Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025689.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1078

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgattggccccaaaggttcagggctagagaactgggacccctcttctcattactactgctccttctctggagtttcatgtgaccaccaatcacgagttgttgctctcaacgtgtccggtttgcctctgtttgggtcgattccagcagagattgggcttctaaacaaactcgtcaacctcaccattgccgacaacaacttcacagggaagcttcccctcgagatggccaacctgacttgtttaaagctcttgaacatctccaacaacttgttcgttggaaaatttcccggagaaatgacgctcagaatgacagagcttgaggttcttgacgcctataataacaactataatggcccacttccggtagagctcgtcaatctcaaaaagctcaaatatctgcatcttggcgggaactacttcactggagaaattccgaatagttattcagagattcaaaacttggagtatctgggcctcaacggtatcgggctcaacggaatgttcccttccagcttggctcggctaaagaatctgaaagaattgtacgttggttactacaatacttatagtggtggaattccacctgagttgggaaggatggagtcgttgcaagtgcttgacatggccagctccaacctcaccggcacgattccggtcagtctaggctttttgaagaacttacgccggttgtatctacagacgaactgtttcagtggttatatacctccgcaactttcaggtatggtgagtctgagggctttggatctctctgttaacgaactcaccggagaaataccagaaagtctctcagagctcaagaacctcaccctactcaacctgcataagaacaatttttacggcccgatacccaacttcatcggcgatcttcctcatctggaggtgcttcaactttgggagaacaactttacatatgaactacctgagagtcttggccggaatggaacgctcacaaacctcgatgtaaccggtaaccacttcaccgggttgattcctcgagatttgtgcaaaggaggaaggttgaggacgttggttctgatggataatcacttctttggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

39.71

Weight (kDa)

5.68

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	846
AciI	CCGC	2 cut(s)	408, 728
AclWI	GGATC	1 cut(s)	771
AcoI	YGGCCR	3 cut(s)	225, 624, 952
AcsI	RAATTY	3 cut(s)	281, 429, 576
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	4 cut(s)	131, 223, 361, 590
AflIII	ACRYGT	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	986
AgsI	TTSAA	4 cut(s)	253, 455, 673, 908
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 531, 563
AluBI	AGCT	8 cut(s)	211, 247, 316, 370, 388, 513, 630, 814
AluI	AGCT	8 cut(s)	211, 247, 316, 370, 388, 513, 630, 814
Alw21I	GWGCWC	2 cut(s)	372, 816
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	771
Ama87I	CYCGRG	2 cut(s)	218, 1014
AoxI	GGCC	7 cut(s)	7, 225, 352, 472, 624, 859, 952
ApoI	RAATTY	3 cut(s)	281, 429, 576
AsiGI	ACCGGT	1 cut(s)	986
Asp700I	GAANNNNTTC	2 cut(s)	416, 707
AspS9I	GGNCC	5 cut(s)	8, 37, 353, 472, 860
AsuC2I	CCSGG	2 cut(s)	288, 1003
AsuHPI	GGTGA	6 cut(s)	172, 631, 757, 775, 817, 991
AvaI	CYCGRG	2 cut(s)	218, 1014
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	2 cut(s)	227, 626
BanII	GRGCYC	3 cut(s)	372, 492, 816
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	2 cut(s)	372, 816
BccI	CCATC	3 cut(s)	217, 592, 1051
BceAI	ACGGC	1 cut(s)	874
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BcnI	CCSGG	2 cut(s)	288, 1003
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	2 cut(s)	26, 662
BfmI	CTRYAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	846
Bme1390I	CCNGG	2 cut(s)	288, 1003
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	218, 1014
BmgT120I	GGNCC	5 cut(s)	8, 37, 353, 472, 860
BmiI	GGNNCC	3 cut(s)	10, 38, 39
BmrFI	CCNGG	2 cut(s)	288, 1003
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	43
BpmI	CTGGAG	3 cut(s)	90, 444, 917
BpuEI	CTTGAG	2 cut(s)	338, 800
BpuMI	CCSGG	2 cut(s)	288, 1003
BsaHI	GRCGYC	1 cut(s)	330
BsaWI	WCCGGW	5 cut(s)	116, 361, 652, 785, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 223, 361, 590
Bse118I	RCCGGY	3 cut(s)	641, 684, 986
Bse1I	ACTGG	2 cut(s)	38, 427
Bse3DI	GCAATG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	4 cut(s)	131, 223, 361, 590
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	5 cut(s)	316, 576, 743, 822, 933
BseNI	ACTGG	2 cut(s)	38, 427
BshFI	GGCC	7 cut(s)	9, 227, 354, 474, 626, 861, 954
BshTI	ACCGGT	1 cut(s)	986
BsiHKAI	GWGCWC	2 cut(s)	372, 816
BsiHKCI	CYCGRG	2 cut(s)	218, 1014
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	4 cut(s)	131, 223, 361, 590
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	7 cut(s)	9, 227, 354, 474, 626, 861, 954
BsoBI	CYCGRG	2 cut(s)	218, 1014
Bsp1286I	GDGCHC	3 cut(s)	372, 492, 816
Bsp143I	GATC	2 cut(s)	763, 883
BspACI	CCGC	2 cut(s)	408, 728
BspANI	GGCC	7 cut(s)	9, 227, 354, 474, 626, 861, 954
BspCNI	CTCAG	5 cut(s)	315, 577, 744, 821, 934
BspLI	GGNNCC	3 cut(s)	10, 38, 39
BspMI	ACCTGC	1 cut(s)	846
BspPI	GGATC	1 cut(s)	771
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	3 cut(s)	641, 684, 986
BsrI	ACTGG	2 cut(s)	38, 427
BssAI	RCCGGY	3 cut(s)	641, 684, 986
BssMI	GATC	2 cut(s)	763, 883
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	482, 707
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	5 cut(s)	302, 585, 752, 808, 942
BstEII	GGTNACC	1 cut(s)	989
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	2 cut(s)	766, 886
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	2 cut(s)	763, 883
BstPI	GGTNACC	1 cut(s)	989
BstSCI	CCNGG	2 cut(s)	286, 1001
BstSFI	CTRYAG	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
BsuRI	GGCC	7 cut(s)	9, 227, 354, 474, 626, 861, 954
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	420, 718
BveI	ACCTGC	1 cut(s)	846
Cac8I	GCNNGC	1 cut(s)	628
Cfr10I	RCCGGY	3 cut(s)	641, 684, 986
Cfr13I	GGNCC	5 cut(s)	8, 37, 353, 472, 860
CseI	GACGC	2 cut(s)	307, 338
Csp6I	GTAC	1 cut(s)	544
CspAI	ACCGGT	1 cut(s)	986
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	2 cut(s)	78, 622
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	5 cut(s)	302, 585, 752, 808, 942
DpnI	GATC	2 cut(s)	765, 885
DpnII	GATC	2 cut(s)	763, 883
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	3 cut(s)	225, 624, 952
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	2 cut(s)	370, 814
Eco24I	GRGCYC	3 cut(s)	372, 492, 816
Eco47I	GGWCC	1 cut(s)	37
Eco53kI	GAGCTC	2 cut(s)	370, 814
Eco88I	CYCGRG	2 cut(s)	218, 1014
Eco91I	GGTNACC	1 cut(s)	989
EcoICRI	GAGCTC	2 cut(s)	370, 814
EcoO109I	RGGNCCY	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	989
EcoRI	GAATTC	1 cut(s)	576
EcoT38I	GRGCYC	3 cut(s)	372, 492, 816
FaeI	CATG	2 cut(s)	81, 625
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	77, 621
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	1 cut(s)	931
FokI	GGATG	1 cut(s)	610
FriOI	GRGCYC	3 cut(s)	372, 492, 816
FspBI	CTAG	2 cut(s)	26, 662
GsuI	CTGGAG	3 cut(s)	90, 444, 917
HaeIII	GGCC	7 cut(s)	9, 227, 354, 474, 626, 861, 954
HgaI	GACGC	2 cut(s)	307, 338
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	81, 625
HincII	GTYRAC	2 cut(s)	175, 775
HindII	GTYRAC	2 cut(s)	175, 775
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	8 cut(s)	139, 451, 529, 602, 649, 748, 946, 1009
HpaI	GTTAAC	1 cut(s)	775
HphI	GGTGA	6 cut(s)	172, 631, 757, 775, 817, 991
Hpy166II	GTNNAC	2 cut(s)	175, 775
Hpy188I	TCNGA	7 cut(s)	305, 435, 448, 534, 753, 811, 1056
Hpy188III	TCNNGA	8 cut(s)	69, 93, 220, 250, 326, 817, 896, 1016
Hpy8I	GTNNAC	2 cut(s)	175, 775
HpyAV	CCTTC	4 cut(s)	73, 516, 588, 1029
HpyCH4III	ACNGT	2 cut(s)	482, 707
HpyCH4IV	ACGT	3 cut(s)	111, 546, 1046
HpyCH4V	TGCA	4 cut(s)	400, 610, 841, 1026
HpyF3I	CTNAG	5 cut(s)	302, 585, 752, 808, 942
HpySE526I	ACGT	3 cut(s)	111, 546, 1046
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	81, 625
KflI	GGGWCCC	1 cut(s)	37
KspAI	GTTAAC	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	763, 883
LmnI	GCTCC	2 cut(s)	65, 635
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	2 cut(s)	26, 662
MaeII	ACGT	3 cut(s)	111, 546, 1046
MaeIII	GTNAC	4 cut(s)	80, 551, 982, 989
MalI	GATC	2 cut(s)	765, 885
MboI	GATC	2 cut(s)	763, 883
MboII	GAAGA	3 cut(s)	36, 685, 878
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	3 cut(s)	372, 492, 816
MlsI	TGGCCA	2 cut(s)	227, 626
MluCI	AATT	5 cut(s)	281, 429, 539, 576, 850
MluNI	TGGCCA	2 cut(s)	227, 626
MlyI	GAGTC	3 cut(s)	611, 757, 955
MmeI	TCCRAC	3 cut(s)	256, 285, 657
Mox20I	TGGCCA	2 cut(s)	227, 626
MroXI	GAANNNNTTC	2 cut(s)	416, 707
MscI	TGGCCA	2 cut(s)	227, 626
MseI	TTAA	2 cut(s)	242, 774
Msp20I	TGGCCA	2 cut(s)	227, 626
MspR9I	CCNGG	2 cut(s)	288, 1003
NciI	CCSGG	2 cut(s)	288, 1003
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	2 cut(s)	763, 883
NlaIII	CATG	2 cut(s)	81, 625
NlaIV	GGNNCC	3 cut(s)	10, 38, 39
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	80
PaeR7I	CTCGAG	2 cut(s)	218, 1014
PdmI	GAANNNNTTC	2 cut(s)	416, 707
PfeI	GAWTC	5 cut(s)	139, 451, 529, 649, 1009
PfoI	TCCNGGA	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	986
PleI	GAGTC	3 cut(s)	610, 756, 954
PpsI	GAGTC	3 cut(s)	610, 756, 954
PpuMI	RGGWCCY	1 cut(s)	37
Psp124BI	GAGCTC	2 cut(s)	372, 816
Psp5II	RGGWCCY	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	989
PspN4I	GGNNCC	3 cut(s)	10, 38, 39
PspPI	GGNCC	5 cut(s)	8, 37, 353, 472, 860
PspPPI	RGGWCCY	1 cut(s)	37
PsrI	GAACNNNNNNTAC	2 cut(s)	839, 871
PsuI	RGATCY	1 cut(s)	763
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SacI	GAGCTC	2 cut(s)	372, 816
SaqAI	TTAA	2 cut(s)	242, 774
Sau3AI	GATC	2 cut(s)	763, 883
Sau96I	GGNCC	5 cut(s)	8, 37, 353, 472, 860
SchI	GAGTC	3 cut(s)	611, 757, 955
ScrFI	CCNGG	2 cut(s)	288, 1003
SduI	GDGCHC	3 cut(s)	372, 492, 816
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	695
Sfr274I	CTCGAG	2 cut(s)	218, 1014
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	2 cut(s)	218, 1014
SmlI	CTYRAG	4 cut(s)	218, 317, 815, 1014
SmoI	CTYRAG	4 cut(s)	218, 317, 815, 1014
Sse9I	AATT	5 cut(s)	281, 429, 539, 576, 850
SsiI	CCGC	2 cut(s)	408, 728
SspMI	CTAG	2 cut(s)	26, 662
SstI	GAGCTC	2 cut(s)	372, 816
StyD4I	CCNGG	2 cut(s)	286, 1001
TaaI	ACNGT	2 cut(s)	482, 707
TaiI	ACGT	3 cut(s)	114, 549, 1049
TaqI	TCGA	4 cut(s)	137, 219, 978, 1015
TasI	AATT	5 cut(s)	281, 429, 539, 576, 850
TfiI	GAWTC	5 cut(s)	139, 451, 529, 649, 1009
Tru1I	TTAA	2 cut(s)	242, 774
Tru9I	TTAA	2 cut(s)	242, 774
TscAI	CASTG	2 cut(s)	427, 718
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	66, 865, 948
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	2 cut(s)	427, 718
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	3 cut(s)	281, 429, 576
XhoI	CTCGAG	2 cut(s)	218, 1014
XmnI	GAANNNNTTC	2 cut(s)	416, 707
XspI	CTAG	2 cut(s)	26, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.