Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001844.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

22207 .. 25150

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001844.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

atgattggccccaaaggttcagggctagagaactgggacccctcttctcattactactgctccttctctggagtttcatgtgaccaccaatcacgagttgttgctctcaacgtgtccggtttgtctctgtttggctcgcttccggcggagattcggcttctgaacaagctcgtcaacctcaccattgccaacaacaacttaacagggagtcttccccgggagatggccaacctgacttgtttaaagctcttgaacatctccaacaacttgttcgttggaagatttcccggagaaatcacgctcagaatgacagagcttgaggttctcgacgcctttgacaacaacttcactggtccacttccggtagagctcgtcaaactcaaaaagatcaaacatctaaatcttggcgggaacttcttcgccggagaaattcccgaaagttattcaaagattcaaagcttagaatatttgggcctgcacggtaactcgcttggcggaaagtttccgcccagcttggctctgttgcagaatctcaaggaattgtacgttggttacgacaacacttacagcggtggaattccaccagagttgggaacgatggagtcgctgcaagtgcttgacatggccagctgtaacctcaccggcacgattcctgtcagtctaggctttttgaagaacttacgctcgttgtttctacatattaaccatttgagtggttatatacctccaaaactttcaggtatggtgagtctgatgtctttggatctctctattaacgaactcaccggagaaataccagaaagtctctcggagctcaagaaccttaccctactcaacctgtataagaacagtttttacggcccgatacgcaacttcatcggcgatcttcctcatctggaggtgcttcaagtttgggggaacaactttacatttgaactacctgagagtcttggccggaatggaaggctcacaaacctcgatgtaaccggtaaccacctcaccgggttgattcctcgagatttgtgcaaaggagggaggttaaggtcgttggttctgatggataatcacttctttgggccgattccggaggaattgggtcggattcagctgaatgataactacttgtctggaaaacttccattgcagatgtcgggtgcctcacttgaaattctcacactttcccggaatcagatttctggaaaaatcccatccaccattggaaccctcaagaatttaaaacatcttttgctagatgggaacaaattctccgggcaagtaccaacagagatcttcagtttacaattgctaagtaaactcaacatgagcaccaacaatattggtggtgaaattccggcttcaatctctggttgttcctctctgacgttcctagattttagtcaaaacacttttgttggggaaatcccaagagggataagtaagctgaaagtaattcagtttcttaatttttcaaggaacaagctaacaggtccaatacctgtggaattcatatacatggggagcctcacaaatttggatctctcctataacaatttcattggtaggatcccagccggaggtcagtttttatggtcgaatgcttggtttgaaggaaatcccaatctgtgttcggcggaaaaggtgttgtgcagctctgataaccacccacgagctcgagaccataaagtcatactcactggagctctgctaactttgctactcatgttgcttcttatatatgtagttatcagggtttataggaagaggaagaccacaaagatagagaaatgtggttcttggaagctaacagttttccaagtacatctcaatctcaacatagaagacgttctccagtgtctaaaagcagagaacattatcggcaggggtggtgctggaattgtctaccgggggacaatgccaaatggtggtgatattgcaatcaaacagctgcagagggatcagggattttcagctgaaattaaaacattgggacaaatcaagcaccgaaatatagtgcggctgctggggtacatgtcgaacaaggacacgaatttgttgctgtacgagtacatgcctaatggtagcttgggacaacttttgcgtgggcctaatggagggcatttggggtgggaaatcaggtacaagattgctgtggaagctgccaagggattgtgttatctccaccatgactgttcgcctctgattatacacagggatataaagtcccataacatcttgctggactctaactttgaagctcatgttgctgactttgggcttgccaagtggtttcaaggaccaacagattgcatgtcttcgcttgctggtacctttggttacattgccccagagtacggttgcacactacaagtggatgagaaaatcgatgtgtacagctttggtgtggttctgctggaactagtaacagggaggaaaccagtggtggaactagtcgaagaagctgtgaacttagtaacttgggtaaggaaaaccacatcagaaatctctcagtcatccaatgcatcatctgtacttgcagttgtggactctacgctcagtgagttcccattggcaggtgtcgagcatatgttcaagatagcgatgatgtgcgtcaagaatcacagctcttcaagacctacaatgagggaagtagtctacttgctcgctaatcctcctccttctgctccaggcatgacaaacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

900

Amino Acids

99.05

Weight (kDa)

8.05

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2561
AasI	GACNNNNNNGTC	1 cut(s)	1682
Acc36I	ACCTGC	1 cut(s)	2561
Acc65I	GGTACC	1 cut(s)	2324
AccB1I	GGYRCC	2 cut(s)	1154, 2324
AccB7I	CCANNNNNTGG	1 cut(s)	1922
AccI	GTMKAC	2 cut(s)	1899, 2652
AccIII	TCCGGA	1 cut(s)	1084
AciI	CCGC	7 cut(s)	146, 408, 495, 506, 570, 1631, 2014
AclWI	GGATC	5 cut(s)	771, 1542, 1558, 1571, 1962
AcoI	YGGCCR	3 cut(s)	225, 624, 952
AcsI	RAATTY	9 cut(s)	429, 576, 1167, 1231, 1262, 1347, 1502, 1528, 2047
AcuI	CTGAAG	1 cut(s)	1276
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	7 cut(s)	223, 590, 1574, 1922, 2111, 2351, 2570
AflIII	ACRYGT	2 cut(s)	111, 2028
AgeI	ACCGGT	1 cut(s)	986
AhlI	ACTAGT	2 cut(s)	2416, 2446
AjnI	CCWGG	1 cut(s)	2683
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 531, 563
AloI	GAACNNNNNNTCC	2 cut(s)	1250, 1282
Alw21I	GWGCWC	5 cut(s)	372, 816, 1328, 1672, 1702
Alw26I	GTCTC	3 cut(s)	129, 809, 1668
AlwI	GGATC	5 cut(s)	771, 1542, 1558, 1571, 1962
Ama87I	CYCGRG	3 cut(s)	216, 1014, 1671
Aor13HI	TCCGGA	1 cut(s)	1084
AoxI	GGCC	8 cut(s)	7, 225, 472, 624, 859, 952, 1076, 2102
ApeKI	GCWGC	5 cut(s)	607, 1647, 1945, 2017, 2156
ApoI	RAATTY	9 cut(s)	429, 576, 1167, 1231, 1262, 1347, 1502, 1528, 2047
ArsI	GACNNNNNNTTYG	2 cut(s)	2231, 2263
AsiGI	ACCGGT	1 cut(s)	986
Asp700I	GAANNNNTTC	3 cut(s)	416, 1262, 1842
Asp718I	GGTACC	1 cut(s)	2324
AspS9I	GGNCC	9 cut(s)	8, 37, 353, 472, 860, 1076, 1487, 2102, 2294
AsuC2I	CCSGG	7 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904
AsuHPI	GGTGA	7 cut(s)	172, 631, 757, 775, 991, 1355, 1937
AvaI	CYCGRG	3 cut(s)	216, 1014, 1671
AvaII	GGWCC	4 cut(s)	37, 353, 1487, 2294
BalI	TGGCCA	2 cut(s)	227, 626
BamHI	GGATCC	1 cut(s)	1563
BanI	GGYRCC	2 cut(s)	1154, 2324
BanII	GRGCYC	4 cut(s)	372, 816, 1672, 1702
BauI	CACGAG	2 cut(s)	93, 1665
BbsI	GAAGAC	4 cut(s)	203, 1772, 1845, 2304
Bbv12I	GWGCWC	5 cut(s)	372, 816, 1328, 1672, 1702
BbvI	GCAGC	5 cut(s)	594, 1659, 1932, 2004, 2143
BccI	CCATC	5 cut(s)	217, 592, 1051, 1216, 1247
BceAI	ACGGC	1 cut(s)	874
BcgI	CGANNNNNNTGC	6 cut(s)	859, 893, 1005, 1039, 2035, 2069
BciT130I	CCWGG	1 cut(s)	2685
BcnI	CCSGG	7 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904
BcoDI	GTCTC	3 cut(s)	129, 809, 1668
BcuI	ACTAGT	2 cut(s)	2416, 2446
BfaI	CTAG	6 cut(s)	26, 662, 1250, 1388, 2417, 2447
BfmI	CTRYAG	1 cut(s)	1946
BfuAI	ACCTGC	1 cut(s)	2561
BglII	AGATCT	1 cut(s)	1287
BisI	GCNGC	6 cut(s)	608, 1648, 1946, 2015, 2018, 2157
BlsI	GCNGC	6 cut(s)	609, 1649, 1947, 2016, 2019, 2158
Bme1390I	CCNGG	8 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904, 2685
Bme18I	GGWCC	4 cut(s)	37, 353, 1487, 2294
BmeT110I	CYCGRG	3 cut(s)	216, 1014, 1671
BmgT120I	GGNCC	9 cut(s)	8, 37, 353, 472, 860, 1076, 1487, 2102, 2294
BmiI	GGNNCC	8 cut(s)	10, 38, 39, 1156, 1222, 1520, 1565, 2326
BmrFI	CCNGG	8 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904, 2685
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	2528
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	4 cut(s)	203, 1772, 1845, 2304
BpmI	CTGGAG	5 cut(s)	90, 917, 1716, 1832, 2667
BpuEI	CTTGAG	4 cut(s)	338, 518, 800, 1211
BpuMI	CCSGG	7 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904
Bsa29I	ATCGAT	1 cut(s)	2382
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	1668
BsaJI	CCNNGG	4 cut(s)	215, 216, 1903, 2160
BsaWI	WCCGGW	5 cut(s)	116, 361, 785, 986, 1084
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 1250, 1280
Bsc4I	CCNNNNNNNGG	7 cut(s)	223, 590, 1574, 1922, 2111, 2351, 2570
Bse118I	RCCGGY	2 cut(s)	641, 986
Bse1I	ACTGG	5 cut(s)	38, 355, 1699, 1849, 2435
Bse3DI	GCAATG	3 cut(s)	183, 1139, 2337
BseAI	TCCGGA	1 cut(s)	1084
BseBI	CCWGG	1 cut(s)	2685
BseCI	ATCGAT	1 cut(s)	2382
BseDI	CCNNGG	4 cut(s)	215, 216, 1903, 2160
BseGI	GGATG	3 cut(s)	1208, 2377, 2510
BseLI	CCNNNNNNNGG	7 cut(s)	223, 590, 1574, 1922, 2111, 2351, 2570
BseMI	GCAATG	3 cut(s)	183, 1139, 2337
BseMII	CTCAG	4 cut(s)	316, 933, 2519, 2566
BseNI	ACTGG	5 cut(s)	38, 355, 1699, 1849, 2435
BseRI	GAGGAG	1 cut(s)	2661
BseXI	GCAGC	5 cut(s)	594, 1659, 1932, 2004, 2143
BseYI	CCCAGC	3 cut(s)	509, 1567, 2020
BsgI	GTGCAG	2 cut(s)	461, 1666
BshFI	GGCC	8 cut(s)	9, 227, 474, 626, 861, 954, 1078, 2104
BshNI	GGYRCC	2 cut(s)	1154, 2324
BshTI	ACCGGT	1 cut(s)	986
BshVI	ATCGAT	1 cut(s)	2382
BsiHKAI	GWGCWC	5 cut(s)	372, 816, 1328, 1672, 1702
BsiHKCI	CYCGRG	3 cut(s)	216, 1014, 1671
BslFI	GGGAC	5 cut(s)	50, 1921, 2001, 2100, 2206
BslI	CCNNNNNNNGG	7 cut(s)	223, 590, 1574, 1922, 2111, 2351, 2570
BsmAI	GTCTC	3 cut(s)	129, 809, 1668
BsmFI	GGGAC	5 cut(s)	50, 1921, 2001, 2100, 2206
BsmI	GAATGC	1 cut(s)	1600
BsnI	GGCC	8 cut(s)	9, 227, 474, 626, 861, 954, 1078, 2104
Bso31I	GGTCTC	1 cut(s)	1668
BsoBI	CYCGRG	3 cut(s)	216, 1014, 1671
Bsp1286I	GDGCHC	5 cut(s)	372, 816, 1328, 1672, 1702
Bsp13I	TCCGGA	1 cut(s)	1084
Bsp1407I	TGTACA	1 cut(s)	2388
Bsp143I	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
BspACI	CCGC	7 cut(s)	146, 408, 495, 506, 570, 1631, 2014
BspANI	GGCC	8 cut(s)	9, 227, 474, 626, 861, 954, 1078, 2104
BspCNI	CTCAG	4 cut(s)	315, 934, 2518, 2565
BspDI	ATCGAT	1 cut(s)	2382
BspEI	TCCGGA	1 cut(s)	1084
BspLI	GGNNCC	8 cut(s)	10, 38, 39, 1156, 1222, 1520, 1565, 2326
BspMAI	CTGCAG	1 cut(s)	1950
BspMI	ACCTGC	1 cut(s)	2561
BspPI	GGATC	5 cut(s)	771, 1542, 1558, 1571, 1962
BspQI	GCTCTTC	1 cut(s)	2629
BspT107I	GGYRCC	2 cut(s)	1154, 2324
BspTNI	GGTCTC	1 cut(s)	1668
BsrDI	GCAATG	3 cut(s)	183, 1139, 2337
BsrFI	RCCGGY	2 cut(s)	641, 986
BsrGI	TGTACA	1 cut(s)	2388
BsrI	ACTGG	5 cut(s)	38, 355, 1699, 1849, 2435
BssAI	RCCGGY	2 cut(s)	641, 986
BssECI	CCNNGG	4 cut(s)	215, 216, 1903, 2160
BssMI	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	2 cut(s)	93, 1665
BssT1I	CCWWGG	1 cut(s)	2160
Bst2BI	CACGAG	2 cut(s)	93, 1665
Bst2UI	CCWGG	1 cut(s)	2685
Bst4CI	ACNGT	5 cut(s)	482, 851, 1807, 2189, 2354
Bst6I	CTCTTC	3 cut(s)	49, 1754, 2629
BstACI	GRCGYC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	2388
BstC8I	GCNNGC	6 cut(s)	137, 476, 628, 2277, 2319, 2661
BstDEI	CTNAG	8 cut(s)	302, 460, 942, 1307, 2467, 2505, 2552, 2700
BstEII	GGTNACC	1 cut(s)	989
BstENI	CCTNNNNNAGG	1 cut(s)	2109
BstF5I	GGATG	3 cut(s)	1208, 2377, 2510
BstKTI	GATC	7 cut(s)	390, 766, 886, 1290, 1537, 1566, 1957
BstMAI	GTCTC	3 cut(s)	129, 809, 1668
BstMBI	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
BstMWI	GCNNNNNNNGC	5 cut(s)	613, 867, 1711, 2153, 2261
BstNI	CCWGG	1 cut(s)	2685
BstNSI	RCATGY	3 cut(s)	2032, 2071, 2311
BstPI	GGTNACC	1 cut(s)	989
BstSCI	CCNGG	8 cut(s)	215, 216, 286, 1001, 1181, 1268, 1902, 2683
BstSFI	CTRYAG	1 cut(s)	1946
BstV1I	GCAGC	5 cut(s)	594, 1659, 1932, 2004, 2143
BstV2I	GAAGAC	4 cut(s)	203, 1772, 1845, 2304
BstX2I	RGATCY	4 cut(s)	763, 1287, 1534, 1563
BstXI	CCANNNNNNTGG	1 cut(s)	713
BstYI	RGATCY	4 cut(s)	763, 1287, 1534, 1563
Bsu15I	ATCGAT	1 cut(s)	2382
BsuRI	GGCC	8 cut(s)	9, 227, 474, 626, 861, 954, 1078, 2104
BsuTUI	ATCGAT	1 cut(s)	2382
BtgZI	GCGATG	1 cut(s)	2612
BtsCI	GGATG	3 cut(s)	1208, 2377, 2510
BtsIMutI	CAGTG	5 cut(s)	348, 1692, 1856, 2442, 2560
BveI	ACCTGC	1 cut(s)	2561
Cac8I	GCNNGC	6 cut(s)	137, 476, 628, 2277, 2319, 2661
Cfr10I	RCCGGY	2 cut(s)	641, 986
Cfr13I	GGNCC	9 cut(s)	8, 37, 353, 472, 860, 1076, 1487, 2102, 2294
Cfr9I	CCCGGG	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	2382
CseI	GACGC	2 cut(s)	338, 2596
CspAI	ACCGGT	1 cut(s)	986
CspCI	CAANNNNNGTGG	6 cut(s)	570, 605, 1321, 1356, 1479, 1514
DdeI	CTNAG	8 cut(s)	302, 460, 942, 1307, 2467, 2505, 2552, 2700
DpnI	GATC	7 cut(s)	389, 765, 885, 1289, 1536, 1565, 1956
DpnII	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
DraI	TTTAAA	2 cut(s)	243, 1236
DrdI	GACNNNNNNGTC	1 cut(s)	1682
DseDI	GACNNNNNNGTC	1 cut(s)	1682
EaeI	YGGCCR	3 cut(s)	225, 624, 952
Eam1104I	CTCTTC	3 cut(s)	49, 1754, 2629
EarI	CTCTTC	3 cut(s)	49, 1754, 2629
EciI	GGCGGA	4 cut(s)	161, 495, 510, 1646
Ecl136II	GAGCTC	4 cut(s)	370, 814, 1670, 1700
Eco130I	CCWWGG	1 cut(s)	2160
Eco24I	GRGCYC	4 cut(s)	372, 816, 1672, 1702
Eco31I	GGTCTC	1 cut(s)	1668
Eco47I	GGWCC	4 cut(s)	37, 353, 1487, 2294
Eco53kI	GAGCTC	4 cut(s)	370, 814, 1670, 1700
Eco57I	CTGAAG	1 cut(s)	1276
Eco88I	CYCGRG	3 cut(s)	216, 1014, 1671
Eco91I	GGTNACC	1 cut(s)	989
EcoICRI	GAGCTC	4 cut(s)	370, 814, 1670, 1700
EcoNI	CCTNNNNNAGG	1 cut(s)	2109
EcoO109I	RGGNCCY	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	989
EcoRI	GAATTC	2 cut(s)	576, 1502
EcoRII	CCWGG	1 cut(s)	2683
EcoT14I	CCWWGG	1 cut(s)	2160
EcoT22I	ATGCAT	1 cut(s)	2521
EcoT38I	GRGCYC	4 cut(s)	372, 816, 1672, 1702
ErhI	CCWWGG	1 cut(s)	2160
FaqI	GGGAC	5 cut(s)	50, 1921, 2001, 2100, 2206
FauI	CCCGC	1 cut(s)	401
FauNDI	CATATG	1 cut(s)	2583
FblI	GTMKAC	2 cut(s)	1899, 2652
Fnu4HI	GCNGC	6 cut(s)	608, 1648, 1946, 2015, 2018, 2157
FokI	GGATG	3 cut(s)	1195, 2384, 2497
FriOI	GRGCYC	4 cut(s)	372, 816, 1672, 1702
Fsp4HI	GCNGC	6 cut(s)	608, 1648, 1946, 2015, 2018, 2157
FspBI	CTAG	6 cut(s)	26, 662, 1250, 1388, 2417, 2447
GluI	GCNGC	6 cut(s)	608, 1648, 1946, 2015, 2018, 2157
GsaI	CCCAGC	3 cut(s)	513, 1571, 2024
GsuI	CTGGAG	5 cut(s)	90, 917, 1716, 1832, 2667
HaeIII	GGCC	8 cut(s)	9, 227, 474, 626, 861, 954, 1078, 2104
HgaI	GACGC	2 cut(s)	338, 2596
Hin1I	GRCGYC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	457
HphI	GGTGA	7 cut(s)	172, 631, 757, 775, 991, 1355, 1937
Hpy166II	GTNNAC	9 cut(s)	175, 356, 1298, 1313, 1900, 2389, 2464, 2542, 2653
Hpy8I	GTNNAC	9 cut(s)	175, 356, 1298, 1313, 1900, 2389, 2464, 2542, 2653
Hpy99I	CGWCG	1 cut(s)	332
HpyAV	CCTTC	4 cut(s)	73, 957, 1601, 2685
HpyCH4III	ACNGT	5 cut(s)	482, 851, 1807, 2189, 2354
HpyCH4IV	ACGT	4 cut(s)	111, 546, 1382, 1842
HpyF10VI	GCNNNNNNNGC	5 cut(s)	613, 867, 1711, 2153, 2261
HpyF3I	CTNAG	8 cut(s)	302, 460, 942, 1307, 2467, 2505, 2552, 2700
HpySE526I	ACGT	4 cut(s)	111, 546, 1382, 1842
Hsp92I	GRCGYC	1 cut(s)	330
KflI	GGGWCCC	1 cut(s)	37
Kpn2I	TCCGGA	1 cut(s)	1084
KpnI	GGTACC	1 cut(s)	2328
Kzo9I	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
LguI	GCTCTTC	1 cut(s)	2629
LmnI	GCTCC	5 cut(s)	65, 811, 1518, 1697, 2686
Lsp1109I	GCAGC	5 cut(s)	594, 1659, 1932, 2004, 2143
LweI	GCATC	1 cut(s)	2528
MaeI	CTAG	6 cut(s)	26, 662, 1250, 1388, 2417, 2447
MaeII	ACGT	4 cut(s)	111, 546, 1382, 1842
MaeIII	GTNAC	9 cut(s)	80, 482, 551, 632, 982, 989, 2333, 2419, 2470
MalI	GATC	7 cut(s)	389, 765, 885, 1289, 1536, 1565, 1956
MboI	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
MfeI	CAATTG	1 cut(s)	1301
MflI	RGATCY	4 cut(s)	763, 1287, 1534, 1563
MhlI	GDGCHC	5 cut(s)	372, 816, 1328, 1672, 1702
MlsI	TGGCCA	2 cut(s)	227, 626
MluNI	TGGCCA	2 cut(s)	227, 626
MlyI	GAGTC	6 cut(s)	217, 611, 757, 955, 2234, 2537
MmeI	TCCRAC	3 cut(s)	256, 285, 1079
Mox20I	TGGCCA	2 cut(s)	227, 626
Mph1103I	ATGCAT	1 cut(s)	2521
MroI	TCCGGA	1 cut(s)	1084
MroXI	GAANNNNTTC	3 cut(s)	416, 1262, 1842
MscI	TGGCCA	2 cut(s)	227, 626
MseI	TTAA	8 cut(s)	200, 242, 702, 774, 1040, 1235, 1461, 1977
MslI	CAYNNNNRTG	2 cut(s)	711, 1511
Msp20I	TGGCCA	2 cut(s)	227, 626
MspA1I	CMGCKG	5 cut(s)	570, 630, 1108, 1945, 1970
MspR9I	CCNGG	8 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904, 2685
MunI	CAATTG	1 cut(s)	1301
Mva1269I	GAATGC	1 cut(s)	1600
MvaI	CCWGG	1 cut(s)	2685
MwoI	GCNNNNNNNGC	5 cut(s)	613, 867, 1711, 2153, 2261
NciI	CCSGG	7 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904
NdeI	CATATG	1 cut(s)	2583
NdeII	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
NlaIV	GGNNCC	8 cut(s)	10, 38, 39, 1156, 1222, 1520, 1565, 2326
NmuCI	GTSAC	1 cut(s)	80
NsiI	ATGCAT	1 cut(s)	2521
NspI	RCATGY	3 cut(s)	2032, 2071, 2311
PaeR7I	CTCGAG	2 cut(s)	1014, 1671
PaqCI	CACCTGC	1 cut(s)	2561
PciI	ACATGT	1 cut(s)	2028
PciSI	GCTCTTC	1 cut(s)	2629
PcsI	WCGNNNNNNNCGW	1 cut(s)	552
PctI	GAATGC	1 cut(s)	1600
PdmI	GAANNNNTTC	3 cut(s)	416, 1262, 1842
PfeI	GAWTC	9 cut(s)	151, 451, 529, 649, 1009, 1081, 1102, 1186, 2614
PflMI	CCANNNNNTGG	1 cut(s)	1922
PfoI	TCCNGGA	2 cut(s)	286, 1181
PinAI	ACCGGT	1 cut(s)	986
PkrI	GCNGC	6 cut(s)	609, 1649, 1947, 2016, 2019, 2158
PleI	GAGTC	6 cut(s)	216, 610, 756, 954, 2234, 2537
PpsI	GAGTC	6 cut(s)	216, 610, 756, 954, 2234, 2537
PpuMI	RGGWCCY	1 cut(s)	37
PscI	ACATGT	1 cut(s)	2028
Psp124BI	GAGCTC	4 cut(s)	372, 816, 1672, 1702
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	2683
PspEI	GGTNACC	1 cut(s)	989
PspFI	CCCAGC	3 cut(s)	509, 1567, 2020
PspGI	CCWGG	1 cut(s)	2683
PspN4I	GGNNCC	8 cut(s)	10, 38, 39, 1156, 1222, 1520, 1565, 2326
PspPI	GGNCC	9 cut(s)	8, 37, 353, 472, 860, 1076, 1487, 2102, 2294
PspPPI	RGGWCCY	1 cut(s)	37
PsrI	GAACNNNNNNTAC	2 cut(s)	839, 871
PstI	CTGCAG	1 cut(s)	1950
PsuI	RGATCY	4 cut(s)	763, 1287, 1534, 1563
PvuII	CAGCTG	4 cut(s)	630, 1108, 1945, 1970
RseI	CAYNNNNRTG	2 cut(s)	711, 1511
SacI	GAGCTC	4 cut(s)	372, 816, 1672, 1702
SapI	GCTCTTC	1 cut(s)	2629
SaqAI	TTAA	8 cut(s)	200, 242, 702, 774, 1040, 1235, 1461, 1977
SatI	GCNGC	6 cut(s)	608, 1648, 1946, 2015, 2018, 2157
Sau3AI	GATC	7 cut(s)	387, 763, 883, 1287, 1534, 1563, 1954
Sau96I	GGNCC	9 cut(s)	8, 37, 353, 472, 860, 1076, 1487, 2102, 2294
SchI	GAGTC	6 cut(s)	217, 611, 757, 955, 2234, 2537
ScrFI	CCNGG	8 cut(s)	217, 218, 288, 1003, 1183, 1270, 1904, 2685
SduI	GDGCHC	5 cut(s)	372, 816, 1328, 1672, 1702
SfaNI	GCATC	1 cut(s)	2528
SfcI	CTRYAG	1 cut(s)	1946
Sfr274I	CTCGAG	2 cut(s)	1014, 1671
SinI	GGWCC	4 cut(s)	37, 353, 1487, 2294
SlaI	CTCGAG	2 cut(s)	1014, 1671
SmaI	CCCGGG	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	711, 1511
SmlI	CTYRAG	6 cut(s)	317, 533, 815, 1014, 1226, 1671
SmoI	CTYRAG	6 cut(s)	317, 533, 815, 1014, 1226, 1671
SpeI	ACTAGT	2 cut(s)	2416, 2446
SsiI	CCGC	7 cut(s)	146, 408, 495, 506, 570, 1631, 2014
SspI	AATATT	2 cut(s)	467, 1336
SspMI	CTAG	6 cut(s)	26, 662, 1250, 1388, 2417, 2447
SstI	GAGCTC	4 cut(s)	372, 816, 1672, 1702
StyD4I	CCNGG	8 cut(s)	215, 216, 286, 1001, 1181, 1268, 1902, 2683
StyI	CCWWGG	1 cut(s)	2160
TaaI	ACNGT	5 cut(s)	482, 851, 1807, 2189, 2354
TaiI	ACGT	4 cut(s)	114, 549, 1385, 1845
TaqI	TCGA	9 cut(s)	327, 978, 1015, 1592, 1672, 2033, 2382, 2451, 2577
TatI	WGTACW	4 cut(s)	1816, 2064, 2388, 2527
TauI	GCSGC	1 cut(s)	2017
TfiI	GAWTC	9 cut(s)	151, 451, 529, 649, 1009, 1081, 1102, 1186, 2614
Tru1I	TTAA	8 cut(s)	200, 242, 702, 774, 1040, 1235, 1461, 1977
Tru9I	TTAA	8 cut(s)	200, 242, 702, 774, 1040, 1235, 1461, 1977
TscAI	CASTG	5 cut(s)	355, 1699, 1856, 2442, 2560
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	5 cut(s)	607, 1647, 1945, 2017, 2156
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	66, 865, 1495, 1543
TspMI	CCCGGG	1 cut(s)	216
TspRI	CASTG	5 cut(s)	355, 1699, 1856, 2442, 2560
Van91I	CCANNNNNTGG	1 cut(s)	1922
VpaK11BI	GGWCC	4 cut(s)	37, 353, 1487, 2294
XagI	CCTNNNNNAGG	1 cut(s)	2109
XapI	RAATTY	9 cut(s)	429, 576, 1167, 1231, 1262, 1347, 1502, 1528, 2047
XceI	RCATGY	3 cut(s)	2032, 2071, 2311
XhoI	CTCGAG	2 cut(s)	1014, 1671
XmaI	CCCGGG	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	1899, 2652
XmnI	GAANNNNTTC	3 cut(s)	416, 1262, 1842
XspI	CTAG	6 cut(s)	26, 662, 1250, 1388, 2417, 2447
Zsp2I	ATGCAT	1 cut(s)	2521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.