut(s)	1755, 2053, 2125, 2264
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	5 cut(s)	81, 880, 1160, 1603, 1651
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	5 cut(s)	370, 1807, 1964, 2550, 2668
Van91I	CCANNNNNTGG	1 cut(s)	2030
VpaK11BI	GGWCC	4 cut(s)	52, 368, 1595, 2402
XagI	CCTNNNNNAGG	1 cut(s)	2217
XapI	RAATTY	9 cut(s)	444, 591, 1275, 1339, 1370, 1455, 1610, 1636, 2155
XceI	RCATGY	3 cut(s)	2140, 2179, 2419
XhoI	CTCGAG	2 cut(s)	1029, 1779
XmaI	CCCGGG	1 cut(s)	231
XmiI	GTMKAC	2 cut(s)	2007, 2760
XmnI	GAANNNNTTC	3 cut(s)	431, 1370, 1950
XspI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2525, 2555, 2576, 2655
ZrmI	AGTACT	1 cut(s)	2393
Zsp2I	ATGCAT	1 cut(s)	2629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.