Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

30882290 .. 30891392

Gene Structure 9103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGGTGGTATGCACTCGTTTTTGCCATACTATCCTCCACATTTCTTTCATTTTCCTTTTGCTTCCACAATGTTGTTTCTGCGATAATGACCTTGATGCACTGTTGATGCTCAAGAAAGCCATGATTGGCCTCAAAGGTTCAGGGCTAGATGACTGGGAGCCCTCTTCTCACTCCTACTGCTTCTTCTCTGGAGTTTCATGTGACCGTCAATCACGAGTTGTTGCTCTTAACGTGTCCAGTTTGCCTCTGTTCGGCTCGATTCCAGCAGAGATTGGGCTTCTGAACAAGCTCATCAACCTCACCATTGCTGACAACAACTTGACAGAGAGTCTTCCCCTCGAGATCGCCAACCTGACTTCTTTAAAGCTCTTGAACATCTCCAACAACTTGTTCAGTGGAAGATTTCCCGGAGAAGTCACGCTCAGAATGACAGAGCTTGAGGTTGTTGACGCCTATAATAACAACCTCAATGGCCCACTTCCTGTTGAGCTCGTCAAACTCAAAAGGCTCAAATATCTACATCTTGGCGGGAACTACTTCGCCGGAGAAATTCCCAAAAATTATTCAAAGATTCAAAGCTTAGAATATTTGGGCCTCAACGGTAACTCGCTTGGTGGAAAGTTTCCGGCCAGCTTGGCTAGGTTGAAGAATCTCAAGGAATTGTACGTCGGGTACTATAACAATTTTGACGGTGGAATTCCACCTGAGTTGGGAATGTTGAAGGCCTTGCAAGTTCTTGACATGGCCTGGTGTAACCTCTCCGACAAGATTCCGACGACTCTGGGCTTTTTGAAGAATTTACGGGGGTTGTTTTTACAGGGTAACCATTTCAGTGGTAATATACCTCCAGAGCTTTCAGGAATGACAAGCCTCATGAGTTTGGATCTCTCGATTAACGAGTTCACCGGAGAAATACCAGAAAGTTTCTCAGAGCTGAAGAACCTTAGCCTTCTCAACCTGCATAAGAACAATCTTTACGGCCCCATACCCAACTTCATCGGCGATCTTCCTCATCTGGAGGTGCTTCGAGTTTGGGAGAACCACTTTACATTTGAACTACCTGAGAGACTTGGCCGAAATGGAAGGCTCAGAGACCTCGATGTAACTGGAAACCACCTAACCGGCCTGATTCCTCGGGATTTATGCATAGGAGGGAGGTTAAAGACGTTGGTTCTGATGGAGAATTACTTCTTTGGGCCGATTCCGGAGGAATTGGGCCTGTGCAAGTCGCTATCCCACAAGTTCCAACAAAACACACTCAACGGGACTATTCCTGCTGGAATCTTCAGCTTACCTGATGTAATCATCATTGAGCTCATCGATAACTACTTGTCTGGAGAGCTTCCGTTGCAGATGTCTGCGCCCTCACTCAGAATCCTAGCTCTTTCTAGGAATCAAATTTTTGGAAGAATCCCATCCAGCATTGGAATTCTCCGGAATTTACAAATTCTTTTGCTAGATATGAACAGATTCTCCGGGGAAGTACCAGAGGAAATCTTTAGTTTACAATTTCTAAGGAAACTCAACATCAGCACCAACAATTTTGGTGCTGAAATTCCGGCTTCTATCTCTGGTTGTTCCTCGCTAACGTCCCTAGATTTTAGTCAAAACACTTTAGATGGGGAAATCCCAAGAGGGATAGGCAAACTGAATGCAATTGAGTTTCTTAATTTCTCAAGGAACAAGCTAACAGGTCCAATTCCTGTGGAATTCAAATACATGGCGAGCCTCACAACTTTGGATCTCTCCTATAACAATTTCATTGGTAGGATCCCGACTGGGGGTCATTTTTTATGGGTCATCTCTTCTTTTGAAGGAAATACCAATCTGTGTTCGCCGAGAAACCACAAAGTGATCATCGTAGGATTAGCTGCAGTTATGCTAACTTTGCTACTCATACTGCTACTTATGTATGTACTTATCAGGGTTTATAGGAAGAGAAAGACTAGGAAATTTGAGAAATGTGGCTCTTGGAAGCTCACAATTTTTCAAGCACAGGTCGATCTCAACGCAGAGGCCCTTCTCCAGTGTCTAAACGCTCAGAACATCATCGGCAGGGGCGGAGCTGGGATTGTCTATCGCGGGAAAATGCTACACGGTGATGATATTGCAATCAAACGGTTGCAGAGGGATCAGGGATTTTCGGCTGAAATTAAAACATTGGGACAAATCAAGCACCGGAATATAGTGAGACTGTTAGGGTACATGTCGAACAAGGACACTAATTTGTTGTTGTACGAGTACATGACTAATGGTAGCTTGGGACAACTGTTGCATGGGTCTAATGGAGGGCATTTGGAGTGGGAAATGAGATACAAGATTGCCGTGGAAGCAGCAAAGGGATTGTGTTATCTCCACCATGATTGCTCGCCTCTGATTATACACAGGGATGTCAAGTCCTATAACATCTTGCTGGACTCTAATTTTGAAGCTCATATAGCTGATTTCGGGCTTGCCAAATACTTTCAAGGACCGACAGATTGCATGTCTTCTTTTGCTGGTACCTTTGGTTACATTGCCCCAGAGTACGGTCACACAATGAAAGTGGATGAGAAAATCGATGTGTACAGCTTTGGTGTGGTTTTGCTGGAACTAGTAACAGGGAGGAAACCAGTAGTTGAACTGGTCGAAGAAGCTGTGAATATAGTCAGTTGGGTAAGGAAAACCACATCACAAATTCCTCAGTCATCCGCTGCATCATCTGTACAGTCAATTGTGGACTCCAGGCTCAGAGGATTCCCATTGGCTGGTGTCGAGCACGTGTTCAAAATAGCAATGATGTGTGTTGAGAATCACAGCTCTGCACGACCTACAATGAGGGAAGTCGTCTACTTGCTCACTAATCCTCCTCCTTCTGCTCCAGGCATGACCAACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

959

Amino Acids

106.63

Weight (kDa)

7.8

Isoelectric Point (pI)

34.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 68	2.4e-06	Leucine rich repeat N-terminal domain
LRR_14	PF23598	164 - 273	3.1e-11	Leucine-rich repeat region
LRR_14	PF23598	236 - 370	8.2e-11	Leucine-rich repeat region
LRR_14	PF23598	453 - 583	6.3e-10	Leucine-rich repeat region
PK_Tyr_Ser-Thr	PF07714	679 - 943	2e-39	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	681 - 943	3.3e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	966
Acc65I	GGTACC	1 cut(s)	2501
AccB1I	GGYRCC	1 cut(s)	2501
AccB7I	CCANNNNNTGG	1 cut(s)	2747
AccI	GTMKAC	1 cut(s)	2829
AccII	CGCG	1 cut(s)	2082
AccIII	TCCGGA	2 cut(s)	1204, 1434
AciI	CCGC	4 cut(s)	528, 2061, 2082, 2691
AclWI	GGATC	5 cut(s)	891, 1749, 1765, 1778, 2139
AcoI	YGGCCR	2 cut(s)	627, 1072
AcuI	CTGAAG	2 cut(s)	956, 1270
AcvI	CACGTG	1 cut(s)	2761
AcyI	GRCGYC	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	1852
AfiI	CCNNNNNNNGG	6 cut(s)	251, 710, 1780, 1781, 2528, 2747
AflIII	ACRYGT	3 cut(s)	231, 2205, 2760
AhdI	GACNNNNNGTC	2 cut(s)	327, 1782
AhlI	ACTAGT	1 cut(s)	2593
AjnI	CCWGG	3 cut(s)	746, 2723, 2860
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AloI	GAACNNNNNNTCC	2 cut(s)	1457, 1489
Alw21I	GWGCWC	3 cut(s)	492, 1317, 2760
Alw26I	GTCTC	3 cut(s)	1060, 1086, 2185
AlwI	GGATC	5 cut(s)	891, 1749, 1765, 1778, 2139
Ama87I	CYCGRG	2 cut(s)	338, 1134
Aor13HI	TCCGGA	2 cut(s)	1204, 1434
ApeKI	GCWGC	3 cut(s)	1871, 2333, 2693
ArsI	GACNNNNNNTTYG	2 cut(s)	2408, 2440
Asp700I	GAANNNNTTC	3 cut(s)	536, 1187, 1469
Asp718I	GGTACC	1 cut(s)	2501
AspLEI	GCGC	1 cut(s)	1363
AspS9I	GGNCC	8 cut(s)	473, 592, 980, 1196, 1216, 1694, 2017, 2471
AsuC2I	CCSGG	2 cut(s)	408, 1477
AsuHPI	GGTGA	3 cut(s)	292, 895, 2111
AvaI	CYCGRG	2 cut(s)	338, 1134
AvaII	GGWCC	2 cut(s)	1694, 2471
BamHI	GGATCC	1 cut(s)	1770
BanI	GGYRCC	1 cut(s)	2501
BanII	GRGCYC	3 cut(s)	162, 492, 1317
BauI	CACGAG	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	2761
BbsI	GAAGAC	2 cut(s)	323, 2481
Bbv12I	GWGCWC	3 cut(s)	492, 1317, 2760
BbvI	GCAGC	3 cut(s)	1858, 2345, 2680
BccI	CCATC	3 cut(s)	1171, 1423, 1613
BceAI	ACGGC	2 cut(s)	994, 2309
BciT130I	CCWGG	3 cut(s)	748, 2725, 2862
BclI	TGATCA	1 cut(s)	1854
BcnI	CCSGG	2 cut(s)	408, 1477
BcoDI	GTCTC	3 cut(s)	1060, 1086, 2185
BcuI	ACTAGT	1 cut(s)	2593
BfaI	CTAG	8 cut(s)	146, 639, 1379, 1389, 1457, 1595, 1947, 2594
BfmI	CTRYAG	1 cut(s)	1872
BfuAI	ACCTGC	1 cut(s)	966
BglI	GCCNNNNNGGC	1 cut(s)	635
BisI	GCNGC	3 cut(s)	1872, 2334, 2694
BlsI	GCNGC	3 cut(s)	1873, 2335, 2695
Bme1390I	CCNGG	5 cut(s)	408, 748, 1477, 2725, 2862
Bme18I	GGWCC	2 cut(s)	1694, 2471
BmeRI	GACNNNNNGTC	2 cut(s)	327, 1782
BmeT110I	CYCGRG	2 cut(s)	338, 1134
BmgT120I	GGNCC	8 cut(s)	473, 592, 980, 1196, 1216, 1694, 2017, 2471
BmiI	GGNNCC	4 cut(s)	159, 982, 1772, 2503
BmrFI	CCNGG	5 cut(s)	408, 748, 1477, 2725, 2862
BmrI	ACTGGG	2 cut(s)	163, 1788
BmsI	GCATC	3 cut(s)	85, 96, 2705
BmuI	ACTGGG	2 cut(s)	163, 1788
BpiI	GAAGAC	2 cut(s)	323, 2481
BpmI	CTGGAG	7 cut(s)	210, 831, 1037, 1356, 2009, 2707, 2844
Bpu10I	CCTNAGC	1 cut(s)	944
BpuEI	CTTGAG	4 cut(s)	95, 458, 638, 1660
BpuMI	CCSGG	2 cut(s)	408, 1477
Bsa29I	ATCGAT	2 cut(s)	1320, 2559
BsaAI	YACGTR	1 cut(s)	2761
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	1086
BsaJI	CCNNGG	3 cut(s)	1133, 1476, 2325
BsaWI	WCCGGW	4 cut(s)	905, 1204, 1434, 2178
BsaXI	ACNNNNNCTCC	4 cut(s)	1457, 1487, 2830, 2860
Bsc4I	CCNNNNNNNGG	6 cut(s)	251, 710, 1780, 1781, 2528, 2747
Bse118I	RCCGGY	1 cut(s)	1121
Bse1I	ACTGG	7 cut(s)	158, 237, 1111, 1783, 2026, 2612, 2628
Bse3DI	GCAATG	3 cut(s)	303, 2514, 2781
BseAI	TCCGGA	2 cut(s)	1204, 1434
BseBI	CCWGG	3 cut(s)	748, 2725, 2862
BseCI	ATCGAT	2 cut(s)	1320, 2559
BseDI	CCNNGG	3 cut(s)	1133, 1476, 2325
BseGI	GGATG	4 cut(s)	1415, 2395, 2554, 2687
BseLI	CCNNNNNNNGG	6 cut(s)	251, 710, 1780, 1781, 2528, 2747
BseMI	GCAATG	3 cut(s)	303, 2514, 2781
BseMII	CTCAG	9 cut(s)	436, 696, 942, 1053, 1102, 1384, 2054, 2696, 2743
BseNI	ACTGG	7 cut(s)	158, 237, 1111, 1783, 2026, 2612, 2628
BseRI	GAGGAG	1 cut(s)	2838
BseXI	GCAGC	3 cut(s)	1858, 2345, 2680
BseYI	CCCAGC	1 cut(s)	2066
BsgI	GTGCAG	1 cut(s)	2787
Bsh1236I	CGCG	1 cut(s)	2082
BshNI	GGYRCC	1 cut(s)	2501
BshVI	ATCGAT	2 cut(s)	1320, 2559
BsiHKAI	GWGCWC	3 cut(s)	492, 1317, 2760
BsiHKCI	CYCGRG	2 cut(s)	338, 1134
BslFI	GGGAC	4 cut(s)	1279, 1576, 2178, 2277
BslI	CCNNNNNNNGG	6 cut(s)	251, 710, 1780, 1781, 2528, 2747
BsmAI	GTCTC	3 cut(s)	1060, 1086, 2185
BsmFI	GGGAC	4 cut(s)	1279, 1576, 2178, 2277
BsmI	GAATGC	1 cut(s)	1657
Bso31I	GGTCTC	1 cut(s)	1086
BsoBI	CYCGRG	2 cut(s)	338, 1134
Bsp1286I	GDGCHC	4 cut(s)	162, 492, 1317, 2760
Bsp13I	TCCGGA	2 cut(s)	1204, 1434
Bsp1407I	TGTACA	2 cut(s)	2565, 2704
Bsp143I	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
BspACI	CCGC	4 cut(s)	528, 2061, 2082, 2691
BspCNI	CTCAG	9 cut(s)	435, 697, 941, 1054, 1101, 1383, 2053, 2695, 2742
BspDI	ATCGAT	2 cut(s)	1320, 2559
BspEI	TCCGGA	2 cut(s)	1204, 1434
BspFNI	CGCG	1 cut(s)	2082
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	4 cut(s)	159, 982, 1772, 2503
BspMAI	CTGCAG	1 cut(s)	1876
BspMI	ACCTGC	1 cut(s)	966
BspPI	GGATC	5 cut(s)	891, 1749, 1765, 1778, 2139
BspT107I	GGYRCC	1 cut(s)	2501
BspTNI	GGTCTC	1 cut(s)	1086
BsrDI	GCAATG	3 cut(s)	303, 2514, 2781
BsrFI	RCCGGY	1 cut(s)	1121
BsrGI	TGTACA	2 cut(s)	2565, 2704
BsrI	ACTGG	7 cut(s)	158, 237, 1111, 1783, 2026, 2612, 2628
BssAI	RCCGGY	1 cut(s)	1121
BssECI	CCNNGG	3 cut(s)	1133, 1476, 2325
BssMI	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	3 cut(s)	748, 2725, 2862
Bst6I	CTCTTC	3 cut(s)	169, 1810, 1931
BstACI	GRCGYC	1 cut(s)	450
BstAUI	TGTACA	2 cut(s)	2565, 2704
BstBAI	YACGTR	1 cut(s)	2761
BstC8I	GCNNGC	4 cut(s)	631, 1726, 2369, 2454
BstDSI	CCRYGG	1 cut(s)	2325
BstEII	GGTNACC	1 cut(s)	821
BstF5I	GGATG	4 cut(s)	1415, 2395, 2554, 2687
BstFNI	CGCG	1 cut(s)	2082
BstHHI	GCGC	1 cut(s)	1363
BstKTI	GATC	8 cut(s)	345, 886, 1006, 1744, 1773, 1857, 2005, 2134
BstMAI	GTCTC	3 cut(s)	1060, 1086, 2185
BstMBI	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
BstMWI	GCNNNNNNNGC	5 cut(s)	635, 1348, 1888, 2330, 2438
BstNI	CCWGG	3 cut(s)	748, 2725, 2862
BstNSI	RCATGY	2 cut(s)	2209, 2488
BstPI	GGTNACC	1 cut(s)	821
BstSCI	CCNGG	5 cut(s)	406, 746, 1475, 2723, 2860
BstSFI	CTRYAG	1 cut(s)	1872
BstUI	CGCG	1 cut(s)	2082
BstV1I	GCAGC	3 cut(s)	1858, 2345, 2680
BstV2I	GAAGAC	2 cut(s)	323, 2481
BstX2I	RGATCY	3 cut(s)	883, 1741, 1770
BstXI	CCANNNNNNTGG	1 cut(s)	833
BstYI	RGATCY	3 cut(s)	883, 1741, 1770
Bsu15I	ATCGAT	2 cut(s)	1320, 2559
BsuTUI	ATCGAT	2 cut(s)	1320, 2559
BtgI	CCRYGG	1 cut(s)	2325
BtsCI	GGATG	4 cut(s)	1415, 2395, 2554, 2687
BtsIMutI	CAGTG	4 cut(s)	98, 400, 838, 2033
BveI	ACCTGC	1 cut(s)	966
Cac8I	GCNNGC	4 cut(s)	631, 1726, 2369, 2454
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	1363
Cfr10I	RCCGGY	1 cut(s)	1121
Cfr13I	GGNCC	8 cut(s)	473, 592, 980, 1196, 1216, 1694, 2017, 2471
ClaI	ATCGAT	2 cut(s)	1320, 2559
CseI	GACGC	1 cut(s)	458
CspCI	CAANNNNNGTGG	8 cut(s)	690, 725, 1686, 1721, 2345, 2380, 2526, 2561
DpnI	GATC	8 cut(s)	344, 885, 1005, 1743, 1772, 1856, 2004, 2133
DpnII	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	1852
DriI	GACNNNNNGTC	2 cut(s)	327, 1782
EaeI	YGGCCR	2 cut(s)	627, 1072
Eam1104I	CTCTTC	3 cut(s)	169, 1810, 1931
Eam1105I	GACNNNNNGTC	2 cut(s)	327, 1782
EarI	CTCTTC	3 cut(s)	169, 1810, 1931
EciI	GGCGGA	1 cut(s)	2076
Ecl136II	GAGCTC	2 cut(s)	490, 1315
Eco147I	AGGCCT	1 cut(s)	725
Eco24I	GRGCYC	3 cut(s)	162, 492, 1317
Eco31I	GGTCTC	1 cut(s)	1086
Eco47I	GGWCC	2 cut(s)	1694, 2471
Eco53kI	GAGCTC	2 cut(s)	490, 1315
Eco57I	CTGAAG	2 cut(s)	956, 1270
Eco72I	CACGTG	1 cut(s)	2761
Eco88I	CYCGRG	2 cut(s)	338, 1134
Eco91I	GGTNACC	1 cut(s)	821
EcoICRI	GAGCTC	2 cut(s)	490, 1315
EcoO109I	RGGNCCY	1 cut(s)	2017
EcoO65I	GGTNACC	1 cut(s)	821
EcoRI	GAATTC	3 cut(s)	696, 1428, 1709
EcoRII	CCWGG	3 cut(s)	746, 2723, 2860
EcoT22I	ATGCAT	1 cut(s)	1148
EcoT38I	GRGCYC	3 cut(s)	162, 492, 1317
FaqI	GGGAC	4 cut(s)	1279, 1576, 2178, 2277
FauI	CCCGC	2 cut(s)	521, 2075
FbaI	TGATCA	1 cut(s)	1854
FblI	GTMKAC	1 cut(s)	2829
Fnu4HI	GCNGC	3 cut(s)	1872, 2334, 2694
FokI	GGATG	4 cut(s)	1402, 2402, 2561, 2674
FriOI	GRGCYC	3 cut(s)	162, 492, 1317
Fsp4HI	GCNGC	3 cut(s)	1872, 2334, 2694
FspBI	CTAG	8 cut(s)	146, 639, 1379, 1389, 1457, 1595, 1947, 2594
GlaI	GCGC	1 cut(s)	1362
GluI	GCNGC	3 cut(s)	1872, 2334, 2694
GsaI	CCCAGC	1 cut(s)	2070
GsuI	CTGGAG	7 cut(s)	210, 831, 1037, 1356, 2009, 2707, 2844
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	1363
Hin1I	GRCGYC	1 cut(s)	450
Hin6I	GCGC	1 cut(s)	1361
HinP1I	GCGC	1 cut(s)	1361
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	577
HphI	GGTGA	3 cut(s)	292, 895, 2111
Hpy166II	GTNNAC	6 cut(s)	448, 903, 1505, 2566, 2719, 2830
Hpy8I	GTNNAC	6 cut(s)	448, 903, 1505, 2566, 2719, 2830
Hpy99I	CGWCG	2 cut(s)	671, 778
HpyAV	CCTTC	6 cut(s)	715, 959, 1077, 1808, 2030, 2862
HpyCH4IV	ACGT	5 cut(s)	231, 666, 1166, 1589, 2760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	635, 1348, 1888, 2330, 2438
HpySE526I	ACGT	5 cut(s)	231, 666, 1166, 1589, 2760
Hsp92I	GRCGYC	1 cut(s)	450
HspAI	GCGC	1 cut(s)	1361
Kpn2I	TCCGGA	2 cut(s)	1204, 1434
KpnI	GGTACC	1 cut(s)	2505
Ksp22I	TGATCA	1 cut(s)	1854
Kzo9I	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
LmnI	GCTCC	3 cut(s)	157, 2063, 2863
Lsp1109I	GCAGC	3 cut(s)	1858, 2345, 2680
LweI	GCATC	3 cut(s)	85, 96, 2705
MaeI	CTAG	8 cut(s)	146, 639, 1379, 1389, 1457, 1595, 1947, 2594
MaeII	ACGT	5 cut(s)	231, 666, 1166, 1589, 2760
MaeIII	GTNAC	9 cut(s)	200, 415, 602, 752, 821, 1102, 2510, 2531, 2596
MalI	GATC	8 cut(s)	344, 885, 1005, 1743, 1772, 1856, 2004, 2133
MboI	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
MfeI	CAATTG	2 cut(s)	1656, 2712
MflI	RGATCY	3 cut(s)	883, 1741, 1770
MhlI	GDGCHC	4 cut(s)	162, 492, 1317, 2760
MlyI	GAGTC	4 cut(s)	337, 772, 2411, 2714
MmeI	TCCRAC	4 cut(s)	405, 786, 797, 1270
Mph1103I	ATGCAT	1 cut(s)	1148
MroI	TCCGGA	2 cut(s)	1204, 1434
MroXI	GAANNNNTTC	3 cut(s)	536, 1187, 1469
MseI	TTAA	6 cut(s)	228, 362, 894, 1160, 1668, 2154
MslI	CAYNNNNRTG	3 cut(s)	831, 2100, 2388
MspA1I	CMGCKG	1 cut(s)	2693
MspR9I	CCNGG	5 cut(s)	408, 748, 1477, 2725, 2862
MunI	CAATTG	2 cut(s)	1656, 2712
Mva1269I	GAATGC	1 cut(s)	1657
MvaI	CCWGG	3 cut(s)	748, 2725, 2862
MvnI	CGCG	1 cut(s)	2082
MwoI	GCNNNNNNNGC	5 cut(s)	635, 1348, 1888, 2330, 2438
NciI	CCSGG	2 cut(s)	408, 1477
NdeII	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
NlaIV	GGNNCC	4 cut(s)	159, 982, 1772, 2503
NmeAIII	GCCGAG	1 cut(s)	1863
NmuCI	GTSAC	3 cut(s)	200, 415, 2531
NsiI	ATGCAT	1 cut(s)	1148
NspI	RCATGY	2 cut(s)	2209, 2488
PaeR7I	CTCGAG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	873
PceI	AGGCCT	1 cut(s)	725
PciI	ACATGT	1 cut(s)	2205
PctI	GAATGC	1 cut(s)	1657
PdmI	GAANNNNTTC	3 cut(s)	536, 1187, 1469
PflMI	CCANNNNNTGG	1 cut(s)	2747
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	1873, 2335, 2695
PleI	GAGTC	4 cut(s)	336, 772, 2411, 2714
PmaCI	CACGTG	1 cut(s)	2761
PmlI	CACGTG	1 cut(s)	2761
PpsI	GAGTC	4 cut(s)	336, 772, 2411, 2714
Ppu21I	YACGTR	1 cut(s)	2761
PscI	ACATGT	1 cut(s)	2205
Psp124BI	GAGCTC	2 cut(s)	492, 1317
Psp6I	CCWGG	3 cut(s)	746, 2723, 2860
PspCI	CACGTG	1 cut(s)	2761
PspEI	GGTNACC	1 cut(s)	821
PspFI	CCCAGC	1 cut(s)	2066
PspGI	CCWGG	3 cut(s)	746, 2723, 2860
PspN4I	GGNNCC	4 cut(s)	159, 982, 1772, 2503
PspPI	GGNCC	8 cut(s)	473, 592, 980, 1196, 1216, 1694, 2017, 2471
PsrI	GAACNNNNNNTAC	2 cut(s)	959, 991
PstI	CTGCAG	1 cut(s)	1876
PsuI	RGATCY	3 cut(s)	883, 1741, 1770
RseI	CAYNNNNRTG	3 cut(s)	831, 2100, 2388
SacI	GAGCTC	2 cut(s)	492, 1317
SaqAI	TTAA	6 cut(s)	228, 362, 894, 1160, 1668, 2154
SatI	GCNGC	3 cut(s)	1872, 2334, 2694
Sau3AI	GATC	8 cut(s)	342, 883, 1003, 1741, 1770, 1854, 2002, 2131
Sau96I	GGNCC	8 cut(s)	473, 592, 980, 1196, 1216, 1694, 2017, 2471
SchI	GAGTC	4 cut(s)	337, 772, 2411, 2714
ScrFI	CCNGG	5 cut(s)	408, 748, 1477, 2725, 2862
SduI	GDGCHC	4 cut(s)	162, 492, 1317, 2760
SfaNI	GCATC	3 cut(s)	85, 96, 2705
SfcI	CTRYAG	1 cut(s)	1872
Sfr274I	CTCGAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	1694, 2471
SlaI	CTCGAG	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	831, 2100, 2388
SmlI	CTYRAG	5 cut(s)	110, 338, 437, 653, 1675
SmoI	CTYRAG	5 cut(s)	110, 338, 437, 653, 1675
SpeI	ACTAGT	1 cut(s)	2593
SseBI	AGGCCT	1 cut(s)	725
SsiI	CCGC	4 cut(s)	528, 2061, 2082, 2691
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	8 cut(s)	146, 639, 1379, 1389, 1457, 1595, 1947, 2594
SstI	GAGCTC	2 cut(s)	492, 1317
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	5 cut(s)	406, 746, 1475, 2723, 2860
TaiI	ACGT	5 cut(s)	234, 669, 1169, 1592, 2763
TaqII	GACCGA	1 cut(s)	2488
TatI	WGTACW	4 cut(s)	1915, 2241, 2565, 2704
Tru1I	TTAA	6 cut(s)	228, 362, 894, 1160, 1668, 2154
Tru9I	TTAA	6 cut(s)	228, 362, 894, 1160, 1668, 2154
TscAI	CASTG	4 cut(s)	105, 400, 838, 2033
TseFI	GTSAC	3 cut(s)	200, 415, 2531
TseI	GCWGC	3 cut(s)	1871, 2333, 2693
Tsp45I	GTSAC	3 cut(s)	200, 415, 2531
TspDTI	ATGAA	6 cut(s)	37, 186, 985, 1478, 1750, 2555
TspGWI	ACGGA	1 cut(s)	1335
TspRI	CASTG	4 cut(s)	105, 400, 838, 2033
Van91I	CCANNNNNTGG	1 cut(s)	2747
VpaK11BI	GGWCC	2 cut(s)	1694, 2471
XceI	RCATGY	2 cut(s)	2209, 2488
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	2829
XmnI	GAANNNNTTC	3 cut(s)	536, 1187, 1469
XspI	CTAG	8 cut(s)	146, 639, 1379, 1389, 1457, 1595, 1947, 2594
Zsp2I	ATGCAT	1 cut(s)	1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.