Rh2DG303400
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
36360478 .. 36361545
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG303400.1

Sequence Viewer

Length: 1068 bp
ATGATTGGACCCCAAGGTTCAGGGAAAGACGACTGGGAGCGCTCTTCCCACAACTACTGCTCCTTCTCTGGAGTTTCATGTGACCACCAGTCACGAGTGGTTGCTCTTAACGTTTCCAGTTTGCATCTGTTTGGCTCGGTTCCCGCGGAGATTGGACTTCTGAACAAGCTCGTCAACCTCACCCTTGCCGACAACAGCTTAGGAGGGAGCCTTCCCCGGGAGATCGCCAACCTGACTTCTTTAAGGCTCTTGAACATCTCCAACCACTTGTTTAGTGGAAGATTTCCCGGAGAAATGACAGAGCTTGAGGTTCTCGATGCCTATATTAACGACTTCACTGGTCAACTTCCGGTAGATCAGCTCGTTAATCTCAAAAAGCTCAAACATCTAGATCTTGGCGGTAACCAATTCACCGGAGAAATTCCCGGAAATTATTCAATGATTCAAAGCTTGGAGTATCTAGGCCTCAACGGTATCGGGCTCACCGGAAAGTTCCCTTCCAGTTTGGCTCAGTTGAAGAATCTCAAGGAATTGCACGTGGTCTATAACAAATTCGAAGGTGGACTTCCTGAGTTGGGAACGATGGAGTCGTTGCAAGTGCTTGACATGGTCAACTGTAACCTCAACGGCACGATTCCTATCAGTCTAGGCTTTTTGAAGAACTTACGCGCGTTGGATCTCTCAAATAACGAACTCTCCGGAGAAATACCGGAGAGTTTCTCAAAGCTCAAGAATCTTATCCTTCTCAACCTGTGTGAAAACAATCTCTACGGCCAGATAACTCCAGAACTTTCAGGTATGGTGAGTCTGACGGCTTTAGATCTGTCTTATAACAAATTCACCGGAGAAATACCGGAGAGTTTCTCAGAGCTCAAGAACCTTAGCCTTCTCACACTGTCTAGCAACAATCTCTACGGCCAGATACCCAACTTCATCGGTGATCTTCCTCATCTGGAGGCGCTTCTAGTTTCGGAGAACAACTTCACATTTGCTCTACCGGAGAGTCTTGGCCGGAATGGAAGGTTCAAAGACCTCGATGTAAGCGGAAACCACCTTTTACCGGCTTGA

Protein Analysis

355

Amino Acids

38.72

Weight (kDa)

4.98

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 45 - 131 3.4e-07 Leucine-rich repeat region
LRR_14 PF23598 103 - 227 1.2e-11 Leucine-rich repeat region
LRR_8 PF13855 221 - 280 9.5e-09 Leucine rich repeat
LRR_8 PF13855 249 - 304 2.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AccII CGCG 3 cut(s) 146, 669, 671
AccIII TCCGGA 1 cut(s) 698
AciI CCGC 4 cut(s) 144, 146, 399, 1044
AclI AACGTT 1 cut(s) 111
AclWI GGATC 1 cut(s) 684
AcoI YGGCCR 3 cut(s) 772, 916, 1009
AcsI RAATTY 3 cut(s) 420, 551, 836
AcvI CACGTG 1 cut(s) 538
AfeI AGCGCT 1 cut(s) 41
AfiI CCNNNNNNNGG 3 cut(s) 217, 575, 1060
AgsI TTSAA 6 cut(s) 253, 438, 446, 517, 658, 1027
AhdI GACNNNNNGTC 1 cut(s) 88
AluBI AGCT 8 cut(s) 169, 198, 304, 361, 379, 450, 727, 871
AluI AGCT 8 cut(s) 169, 198, 304, 361, 379, 450, 727, 871
Alw21I GWGCWC 1 cut(s) 873
AlwI GGATC 1 cut(s) 684
Ama87I CYCGRG 1 cut(s) 216
Aor13HI TCCGGA 1 cut(s) 698
Aor51HI AGCGCT 1 cut(s) 41
AoxI GGCC 4 cut(s) 463, 772, 916, 1009
ApoI RAATTY 3 cut(s) 420, 551, 836
Asp700I GAANNNNTTC 2 cut(s) 433, 980
AspLEI GCGC 3 cut(s) 42, 671, 961
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 4 cut(s) 217, 218, 288, 426
AsuHPI GGTGA 6 cut(s) 172, 403, 475, 814, 832, 950
AsuII TTCGAA 1 cut(s) 555
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 8
BanII GRGCYC 2 cut(s) 483, 873
BauI CACGAG 1 cut(s) 93
BbrPI CACGTG 1 cut(s) 538
Bbv12I GWGCWC 1 cut(s) 873
BccI CCATC 1 cut(s) 577
BceAI ACGGC 4 cut(s) 643, 787, 828, 931
BcnI CCSGG 4 cut(s) 217, 218, 288, 426
BfaI CTAG 5 cut(s) 389, 461, 647, 900, 965
BfoI RGCGCY 2 cut(s) 43, 962
BglII AGATCT 2 cut(s) 391, 820
Bme1390I CCNGG 4 cut(s) 217, 218, 288, 426
Bme18I GGWCC 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 3 cut(s) 10, 141, 209
BmrFI CCNGG 4 cut(s) 217, 218, 288, 426
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 133, 307
BmuI ACTGGG 1 cut(s) 43
BplI GAGNNNNNCTC 4 cut(s) 704, 736, 848, 880
BpmI CTGGAG 3 cut(s) 90, 768, 974
Bpu10I CCTNAGC 2 cut(s) 199, 881
Bpu14I TTCGAA 1 cut(s) 555
BpuEI CTTGAG 4 cut(s) 326, 509, 713, 857
BpuMI CCSGG 4 cut(s) 217, 218, 288, 426
BsaAI YACGTR 1 cut(s) 538
BsaBI GATNNNNATC 1 cut(s) 638
BsaJI CCNNGG 4 cut(s) 13, 144, 215, 216
BsaWI WCCGGW 8 cut(s) 349, 413, 485, 698, 709, 842, 853, 997
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 680, 710
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 575, 1060
Bse118I RCCGGY 1 cut(s) 1060
Bse1I ACTGG 5 cut(s) 38, 88, 117, 343, 501
Bse8I GATNNNNATC 1 cut(s) 638
BseAI TCCGGA 1 cut(s) 698
BseDI CCNNGG 4 cut(s) 13, 144, 215, 216
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 3 cut(s) 217, 575, 1060
BseMII CTCAG 3 cut(s) 524, 561, 879
BseNI ACTGG 5 cut(s) 38, 88, 117, 343, 501
Bsh1236I CGCG 3 cut(s) 146, 669, 671
BshFI GGCC 4 cut(s) 465, 774, 918, 1011
BsiHKAI GWGCWC 1 cut(s) 873
BsiHKCI CYCGRG 1 cut(s) 216
BslI CCNNNNNNNGG 3 cut(s) 217, 575, 1060
BsnI GGCC 4 cut(s) 465, 774, 918, 1011
BsoBI CYCGRG 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 483, 873
Bsp13I TCCGGA 1 cut(s) 698
Bsp143I GATC 6 cut(s) 222, 355, 391, 676, 820, 940
BspACI CCGC 4 cut(s) 144, 146, 399, 1044
BspANI GGCC 4 cut(s) 465, 774, 918, 1011
BspCNI CTCAG 3 cut(s) 523, 562, 878
BspEI TCCGGA 1 cut(s) 698
BspFNI CGCG 3 cut(s) 146, 669, 671
BspLI GGNNCC 3 cut(s) 10, 141, 209
BspPI GGATC 1 cut(s) 684
BspQI GCTCTTC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 1060
BsrI ACTGG 5 cut(s) 38, 88, 117, 343, 501
BssAI RCCGGY 1 cut(s) 1060
BssECI CCNNGG 4 cut(s) 13, 144, 215, 216
BssMI GATC 6 cut(s) 222, 355, 391, 676, 820, 940
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 473, 617, 897
Bst6I CTCTTC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 538
BstBI TTCGAA 1 cut(s) 555
BstDEI CTNAG 5 cut(s) 199, 510, 570, 865, 881
BstDSI CCRYGG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 401
BstFNI CGCG 3 cut(s) 146, 669, 671
BstH2I RGCGCY 2 cut(s) 43, 962
BstHHI GCGC 3 cut(s) 42, 671, 961
BstKTI GATC 6 cut(s) 225, 358, 394, 679, 823, 943
BstMBI GATC 6 cut(s) 222, 355, 391, 676, 820, 940
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 4 cut(s) 215, 216, 286, 424
BstUI CGCG 3 cut(s) 146, 669, 671
BstX2I RGATCY 3 cut(s) 391, 676, 820
BstYI RGATCY 3 cut(s) 391, 676, 820
BsuRI GGCC 4 cut(s) 465, 774, 918, 1011
BtgI CCRYGG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 336, 893
CfoI GCGC 3 cut(s) 42, 671, 961
Cfr10I RCCGGY 1 cut(s) 1060
Cfr13I GGNCC 1 cut(s) 8
Cfr42I CCGCGG 1 cut(s) 147
Cfr9I CCCGGG 1 cut(s) 216
CviAII CATG 2 cut(s) 78, 607
DdeI CTNAG 5 cut(s) 199, 510, 570, 865, 881
DpnI GATC 6 cut(s) 224, 357, 393, 678, 822, 942
DpnII GATC 6 cut(s) 222, 355, 391, 676, 820, 940
DriI GACNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 3 cut(s) 772, 916, 1009
Eam1104I CTCTTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 871
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 465
Eco24I GRGCYC 2 cut(s) 483, 873
Eco47I GGWCC 1 cut(s) 8
Eco47III AGCGCT 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 871
Eco72I CACGTG 1 cut(s) 538
Eco88I CYCGRG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 871
EcoO65I GGTNACC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 2 cut(s) 483, 873
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 81, 610
FaiI YATR 6 cut(s) 79, 324, 546, 608, 800, 831
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FatI CATG 2 cut(s) 77, 606
FauI CCCGC 1 cut(s) 151
FriOI GRGCYC 2 cut(s) 483, 873
FspBI CTAG 5 cut(s) 389, 461, 647, 900, 965
GlaI GCGC 3 cut(s) 41, 670, 960
GsuI CTGGAG 3 cut(s) 90, 768, 974
HaeII RGCGCY 2 cut(s) 43, 962
HaeIII GGCC 4 cut(s) 465, 774, 918, 1011
HhaI GCGC 3 cut(s) 42, 671, 961
Hin1II CATG 2 cut(s) 81, 610
Hin6I GCGC 3 cut(s) 40, 669, 959
HinP1I GCGC 3 cut(s) 40, 669, 959
HincII GTYRAC 3 cut(s) 175, 344, 613
HindII GTYRAC 3 cut(s) 175, 344, 613
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 7 cut(s) 442, 520, 587, 634, 733, 805, 1003
HphI GGTGA 6 cut(s) 172, 403, 475, 814, 832, 950
Hpy166II GTNNAC 4 cut(s) 175, 344, 563, 613
Hpy188I TCNGA 4 cut(s) 162, 810, 868, 973
Hpy8I GTNNAC 4 cut(s) 175, 344, 563, 613
HpyAV CCTTC 7 cut(s) 73, 221, 507, 551, 752, 896, 1014
HpyCH4III ACNGT 3 cut(s) 473, 617, 897
HpyCH4IV ACGT 2 cut(s) 111, 537
HpyCH4V TGCA 3 cut(s) 124, 535, 595
HpyF3I CTNAG 5 cut(s) 199, 510, 570, 865, 881
HpySE526I ACGT 2 cut(s) 111, 537
Hsp92II CATG 2 cut(s) 81, 610
HspAI GCGC 3 cut(s) 40, 669, 959
Kpn2I TCCGGA 1 cut(s) 698
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 6 cut(s) 222, 355, 391, 676, 820, 940
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 3 cut(s) 37, 65, 207
LweI GCATC 2 cut(s) 133, 307
MaeI CTAG 5 cut(s) 389, 461, 647, 900, 965
MaeII ACGT 2 cut(s) 111, 537
MaeIII GTNAC 4 cut(s) 80, 90, 401, 617
MalI GATC 6 cut(s) 224, 357, 393, 678, 822, 942
MboI GATC 6 cut(s) 222, 355, 391, 676, 820, 940
MboII GAAGA 5 cut(s) 36, 291, 529, 670, 935
MflI RGATCY 3 cut(s) 391, 676, 820
MhlI GDGCHC 2 cut(s) 483, 873
MluCI AATT 6 cut(s) 407, 420, 430, 530, 551, 836
MlyI GAGTC 3 cut(s) 596, 814, 1012
MmeI TCCRAC 2 cut(s) 285, 654
MnlI CCTC 8 cut(s) 188, 197, 301, 476, 632, 949, 957, 1043
MroI TCCGGA 1 cut(s) 698
MroXI GAANNNNTTC 2 cut(s) 433, 980
MseI TTAA 4 cut(s) 108, 242, 327, 366
MspA1I CMGCKG 1 cut(s) 146
MspR9I CCNGG 4 cut(s) 217, 218, 288, 426
MvnI CGCG 3 cut(s) 146, 669, 671
NciI CCSGG 4 cut(s) 217, 218, 288, 426
NdeII GATC 6 cut(s) 222, 355, 391, 676, 820, 940
NlaIII CATG 2 cut(s) 81, 610
NlaIV GGNNCC 3 cut(s) 10, 141, 209
NmuCI GTSAC 2 cut(s) 80, 90
NspV TTCGAA 1 cut(s) 555
PceI AGGCCT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PdmI GAANNNNTTC 2 cut(s) 433, 980
PfeI GAWTC 4 cut(s) 442, 520, 634, 733
PflFI GACNNNGTC 1 cut(s) 608
PfoI TCCNGGA 2 cut(s) 286, 424
PleI GAGTC 3 cut(s) 595, 813, 1011
PmaCI CACGTG 1 cut(s) 538
PmlI CACGTG 1 cut(s) 538
PpsI GAGTC 3 cut(s) 595, 813, 1011
Ppu21I YACGTR 1 cut(s) 538
PsiI TTATAA 1 cut(s) 831
Psp124BI GAGCTC 1 cut(s) 873
Psp1406I AACGTT 1 cut(s) 111
PspCI CACGTG 1 cut(s) 538
PspEI GGTNACC 1 cut(s) 401
PspN4I GGNNCC 3 cut(s) 10, 141, 209
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 3 cut(s) 391, 676, 820
PsyI GACNNNGTC 1 cut(s) 608
SacI GAGCTC 1 cut(s) 873
SacII CCGCGG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 4 cut(s) 108, 242, 327, 366
Sau3AI GATC 6 cut(s) 222, 355, 391, 676, 820, 940
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 3 cut(s) 596, 814, 1012
ScrFI CCNGG 4 cut(s) 217, 218, 288, 426
SduI GDGCHC 2 cut(s) 483, 873
SfaNI GCATC 2 cut(s) 133, 307
Sfr303I CCGCGG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 555
SgrBI CCGCGG 1 cut(s) 147
SinI GGWCC 1 cut(s) 8
SmaI CCCGGG 1 cut(s) 218
SmlI CTYRAG 4 cut(s) 305, 524, 728, 872
SmoI CTYRAG 4 cut(s) 305, 524, 728, 872
Sse9I AATT 6 cut(s) 407, 420, 430, 530, 551, 836
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 4 cut(s) 144, 146, 399, 1044
SspMI CTAG 5 cut(s) 389, 461, 647, 900, 965
SstI GAGCTC 1 cut(s) 873
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 4 cut(s) 215, 216, 286, 424
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 3 cut(s) 473, 617, 897
TaiI ACGT 2 cut(s) 114, 540
TaqI TCGA 3 cut(s) 315, 555, 1035
TasI AATT 6 cut(s) 407, 420, 430, 530, 551, 836
TfiI GAWTC 4 cut(s) 442, 520, 634, 733
Tru1I TTAA 4 cut(s) 108, 242, 327, 366
Tru9I TTAA 4 cut(s) 108, 242, 327, 366
TscAI CASTG 2 cut(s) 343, 900
TseFI GTSAC 2 cut(s) 80, 90
Tsp45I GTSAC 2 cut(s) 80, 90
TspDTI ATGAA 2 cut(s) 66, 922
TspMI CCCGGG 1 cut(s) 216
TspRI CASTG 2 cut(s) 343, 900
Tth111I GACNNNGTC 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 3 cut(s) 420, 551, 836
XbaI TCTAGA 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmaI CCCGGG 1 cut(s) 216
XmnI GAANNNNTTC 2 cut(s) 433, 980
XspI CTAG 5 cut(s) 389, 461, 647, 900, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.