Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

33394503 .. 33395297

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCAGATTTCGGCTGCCTCACTTGAATTCCTCACACTCTCCCGGAATCAGATTTCTGGAAAAATCCCATCCACCATCGGAACCCTCAAGAATTTACAGAAGCTTGAGCTGGCTATGAACAGATTCTCTGGGCAAGTTCCAAAAGAAATATTCAGTTTACAATCGTTATACATACTCAACATGAGCACCAACAAATTCGGTGGTGAAATTCCAGCTGCAATTTCTGATTGTTCCTCTCTAACATCCCTAGATTTTAGTCAAAACAGTTTAGTTGGAGAAATCCCAAGAGGGATAGGCAAACTGAAAGTAATCGAGTTTCTTAATTTCTCAAGGAACAAGCTAACAGGTCCAATACCTGTGGAATTCAGATACATGGCGAACCTCACAATTTTGGATCTCTCCTATAACAATTTCACTGGTAGGATCCCAACTGGAGGTCAGTTTTTATCAGACATCGCTTCGTTTGAAGGAAATCCACATCTGTGTTCGCCGAGAAATGTGTCATGCAGCTCCTATAACCACCCACGACCTCGAGACCATAAAGTCATCATCGCTGGACTCACTGGAGCTCTGCTACCTTTGCTACTCATGCCGCTTCTCATACATGTACTTATCTGGGTTTATAGGAATAGAAAGATCAGAATGATTGAGAGATGTGGATCTTGGAAGCTCACAGTTTTCCAAGTACAGCATGATCTCAAAATAGAGGACGTTCTCCAGTGTCTAAACGCAGAGAACATTATCGGCAGGGGCGGTGCTGGAGTTGTCTACCGGGGGACAATGCCAAACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

29.25

Weight (kDa)

9.48

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	7 - 85	3.1e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	2 cut(s)	593, 753
AclWI	GGATC	4 cut(s)	402, 418, 431, 667
AcsI	RAATTY	5 cut(s)	26, 91, 194, 207, 362
AfaI	GTAC	2 cut(s)	609, 687
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	2 cut(s)	26, 467
AleI	CACNNNNGTG	1 cut(s)	481
AluBI	AGCT	7 cut(s)	103, 109, 215, 340, 510, 569, 670
AluI	AGCT	7 cut(s)	103, 109, 215, 340, 510, 569, 670
Alw21I	GWGCWC	2 cut(s)	188, 571
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	4 cut(s)	402, 418, 431, 667
Ama87I	CYCGRG	1 cut(s)	531
ApeKI	GCWGC	3 cut(s)	14, 215, 507
ApoI	RAATTY	5 cut(s)	26, 91, 194, 207, 362
Asp700I	GAANNNNTTC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	347
AsuC2I	CCSGG	2 cut(s)	43, 773
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	531
AvaII	GGWCC	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	423
BanII	GRGCYC	1 cut(s)	571
Bbv12I	GWGCWC	2 cut(s)	188, 571
BbvI	GCAGC	2 cut(s)	202, 519
BccI	CCATC	2 cut(s)	76, 83
BcnI	CCSGG	2 cut(s)	43, 773
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	4 cut(s)	15, 216, 508, 593
BlsI	GCNGC	4 cut(s)	16, 217, 509, 594
Bme1390I	CCNGG	2 cut(s)	43, 773
Bme18I	GGWCC	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	82, 425
BmrFI	CCNGG	2 cut(s)	43, 773
BpmI	CTGGAG	4 cut(s)	453, 585, 701, 780
BpuEI	CTTGAG	3 cut(s)	71, 125, 313
BpuMI	CCSGG	2 cut(s)	43, 773
BsaBI	GATNNNNATC	1 cut(s)	658
BsaI	GGTCTC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	4 cut(s)	421, 436, 568, 718
Bse8I	GATNNNNATC	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	2 cut(s)	68, 242
BseJI	GATNNNNATC	1 cut(s)	658
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseNI	ACTGG	4 cut(s)	421, 436, 568, 718
BseXI	GCAGC	2 cut(s)	202, 519
BsiHKAI	GWGCWC	2 cut(s)	188, 571
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	43, 772
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	790
Bso31I	GGTCTC	1 cut(s)	528
BsoBI	CYCGRG	1 cut(s)	531
Bsp1286I	GDGCHC	2 cut(s)	188, 571
Bsp143I	GATC	5 cut(s)	394, 423, 636, 659, 694
BspACI	CCGC	2 cut(s)	593, 753
BspLI	GGNNCC	2 cut(s)	82, 425
BspPI	GGATC	4 cut(s)	402, 418, 431, 667
BspTNI	GGTCTC	1 cut(s)	528
BsrI	ACTGG	4 cut(s)	421, 436, 568, 718
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	5 cut(s)	394, 423, 636, 659, 694
Bst4CI	ACNGT	3 cut(s)	266, 676, 791
BstC8I	GCNNGC	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	68, 242
BstKTI	GATC	5 cut(s)	397, 426, 639, 662, 697
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	5 cut(s)	394, 423, 636, 659, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	580, 589
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	2 cut(s)	41, 771
BstV1I	GCAGC	2 cut(s)	202, 519
BstX2I	RGATCY	3 cut(s)	394, 423, 659
BstYI	RGATCY	3 cut(s)	394, 423, 659
BtgZI	GCGATG	2 cut(s)	439, 535
BtsCI	GGATG	2 cut(s)	68, 242
BtsIMutI	CAGTG	3 cut(s)	414, 561, 725
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	608, 686
CspCI	CAANNNNNGTGG	4 cut(s)	181, 216, 339, 374
CviAII	CATG	6 cut(s)	181, 373, 504, 589, 605, 692
CviJI	RGCY	9 cut(s)	14, 103, 109, 113, 215, 340, 510, 569, 670
CviKI_1	RGCY	9 cut(s)	14, 103, 109, 113, 215, 340, 510, 569, 670
CviQI	GTAC	2 cut(s)	608, 686
DpnI	GATC	5 cut(s)	396, 425, 638, 661, 696
DpnII	GATC	5 cut(s)	394, 423, 636, 659, 694
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
Ecl136II	GAGCTC	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	569
EcoRI	GAATTC	2 cut(s)	26, 362
EcoT38I	GRGCYC	1 cut(s)	571
FaeI	CATG	6 cut(s)	184, 376, 507, 592, 608, 695
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	6 cut(s)	180, 372, 503, 588, 604, 691
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	15, 216, 508, 593
FokI	GGATG	2 cut(s)	55, 229
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	4 cut(s)	15, 216, 508, 593
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	4 cut(s)	15, 216, 508, 593
GsuI	CTGGAG	4 cut(s)	453, 585, 701, 780
HapII	CCGG	2 cut(s)	43, 772
Hin1II	CATG	6 cut(s)	184, 376, 507, 592, 608, 695
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	46, 123, 558
HpaII	CCGG	2 cut(s)	43, 772
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	158, 769
Hpy188I	TCNGA	6 cut(s)	51, 80, 226, 368, 451, 641
Hpy188III	TCNNGA	3 cut(s)	57, 88, 533
Hpy8I	GTNNAC	2 cut(s)	158, 769
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	266, 676, 791
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	3 cut(s)	4, 218, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	580, 589
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	6 cut(s)	184, 376, 507, 592, 608, 695
Kzo9I	GATC	5 cut(s)	394, 423, 636, 659, 694
LmnI	GCTCC	2 cut(s)	515, 566
Lsp1109I	GCAGC	2 cut(s)	202, 519
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	711
MalI	GATC	5 cut(s)	396, 425, 638, 661, 696
MboI	GATC	5 cut(s)	394, 423, 636, 659, 694
MflI	RGATCY	3 cut(s)	394, 423, 659
MhlI	GDGCHC	2 cut(s)	188, 571
MluCI	AATT	9 cut(s)	26, 91, 194, 207, 219, 322, 362, 387, 409
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	9 cut(s)	28, 41, 95, 244, 281, 392, 428, 540, 700
MroXI	GAANNNNTTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	481
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	43, 772
MspR9I	CCNGG	2 cut(s)	43, 773
MwoI	GCNNNNNNNGC	2 cut(s)	580, 589
NciI	CCSGG	2 cut(s)	43, 773
NdeII	GATC	5 cut(s)	394, 423, 636, 659, 694
NlaIII	CATG	6 cut(s)	184, 376, 507, 592, 608, 695
NlaIV	GGNNCC	2 cut(s)	82, 425
NmeAIII	GCCGAG	1 cut(s)	516
NspI	RCATGY	1 cut(s)	608
OliI	CACNNNNGTG	1 cut(s)	481
PaeR7I	CTCGAG	1 cut(s)	531
PciI	ACATGT	1 cut(s)	604
PdmI	GAANNNNTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	46, 123
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	4 cut(s)	16, 217, 509, 594
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PscI	ACATGT	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	82, 425
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	3 cut(s)	394, 423, 659
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	609, 687
RsaNI	GTAC	2 cut(s)	608, 686
RseI	CAYNNNNRTG	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	571
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	15, 216, 508, 593
Sau3AI	GATC	5 cut(s)	394, 423, 636, 659, 694
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	43, 773
SduI	GDGCHC	2 cut(s)	188, 571
Sfr274I	CTCGAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	4 cut(s)	86, 104, 328, 531
SmoI	CTYRAG	4 cut(s)	86, 104, 328, 531
Sse9I	AATT	9 cut(s)	26, 91, 194, 207, 219, 322, 362, 387, 409
SsiI	CCGC	2 cut(s)	593, 753
SspI	AATATT	1 cut(s)	150
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	2 cut(s)	41, 771
TaaI	ACNGT	3 cut(s)	266, 676, 791
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	312, 532
TasI	AATT	9 cut(s)	26, 91, 194, 207, 219, 322, 362, 387, 409
TatI	WGTACW	2 cut(s)	607, 685
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	2 cut(s)	46, 123
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	421, 568, 725
TseI	GCWGC	3 cut(s)	14, 215, 507
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	3 cut(s)	421, 568, 725
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	5 cut(s)	26, 91, 194, 207, 362
XceI	RCATGY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	122
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.