Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001653.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

50264 .. 50569

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001653.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgaaagtggatgagaaaatcgatgtgtacagctttggtgtggttctgctggaactagtaacagggaggaaaccagtggtagaactagaggaagaagctgtgaacatagtaagttgggtgagaaaaaccgcatcacaaattccacagcaatccactacatcatctgtacttaaagttgtggactccagttctcagtgggttcccatttgcaagtgtcgagcatgcgttcaagatagcaatgatgtgtatcgagaatcacagctttgcaagacctacaatgagggaagttgtctacttccacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.32

Weight (kDa)

5.33

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	2 cut(s)	29, 168
AgsI	TTSAA	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	55
AluBI	AGCT	3 cut(s)	33, 98, 262
AluI	AGCT	3 cut(s)	33, 98, 262
ApoI	RAATTY	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	56, 86
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	74, 186
Bse3DI	GCAATG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	21
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	2 cut(s)	74, 186
BshVI	ATCGAT	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	27
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	244
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	74, 186
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	81, 200
Cac8I	GCNNGC	1 cut(s)	223
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	28, 167
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	3 cut(s)	33, 98, 262
CviKI_1	RGCY	3 cut(s)	33, 98, 262
CviQI	GTAC	2 cut(s)	28, 167
DdeI	CTNAG	1 cut(s)	192
FaeI	CATG	1 cut(s)	225
FaiI	YATR	2 cut(s)	107, 223
FatI	CATG	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	292
FokI	GGATG	1 cut(s)	23
FspBI	CTAG	2 cut(s)	56, 86
GsuI	CTGGAG	1 cut(s)	169
Hin1II	CATG	1 cut(s)	225
HinfI	GANTC	2 cut(s)	182, 254
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	4 cut(s)	28, 103, 181, 293
Hpy188III	TCNNGA	2 cut(s)	230, 251
Hpy8I	GTNNAC	4 cut(s)	28, 103, 181, 293
HpyCH4V	TGCA	2 cut(s)	210, 267
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	225
LpnPI	CCDG	4 cut(s)	35, 48, 87, 199
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	56, 86
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	104
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	3 cut(s)	60, 82, 274
MseI	TTAA	1 cut(s)	171
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	254
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	201
RsaI	GTAC	2 cut(s)	29, 168
RsaNI	GTAC	2 cut(s)	28, 167
SaqAI	TTAA	1 cut(s)	171
SchI	GAGTC	1 cut(s)	176
SetI	ASST	4 cut(s)	35, 100, 264, 275
SfaNI	GCATC	1 cut(s)	140
SpeI	ACTAGT	1 cut(s)	55
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	2 cut(s)	56, 86
TaqI	TCGA	3 cut(s)	21, 217, 250
TasI	AATT	1 cut(s)	138
TatI	WGTACW	2 cut(s)	27, 166
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	81, 200
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	81, 200
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	2 cut(s)	56, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.