Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

32604152 .. 32621832

Gene Structure 17681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG284200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGATTGGTCCCAAAGGTTCAGGGCTGGAGGACTGGGAGCCCTCTTCTCACCACTACTGCTCCTTCTCTGGAGTTTCATGTGACCAGCAATCACGAGTTGTGGCTCTTAACGTGTCCAGTTTGCTTCTGTCTGGCTCGATTCCAGCAGAGATTGGGCTTCTGAACAAGCTCATCAACCTCACCATTGCTGACACCAACTTGACAGGGAGTCTTCCCCTCGAGATGGCCAACCTGACTTCATTAAAGCTTTTGAACATCTCCAACAGCGACCTCAATGGGAGTTTTCCTGGAGAAATCATACTCCGAATGACGGAGCTTGAGGTTCTCGACGCCTACAACAACGACTTTTTAGGGACTCTTCCGCTTGAGATTGCCAGTCTCAAAAAGCTCAGATATCTACATCTTGGCGATAGCTTCTTCACTGGAGAAATTCCCGGAAATTATTCAAATATTCATAGCTTAGAATATTTGGCCCTCAACGATAACTTGCTTGCCGGAAAAGTTCCGGCTAGCTTGGCTCGGTTGAAGAATCTCAAGAAACTGTACGTCGGGAATGTTAGAATCTCAATAACCTGTAACAAGTTCGACGGTGGAATTCCACCTGAGTTGGGAATGTTAGAGTCGCTGCAAGTGCTTGACATGGTCGGCTGTAAGCTCTCCGGCACGATTCCGACGACTCTGGGCTTTTTGAAGAACTTACACACGTTGCATATATCGAATAACAGTTTGAGTGTTTCGTCACAAAGAGATTCTTTCGTGCTGCTCTTAGTTGGTTTCGTTATAGAGAGAGTAAGAGAGCAGGTGAGTGAAAAAAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

273

Amino Acids

29.73

Weight (kDa)

6.08

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	124 - 255	1.6e-12	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	790
Acc36I	ACCTGC	1 cut(s)	790
AciI	CCGC	1 cut(s)	362
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	429, 594
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	3 cut(s)	223, 310, 608
AflIII	ACRYGT	2 cut(s)	111, 702
AgsI	TTSAA	4 cut(s)	253, 447, 526, 691
AhdI	GACNNNNNGTC	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	8 cut(s)	169, 247, 316, 388, 414, 459, 513, 655
AluI	AGCT	8 cut(s)	169, 247, 316, 388, 414, 459, 513, 655
Alw26I	GTCTC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	225, 471
ApeKI	GCWGC	2 cut(s)	625, 760
ApoI	RAATTY	2 cut(s)	429, 594
Asp700I	GAANNNNTTC	1 cut(s)	442
AspS9I	GGNCC	2 cut(s)	8, 472
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	3 cut(s)	41, 172, 814
AsuNHI	GCTAGC	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	612, 747
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	2 cut(s)	626, 761
BlsI	GCNGC	2 cut(s)	627, 762
Bme1390I	CCNGG	2 cut(s)	288, 435
Bme18I	GGWCC	1 cut(s)	8
BmeRI	GACNNNNNGTC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	8, 472
BmiI	GGNNCC	2 cut(s)	10, 39
BmrFI	CCNGG	2 cut(s)	288, 435
BmrI	ACTGGG	1 cut(s)	43
BmtI	GCTAGC	1 cut(s)	513
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	4 cut(s)	47, 90, 309, 444
BpuEI	CTTGAG	3 cut(s)	338, 386, 518
BpuMI	CCSGG	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 310, 608
Bse1I	ACTGG	4 cut(s)	38, 117, 375, 427
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	223, 310, 608
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	403, 594
BseNI	ACTGG	4 cut(s)	38, 117, 375, 427
BseXI	GCAGC	2 cut(s)	612, 747
BshFI	GGCC	2 cut(s)	227, 473
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	4 cut(s)	435, 495, 506, 660
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	223, 310, 608
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	227, 473
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	227, 473
BspCNI	CTCAG	2 cut(s)	402, 595
BspLI	GGNNCC	2 cut(s)	10, 39
BspMI	ACCTGC	1 cut(s)	790
BspOI	GCTAGC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	4 cut(s)	38, 117, 375, 427
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	543, 590, 725
Bst6I	CTCTTC	2 cut(s)	49, 363
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	492, 511
BstDEI	CTNAG	4 cut(s)	389, 460, 603, 766
BstMAI	GTCTC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	2 cut(s)	515, 631
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	286, 433
BstV1I	GCAGC	2 cut(s)	612, 747
BstV2I	GAAGAC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	227, 473
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	2 cut(s)	492, 511
Cfr13I	GGNCC	2 cut(s)	8, 472
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	544
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CviAII	CATG	2 cut(s)	78, 640
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	4 cut(s)	389, 460, 603, 766
DriI	GACNNNNNGTC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	49, 363
Eam1105I	GACNNNNNGTC	1 cut(s)	207
EarI	CTCTTC	2 cut(s)	49, 363
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	2 cut(s)	81, 643
FaiI	YATR	7 cut(s)	79, 299, 456, 641, 711, 713, 782
FalI	AAGNNNNNCTT	2 cut(s)	736, 768
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	77, 639
Fnu4HI	GCNGC	2 cut(s)	626, 761
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	626, 761
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	2 cut(s)	626, 761
GsuI	CTGGAG	4 cut(s)	47, 90, 309, 444
HaeIII	GGCC	2 cut(s)	227, 473
HapII	CCGG	4 cut(s)	435, 495, 506, 660
HgaI	GACGC	1 cut(s)	338
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	81, 643
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	9 cut(s)	139, 208, 355, 529, 561, 620, 667, 676, 749
HpaII	CCGG	4 cut(s)	435, 495, 506, 660
HphI	GGTGA	3 cut(s)	41, 172, 814
Hpy188I	TCNGA	4 cut(s)	162, 305, 392, 672
Hpy188III	TCNNGA	6 cut(s)	69, 93, 220, 326, 535, 550
Hpy99I	CGWCG	4 cut(s)	332, 551, 590, 676
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	543, 590, 725
HpyCH4IV	ACGT	3 cut(s)	111, 546, 704
HpyCH4V	TGCA	2 cut(s)	628, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	515, 631
HpyF3I	CTNAG	4 cut(s)	389, 460, 603, 766
HpySE526I	ACGT	3 cut(s)	111, 546, 704
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	81, 643
LmnI	GCTCC	3 cut(s)	37, 65, 313
Lsp1109I	GCAGC	2 cut(s)	612, 747
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	3 cut(s)	111, 546, 704
MaeIII	GTNAC	3 cut(s)	80, 575, 738
MboII	GAAGA	6 cut(s)	36, 203, 350, 409, 538, 703
MhlI	GDGCHC	1 cut(s)	42
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	3 cut(s)	429, 439, 594
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	4 cut(s)	217, 349, 629, 670
MmeI	TCCRAC	2 cut(s)	285, 695
MnlI	CCTC	7 cut(s)	22, 52, 188, 227, 281, 313, 485
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	2 cut(s)	108, 242
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	4 cut(s)	435, 495, 506, 660
MspR9I	CCNGG	2 cut(s)	288, 435
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	515, 631
NciI	CCSGG	1 cut(s)	435
NheI	GCTAGC	1 cut(s)	509
NlaIII	CATG	2 cut(s)	81, 643
NlaIV	GGNNCC	2 cut(s)	10, 39
NmuCI	GTSAC	2 cut(s)	80, 738
PaeR7I	CTCGAG	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	790
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	442
PfeI	GAWTC	5 cut(s)	139, 529, 561, 667, 749
PflFI	GACNNNGTC	1 cut(s)	641
PfoI	TCCNGGA	2 cut(s)	286, 433
PkrI	GCNGC	2 cut(s)	627, 762
PleI	GAGTC	4 cut(s)	216, 349, 628, 670
PpsI	GAGTC	4 cut(s)	216, 349, 628, 670
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	10, 39
PspPI	GGNCC	2 cut(s)	8, 472
PsyI	GACNNNGTC	1 cut(s)	641
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SaqAI	TTAA	2 cut(s)	108, 242
SatI	GCNGC	2 cut(s)	626, 761
Sau96I	GGNCC	2 cut(s)	8, 472
SchI	GAGTC	4 cut(s)	217, 349, 629, 670
ScrFI	CCNGG	2 cut(s)	288, 435
SduI	GDGCHC	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	4 cut(s)	218, 317, 365, 533
SmoI	CTYRAG	4 cut(s)	218, 317, 365, 533
Sse9I	AATT	3 cut(s)	429, 439, 594
SsiI	CCGC	1 cut(s)	362
SspI	AATATT	2 cut(s)	451, 467
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	286, 433
TaaI	ACNGT	3 cut(s)	543, 590, 725
TaiI	ACGT	3 cut(s)	114, 549, 707
TaqI	TCGA	5 cut(s)	137, 219, 327, 585, 716
TasI	AATT	3 cut(s)	429, 439, 594
TfiI	GAWTC	5 cut(s)	139, 529, 561, 667, 749
Tru1I	TTAA	2 cut(s)	108, 242
Tru9I	TTAA	2 cut(s)	108, 242
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	80, 738
TseI	GCWGC	2 cut(s)	625, 760
Tsp45I	GTSAC	2 cut(s)	80, 738
TspDTI	ATGAA	3 cut(s)	66, 228, 443
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	427
Tth111I	GACNNNGTC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	429, 594
XhoI	CTCGAG	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	442
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.