RLG00000018566

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000461
Physical Location & Seq
Forward (+)
32000324 .. 32000641
318 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018566

Sequence Viewer

Length: 318 bp
ATGTCGGCTGCCTCACTTGAAATCCTTACACTATCCAGGAATCAGATTTCTGGAAAAATCCCATCCACCATTGGAACCCTCACCAACTTACAACTTCTTTTGCTAGACGGGAACAGATTCTCTGGGCAGTTACCAACAGAAATCTTCAGTTTACCATTGCTAAGTACAGTCAACATCAGCACCAACAATATTGGTGGTGAAATTCCGGCTTCAATTTCTGATTGTTCCTCTCTAATATCCCTAGATTTTAGTCAAAACACTTTTGTGGGGGAAATCCCAAGGGGGGATAGGAAAACTGAAAGTAATTCACTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.14

Weight (kDa)

4.61

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 8 - 88 1.4e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 2 cut(s) 20, 213
AjnI CCWGG 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 73, 209
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 37
BfaI CTAG 2 cut(s) 104, 242
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMI GCAATG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 283
BspLI GGNNCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 161, 315
BstF5I GGATG 1 cut(s) 62
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 62
Csp6I GTAC 1 cut(s) 165
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviJI RGCY 2 cut(s) 8, 209
CviKI_1 RGCY 2 cut(s) 8, 209
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 2 cut(s) 161, 315
Eco130I CCWWGG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 9
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 9
FspBI CTAG 2 cut(s) 104, 242
GluI GCNGC 1 cut(s) 9
HapII CCGG 1 cut(s) 206
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 2 cut(s) 40, 117
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 73, 209
Hpy166II GTNNAC 2 cut(s) 152, 172
Hpy188I TCNGA 2 cut(s) 45, 220
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 152, 172
HpyCH4III ACNGT 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 161, 315
LpnPI CCDG 5 cut(s) 22, 36, 49, 108, 219
MaeI CTAG 2 cut(s) 104, 242
MaeIII GTNAC 1 cut(s) 129
MboII GAAGA 1 cut(s) 136
MluCI AATT 3 cut(s) 201, 213, 304
MnlI CCTC 3 cut(s) 22, 89, 238
MroXI GAANNNNTTC 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 76
OliI CACNNNNGTG 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 40, 117
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 76
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 263
SatI GCNGC 1 cut(s) 9
ScrFI CCNGG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 3 cut(s) 201, 213, 304
SspI AATATT 1 cut(s) 190
SspMI CTAG 2 cut(s) 104, 242
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 169
TasI AATT 3 cut(s) 201, 213, 304
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 2 cut(s) 40, 117
TseI GCWGC 1 cut(s) 8
XapI RAATTY 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 104, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.