Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

32151642 .. 32152088

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG289200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGAGCCTCACAACTTTGGATCTCTCCTATAACAATTTCATTGGAAGGATCCCAACCGGATGTCAGTTTGTTGAGTTCGAATTTGATGGAAATCCACATTTGCGTTCGCCGAGAAATGTTTCAGCCATCATCGCTGGACTCACTGTAGGCTCTGGAGCTCTGCTAGCTATGCTACTCAAGTTGCTTATCGTACGTGTAAGGATCAGGGTTTATAGGAAGAGAAAGATCAGAGAGATTGAGAAAAGTGGCTCTTGGAAGCTCACAGTTTTCCAAGTACAGATTGATCTCAATATAGAGGACATTCTCCAGTGTCTAAATGCAGAGAACATTATAGGCAGGGGCAGTGCTGGAGTTGTCTACTGGGGGACAATGCCAAACGGTGATTATGTGGCCATCAAAAGGTTGCAGAGGGATCATGGATTTTCGGCTGAAATAAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.57

Weight (kDa)

9.64

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AclWI	GGATC	5 cut(s)	30, 46, 59, 212, 423
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	2 cut(s)	195, 279
AfiI	CCNNNNNNNGG	1 cut(s)	402
AflIII	ACRYGT	1 cut(s)	196
AluBI	AGCT	3 cut(s)	161, 170, 262
AluI	AGCT	3 cut(s)	161, 170, 262
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	5 cut(s)	30, 46, 59, 212, 423
AoxI	GGCC	1 cut(s)	393
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	81
AsuNHI	GCTAGC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BccI	CCATC	3 cut(s)	83, 137, 404
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	373
BpmI	CTGGAG	3 cut(s)	177, 293, 372
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse1I	ACTGG	2 cut(s)	310, 368
Bse8I	GATNNNNATC	1 cut(s)	93
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	310, 368
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	60
BsiWI	CGTACG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	5 cut(s)	30, 46, 59, 212, 423
BspT104I	TTCGAA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	310, 368
BssMI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
Bst4CI	ACNGT	3 cut(s)	148, 268, 383
Bst6I	CTCTTC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	7, 168
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	6 cut(s)	25, 54, 207, 231, 289, 418
BstMBI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 167, 172
BstSFI	CTRYAG	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	22, 51
BstYI	RGATCY	2 cut(s)	22, 51
BsuRI	GGCC	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	3 cut(s)	144, 317, 352
Cac8I	GCNNGC	2 cut(s)	7, 168
Csp6I	GTAC	2 cut(s)	194, 278
CviAII	CATG	1 cut(s)	419
CviJI	RGCY	9 cut(s)	9, 128, 153, 161, 170, 252, 262, 395, 431
CviKI_1	RGCY	9 cut(s)	9, 128, 153, 161, 170, 252, 262, 395, 431
CviQI	GTAC	2 cut(s)	194, 278
DpnI	GATC	6 cut(s)	24, 53, 206, 230, 288, 417
DpnII	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	422
FaiI	YATR	7 cut(s)	33, 173, 216, 296, 335, 390, 420
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	163
FspBI	CTAG	1 cut(s)	167
GsuI	CTGGAG	3 cut(s)	177, 293, 372
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	1 cut(s)	422
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	3 cut(s)	148, 268, 383
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	2 cut(s)	323, 409
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 167, 172
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	422
Kzo9I	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	73, 123, 141, 193, 323, 325, 336, 349
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	196
MalI	GATC	6 cut(s)	24, 53, 206, 230, 288, 417
MboI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	2 cut(s)	22, 51
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	2 cut(s)	37, 83
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	20, 292, 405
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	1 cut(s)	445
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	134, 167, 172
NdeII	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	121
Pfl23II	CGTACG	1 cut(s)	193
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Ppu21I	YACGTR	1 cut(s)	197
Psp124BI	GAGCTC	1 cut(s)	163
PspLI	CGTACG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	22, 51
RsaI	GTAC	2 cut(s)	195, 279
RsaNI	GTAC	2 cut(s)	194, 278
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	445
Sau3AI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	163, 172, 199, 264, 407
SfcI	CTRYAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	37, 83
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	163
TaaI	ACNGT	3 cut(s)	148, 268, 383
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	37, 83
TatI	WGTACW	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TscAI	CASTG	3 cut(s)	151, 317, 352
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	151, 317, 352
XapI	RAATTY	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.