Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001822.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

11618 .. 14593

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001822.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

atgctcaagaaagccatgattggccccaaaggttcagggctagagaactgggacccctcttctcattactactgctccttctctggagtttcatgtgaccaccaatcacgagttgttgctctcaacgtgtccggtttgtctctgtttggctcgcttccggcggagattcggcttctgaacaagctcgtcaacctcaccattgccaacaacaacttaacagggagtcttccccgggagatggccaacctgacttgtttaaagctcttgaacatctccaacaacttgttcgttggaagatttcccggagaaatcacgctcagaatgacagagcttgaggttctcgacgcctttgacaacaacttcactggtccacttccggtagagctcgtcaaactcaaaaagatcaaacatctaaatcttggcgggaacttcttcgccggagaaattcccgaaagttattcaaagattcaaagcttagaatatttgggcctgcacggtaactcgcttggcggaaagtttccgcccagcttggctctgttgcagaatctcaaggaattgtacgttggttacgacaacacttacagcggtggaattccaccagagttgggaacgatggagtcgctgcaagtgcttgacatggccagctgtaacctcaccggcacgattcctgtcagtctaggctttttgaagaacttacgctcgttgtttctacatattaaccatttgagtggttatatacctccaaaactttcaggtatggtgagtctgatgtctttggatctctctattaacgaactcaccggagaaataccagaaagtctctcggagctcaagaaccttaccctactcaacctgtataagaacagtttttacggcccgatacgcaacttcatcggcgatcttcctcatctggaggtgcttcaagtttgggggaacaactttacatttgaactacctgagagtcttggccggaatggaaggctcacaaacctcgatgtaaccggtaaccacctcaccgggttgattcctcgagatttgtgcaaaggagggaggttaagggcgttggttctgatggataatcacttctttgggccgattccggaggaattgggtcggtgcaagtcgctcgggcatatcctattgaagaaaaacacactcaacgggactattcctgccggaatctttaataacttacctgatttgatcaggattcagctgaatgataactacttgtctggaaaacttccattgcagatgtcgggtgcctcacttgaaattctcacactttcccggaatcagatttctggaaaaatcccatccaccattggaaccctcaagaatttaaaacatcttttgctagatgggaacaaattctccgggcaagtaccaacagagatcttcagtttacaattgctaagtaaactcaacatgagcaccaacaatattggtggtgaaattccggcttcaatctctggttgttcctctctgacgttcctagattttagtcaaaacacttttgttggggaaatcccaagagggataagtaagctgaaagtaattcagtttcttaatttttcaaggaacaagctaacaggtccaatacctgtggaattcatatacatggggagcctcacaaatttggatctctcctataacaatttcattggtaggatcccagccggaggtcagtttttatggtcgaatgcttggtttgaaggaaatcccaatctgtgttcggcggaaaaggtgttgtgcagctctgataaccacccacgagctcgagaccataaagtcatcatcgttggactcactggagttttccaagtacagctcaatctcaacatagaagacgttctccagtgtctaaaagcagagaacattatcggcaggggtggtgctggaattgtctaccgggggacaatgccaaatggtggtgatattgcaatcaaacagctgcagagggatcagggattttcagctgaaattaaaacattgggacaaatcaagcaccgaaatatagtgcggctgctggggtacatgtcgaacaaggacacgaatttgttgctgtacgagtacatgcctaatggtagcttgggacaacttttgcgtgggcctaatggagggcatttggggtgggaaatcaggtacaagattgctgtggaagctgccaagggattgtgttatctccaccatgactgttcgcctctgattatacacagggatgtaaagtcccataacatcttgctggactctaactttgaagctcatgttgctgactttgggcttgccaagtggtttcaaggaccaacagattgcatgtcttcgcttgctggtacctttggttacattgccccagagtacggttgcacactacaagtggatgagaaaatcgatgtgtacagctttggtgtggttctgctggaactagtaacagggaggaaaccagtggtggaactagtcgaagaagctgtgaacctagtaacttgggtaaggaaaaccacatcagaaatccctcagtcatccaatgcatcatctgtacttgcagttgtggactctaggctcagtgagttcccattggcaggtgtcgagcatatgttcaagatagcgatgatgtgcgtcaagaatcacagctcttcaagacctacaatgagggaagtagtctacttgctcgctaatcctcctccttctgctccaggcatgacaaacccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

903

Amino Acids

99.01

Weight (kDa)

7.84

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2570
AasI	GACNNNNNNGTC	1 cut(s)	1790
Acc36I	ACCTGC	1 cut(s)	2570
Acc65I	GGTACC	1 cut(s)	2333
AccB1I	GGYRCC	2 cut(s)	1262, 2333
AccB7I	CCANNNNNTGG	1 cut(s)	1931
AccI	GTMKAC	2 cut(s)	1908, 2661
AccIII	TCCGGA	1 cut(s)	1099
AciI	CCGC	7 cut(s)	161, 423, 510, 521, 585, 1739, 2023
AclWI	GGATC	5 cut(s)	786, 1650, 1666, 1679, 1971
AcoI	YGGCCR	3 cut(s)	240, 639, 967
AcsI	RAATTY	9 cut(s)	444, 591, 1275, 1339, 1370, 1455, 1610, 1636, 2056
AcuI	CTGAAG	1 cut(s)	1384
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 1931, 2120, 2360, 2579
AflIII	ACRYGT	2 cut(s)	126, 2037
AgeI	ACCGGT	1 cut(s)	1001
AhlI	ACTAGT	2 cut(s)	2425, 2455
AjnI	CCWGG	1 cut(s)	2692
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 546, 578
AloI	GAACNNNNNNTCC	2 cut(s)	1358, 1390
Alw21I	GWGCWC	4 cut(s)	387, 831, 1436, 1780
Alw26I	GTCTC	3 cut(s)	144, 824, 1776
AlwI	GGATC	5 cut(s)	786, 1650, 1666, 1679, 1971
Ama87I	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
Aor13HI	TCCGGA	1 cut(s)	1099
AoxI	GGCC	8 cut(s)	22, 240, 487, 639, 874, 967, 1091, 2111
ApeKI	GCWGC	5 cut(s)	622, 1755, 1954, 2026, 2165
ApoI	RAATTY	9 cut(s)	444, 591, 1275, 1339, 1370, 1455, 1610, 1636, 2056
ArsI	GACNNNNNNTTYG	2 cut(s)	2240, 2272
AsiGI	ACCGGT	1 cut(s)	1001
Asp700I	GAANNNNTTC	3 cut(s)	431, 1370, 1851
Asp718I	GGTACC	1 cut(s)	2333
AspS9I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2111, 2303
AsuC2I	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913
AsuHPI	GGTGA	7 cut(s)	187, 646, 772, 790, 1006, 1463, 1946
AvaI	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
AvaII	GGWCC	4 cut(s)	52, 368, 1595, 2303
BalI	TGGCCA	2 cut(s)	242, 641
BamHI	GGATCC	1 cut(s)	1671
BanI	GGYRCC	2 cut(s)	1262, 2333
BanII	GRGCYC	3 cut(s)	387, 831, 1780
BauI	CACGAG	2 cut(s)	108, 1773
BbsI	GAAGAC	3 cut(s)	218, 1854, 2313
Bbv12I	GWGCWC	4 cut(s)	387, 831, 1436, 1780
BbvI	GCAGC	5 cut(s)	609, 1767, 1941, 2013, 2152
BccI	CCATC	5 cut(s)	232, 607, 1066, 1324, 1355
BceAI	ACGGC	1 cut(s)	889
BcgI	CGANNNNNNTGC	8 cut(s)	874, 908, 1020, 1054, 1108, 1142, 2044, 2078
BciT130I	CCWGG	1 cut(s)	2694
BclI	TGATCA	1 cut(s)	1203
BcnI	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913
BcoDI	GTCTC	3 cut(s)	144, 824, 1776
BcuI	ACTAGT	2 cut(s)	2425, 2455
BfaI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2426, 2456, 2477, 2556
BfmI	CTRYAG	1 cut(s)	1955
BfuAI	ACCTGC	1 cut(s)	2570
BglII	AGATCT	1 cut(s)	1395
BisI	GCNGC	6 cut(s)	623, 1756, 1955, 2024, 2027, 2166
BlsI	GCNGC	6 cut(s)	624, 1757, 1956, 2025, 2028, 2167
Bme1390I	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913, 2694
Bme18I	GGWCC	4 cut(s)	52, 368, 1595, 2303
BmeT110I	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
BmgT120I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2111, 2303
BmiI	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2335
BmrFI	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913, 2694
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	2537
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	3 cut(s)	218, 1854, 2313
BpmI	CTGGAG	5 cut(s)	105, 932, 1833, 1841, 2676
BpuEI	CTTGAG	4 cut(s)	353, 533, 815, 1319
BpuMI	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913
Bsa29I	ATCGAT	1 cut(s)	2391
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	1776
BsaJI	CCNNGG	4 cut(s)	230, 231, 1912, 2169
BsaWI	WCCGGW	5 cut(s)	131, 376, 800, 1001, 1099
BsaXI	ACNNNNNCTCC	4 cut(s)	59, 89, 1358, 1388
Bsc4I	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 1931, 2120, 2360, 2579
Bse118I	RCCGGY	2 cut(s)	656, 1001
Bse1I	ACTGG	5 cut(s)	53, 370, 1816, 1858, 2444
Bse3DI	GCAATG	3 cut(s)	198, 1247, 2346
BseAI	TCCGGA	1 cut(s)	1099
BseBI	CCWGG	1 cut(s)	2694
BseCI	ATCGAT	1 cut(s)	2391
BseDI	CCNNGG	4 cut(s)	230, 231, 1912, 2169
BseGI	GGATG	4 cut(s)	1316, 2227, 2386, 2519
BseLI	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 1931, 2120, 2360, 2579
BseMI	GCAATG	3 cut(s)	198, 1247, 2346
BseMII	CTCAG	4 cut(s)	331, 948, 2528, 2575
BseNI	ACTGG	5 cut(s)	53, 370, 1816, 1858, 2444
BseRI	GAGGAG	1 cut(s)	2670
BseXI	GCAGC	5 cut(s)	609, 1767, 1941, 2013, 2152
BseYI	CCCAGC	3 cut(s)	524, 1675, 2029
BsgI	GTGCAG	2 cut(s)	476, 1774
BshFI	GGCC	8 cut(s)	24, 242, 489, 641, 876, 969, 1093, 2113
BshNI	GGYRCC	2 cut(s)	1262, 2333
BshTI	ACCGGT	1 cut(s)	1001
BshVI	ATCGAT	1 cut(s)	2391
BsiHKAI	GWGCWC	4 cut(s)	387, 831, 1436, 1780
BsiHKCI	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
BslFI	GGGAC	6 cut(s)	65, 1177, 1930, 2010, 2109, 2215
BslI	CCNNNNNNNGG	7 cut(s)	238, 605, 1682, 1931, 2120, 2360, 2579
BsmAI	GTCTC	3 cut(s)	144, 824, 1776
BsmFI	GGGAC	6 cut(s)	65, 1177, 1930, 2010, 2109, 2215
BsmI	GAATGC	1 cut(s)	1708
BsnI	GGCC	8 cut(s)	24, 242, 489, 641, 876, 969, 1093, 2113
Bso31I	GGTCTC	1 cut(s)	1776
BsoBI	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
Bsp1286I	GDGCHC	4 cut(s)	387, 831, 1436, 1780
Bsp13I	TCCGGA	1 cut(s)	1099
Bsp1407I	TGTACA	1 cut(s)	2397
Bsp143I	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
BspACI	CCGC	7 cut(s)	161, 423, 510, 521, 585, 1739, 2023
BspANI	GGCC	8 cut(s)	24, 242, 489, 641, 876, 969, 1093, 2113
BspCNI	CTCAG	4 cut(s)	330, 949, 2527, 2574
BspDI	ATCGAT	1 cut(s)	2391
BspEI	TCCGGA	1 cut(s)	1099
BspLI	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2335
BspMAI	CTGCAG	1 cut(s)	1959
BspMI	ACCTGC	1 cut(s)	2570
BspPI	GGATC	5 cut(s)	786, 1650, 1666, 1679, 1971
BspQI	GCTCTTC	1 cut(s)	2638
BspT107I	GGYRCC	2 cut(s)	1262, 2333
BspTNI	GGTCTC	1 cut(s)	1776
BsrDI	GCAATG	3 cut(s)	198, 1247, 2346
BsrFI	RCCGGY	2 cut(s)	656, 1001
BsrGI	TGTACA	1 cut(s)	2397
BsrI	ACTGG	5 cut(s)	53, 370, 1816, 1858, 2444
BssAI	RCCGGY	2 cut(s)	656, 1001
BssECI	CCNNGG	4 cut(s)	230, 231, 1912, 2169
BssMI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
BssNI	GRCGYC	1 cut(s)	345
BssSI	CACGAG	2 cut(s)	108, 1773
BssT1I	CCWWGG	1 cut(s)	2169
Bst2BI	CACGAG	2 cut(s)	108, 1773
Bst2UI	CCWGG	1 cut(s)	2694
Bst4CI	ACNGT	4 cut(s)	497, 866, 2198, 2363
Bst6I	CTCTTC	2 cut(s)	64, 2638
BstACI	GRCGYC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	2397
BstC8I	GCNNGC	6 cut(s)	152, 491, 643, 2286, 2328, 2670
BstDEI	CTNAG	7 cut(s)	317, 475, 957, 1415, 2514, 2561, 2709
BstEII	GGTNACC	1 cut(s)	1004
BstENI	CCTNNNNNAGG	1 cut(s)	2118
BstF5I	GGATG	4 cut(s)	1316, 2227, 2386, 2519
BstKTI	GATC	8 cut(s)	405, 781, 901, 1206, 1398, 1645, 1674, 1966
BstMAI	GTCTC	3 cut(s)	144, 824, 1776
BstMBI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
BstMWI	GCNNNNNNNGC	4 cut(s)	628, 882, 2162, 2270
BstNI	CCWGG	1 cut(s)	2694
BstNSI	RCATGY	3 cut(s)	2041, 2080, 2320
BstPI	GGTNACC	1 cut(s)	1004
BstSCI	CCNGG	8 cut(s)	230, 231, 301, 1016, 1289, 1376, 1911, 2692
BstSFI	CTRYAG	1 cut(s)	1955
BstV1I	GCAGC	5 cut(s)	609, 1767, 1941, 2013, 2152
BstV2I	GAAGAC	3 cut(s)	218, 1854, 2313
BstX2I	RGATCY	4 cut(s)	778, 1395, 1642, 1671
BstXI	CCANNNNNNTGG	1 cut(s)	728
BstYI	RGATCY	4 cut(s)	778, 1395, 1642, 1671
Bsu15I	ATCGAT	1 cut(s)	2391
BsuRI	GGCC	8 cut(s)	24, 242, 489, 641, 876, 969, 1093, 2113
BsuTUI	ATCGAT	1 cut(s)	2391
BtgZI	GCGATG	1 cut(s)	2621
BtsCI	GGATG	4 cut(s)	1316, 2227, 2386, 2519
BtsIMutI	CAGTG	5 cut(s)	363, 1809, 1865, 2451, 2569
BveI	ACCTGC	1 cut(s)	2570
Cac8I	GCNNGC	6 cut(s)	152, 491, 643, 2286, 2328, 2670
Cfr10I	RCCGGY	2 cut(s)	656, 1001
Cfr13I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2111, 2303
Cfr9I	CCCGGG	1 cut(s)	231
ClaI	ATCGAT	1 cut(s)	2391
CseI	GACGC	2 cut(s)	353, 2605
CspAI	ACCGGT	1 cut(s)	1001
CspCI	CAANNNNNGTGG	6 cut(s)	585, 620, 1429, 1464, 1587, 1622
DdeI	CTNAG	7 cut(s)	317, 475, 957, 1415, 2514, 2561, 2709
DpnI	GATC	8 cut(s)	404, 780, 900, 1205, 1397, 1644, 1673, 1965
DpnII	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
DraI	TTTAAA	2 cut(s)	258, 1344
DrdI	GACNNNNNNGTC	1 cut(s)	1790
DseDI	GACNNNNNNGTC	1 cut(s)	1790
EaeI	YGGCCR	3 cut(s)	240, 639, 967
Eam1104I	CTCTTC	2 cut(s)	64, 2638
EarI	CTCTTC	2 cut(s)	64, 2638
EciI	GGCGGA	4 cut(s)	176, 510, 525, 1754
Ecl136II	GAGCTC	3 cut(s)	385, 829, 1778
Eco130I	CCWWGG	1 cut(s)	2169
Eco24I	GRGCYC	3 cut(s)	387, 831, 1780
Eco31I	GGTCTC	1 cut(s)	1776
Eco47I	GGWCC	4 cut(s)	52, 368, 1595, 2303
Eco53kI	GAGCTC	3 cut(s)	385, 829, 1778
Eco57I	CTGAAG	1 cut(s)	1384
Eco88I	CYCGRG	4 cut(s)	231, 1029, 1127, 1779
Eco91I	GGTNACC	1 cut(s)	1004
EcoICRI	GAGCTC	3 cut(s)	385, 829, 1778
EcoNI	CCTNNNNNAGG	1 cut(s)	2118
EcoO109I	RGGNCCY	1 cut(s)	52
EcoO65I	GGTNACC	1 cut(s)	1004
EcoRI	GAATTC	2 cut(s)	591, 1610
EcoRII	CCWGG	1 cut(s)	2692
EcoT14I	CCWWGG	1 cut(s)	2169
EcoT22I	ATGCAT	1 cut(s)	2530
EcoT38I	GRGCYC	3 cut(s)	387, 831, 1780
ErhI	CCWWGG	1 cut(s)	2169
FaqI	GGGAC	6 cut(s)	65, 1177, 1930, 2010, 2109, 2215
FauI	CCCGC	1 cut(s)	416
FauNDI	CATATG	1 cut(s)	2592
FbaI	TGATCA	1 cut(s)	1203
FblI	GTMKAC	2 cut(s)	1908, 2661
Fnu4HI	GCNGC	6 cut(s)	623, 1756, 1955, 2024, 2027, 2166
FokI	GGATG	4 cut(s)	1303, 2234, 2393, 2506
FriOI	GRGCYC	3 cut(s)	387, 831, 1780
Fsp4HI	GCNGC	6 cut(s)	623, 1756, 1955, 2024, 2027, 2166
FspBI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2426, 2456, 2477, 2556
GluI	GCNGC	6 cut(s)	623, 1756, 1955, 2024, 2027, 2166
GsaI	CCCAGC	3 cut(s)	528, 1679, 2033
GsuI	CTGGAG	5 cut(s)	105, 932, 1833, 1841, 2676
HaeIII	GGCC	8 cut(s)	24, 242, 489, 641, 876, 969, 1093, 2113
HgaI	GACGC	2 cut(s)	353, 2605
Hin1I	GRCGYC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	472
HphI	GGTGA	7 cut(s)	187, 646, 772, 790, 1006, 1463, 1946
Hpy166II	GTNNAC	9 cut(s)	190, 371, 1406, 1421, 1909, 2398, 2473, 2551, 2662
Hpy8I	GTNNAC	9 cut(s)	190, 371, 1406, 1421, 1909, 2398, 2473, 2551, 2662
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	4 cut(s)	88, 972, 1709, 2694
HpyCH4III	ACNGT	4 cut(s)	497, 866, 2198, 2363
HpyCH4IV	ACGT	4 cut(s)	126, 561, 1490, 1851
HpyF10VI	GCNNNNNNNGC	4 cut(s)	628, 882, 2162, 2270
HpyF3I	CTNAG	7 cut(s)	317, 475, 957, 1415, 2514, 2561, 2709
HpySE526I	ACGT	4 cut(s)	126, 561, 1490, 1851
Hsp92I	GRCGYC	1 cut(s)	345
KflI	GGGWCCC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	1099
KpnI	GGTACC	1 cut(s)	2337
Ksp22I	TGATCA	1 cut(s)	1203
Kzo9I	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
LguI	GCTCTTC	1 cut(s)	2638
LmnI	GCTCC	4 cut(s)	80, 826, 1626, 2695
Lsp1109I	GCAGC	5 cut(s)	609, 1767, 1941, 2013, 2152
LweI	GCATC	1 cut(s)	2537
MaeI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2426, 2456, 2477, 2556
MaeII	ACGT	4 cut(s)	126, 561, 1490, 1851
MaeIII	GTNAC	9 cut(s)	95, 497, 566, 647, 997, 1004, 2342, 2428, 2479
MalI	GATC	8 cut(s)	404, 780, 900, 1205, 1397, 1644, 1673, 1965
MboI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
MfeI	CAATTG	1 cut(s)	1409
MflI	RGATCY	4 cut(s)	778, 1395, 1642, 1671
MhlI	GDGCHC	4 cut(s)	387, 831, 1436, 1780
MlsI	TGGCCA	2 cut(s)	242, 641
MluNI	TGGCCA	2 cut(s)	242, 641
MlyI	GAGTC	7 cut(s)	232, 626, 772, 970, 1800, 2243, 2546
MmeI	TCCRAC	3 cut(s)	271, 300, 1783
Mox20I	TGGCCA	2 cut(s)	242, 641
Mph1103I	ATGCAT	1 cut(s)	2530
MroI	TCCGGA	1 cut(s)	1099
MroXI	GAANNNNTTC	3 cut(s)	431, 1370, 1851
MscI	TGGCCA	2 cut(s)	242, 641
MseI	TTAA	9 cut(s)	215, 257, 717, 789, 1055, 1185, 1343, 1569, 1986
MslI	CAYNNNNRTG	3 cut(s)	726, 1619, 2220
Msp20I	TGGCCA	2 cut(s)	242, 641
MspA1I	CMGCKG	5 cut(s)	585, 645, 1216, 1954, 1979
MspR9I	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913, 2694
MunI	CAATTG	1 cut(s)	1409
Mva1269I	GAATGC	1 cut(s)	1708
MvaI	CCWGG	1 cut(s)	2694
MwoI	GCNNNNNNNGC	4 cut(s)	628, 882, 2162, 2270
NciI	CCSGG	7 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913
NdeI	CATATG	1 cut(s)	2592
NdeII	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
NlaIV	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2335
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	2530
NspI	RCATGY	3 cut(s)	2041, 2080, 2320
PaeR7I	CTCGAG	2 cut(s)	1029, 1779
PaqCI	CACCTGC	1 cut(s)	2570
PciI	ACATGT	1 cut(s)	2037
PciSI	GCTCTTC	1 cut(s)	2638
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PctI	GAATGC	1 cut(s)	1708
PdmI	GAANNNNTTC	3 cut(s)	431, 1370, 1851
PflMI	CCANNNNNTGG	1 cut(s)	1931
PfoI	TCCNGGA	2 cut(s)	301, 1289
PinAI	ACCGGT	1 cut(s)	1001
PkrI	GCNGC	6 cut(s)	624, 1757, 1956, 2025, 2028, 2167
PleI	GAGTC	7 cut(s)	231, 625, 771, 969, 1800, 2243, 2546
PpsI	GAGTC	7 cut(s)	231, 625, 771, 969, 1800, 2243, 2546
PpuMI	RGGWCCY	1 cut(s)	52
PscI	ACATGT	1 cut(s)	2037
Psp124BI	GAGCTC	3 cut(s)	387, 831, 1780
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	2692
PspEI	GGTNACC	1 cut(s)	1004
PspFI	CCCAGC	3 cut(s)	524, 1675, 2029
PspGI	CCWGG	1 cut(s)	2692
PspN4I	GGNNCC	8 cut(s)	25, 53, 54, 1264, 1330, 1628, 1673, 2335
PspPI	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2111, 2303
PspPPI	RGGWCCY	1 cut(s)	52
PsrI	GAACNNNNNNTAC	2 cut(s)	854, 886
PstI	CTGCAG	1 cut(s)	1959
PsuI	RGATCY	4 cut(s)	778, 1395, 1642, 1671
PvuII	CAGCTG	4 cut(s)	645, 1216, 1954, 1979
RseI	CAYNNNNRTG	3 cut(s)	726, 1619, 2220
SacI	GAGCTC	3 cut(s)	387, 831, 1780
SapI	GCTCTTC	1 cut(s)	2638
SaqAI	TTAA	9 cut(s)	215, 257, 717, 789, 1055, 1185, 1343, 1569, 1986
SatI	GCNGC	6 cut(s)	623, 1756, 1955, 2024, 2027, 2166
Sau3AI	GATC	8 cut(s)	402, 778, 898, 1203, 1395, 1642, 1671, 1963
Sau96I	GGNCC	9 cut(s)	23, 52, 368, 487, 875, 1091, 1595, 2111, 2303
SchI	GAGTC	7 cut(s)	232, 626, 772, 970, 1800, 2243, 2546
ScrFI	CCNGG	8 cut(s)	232, 233, 303, 1018, 1291, 1378, 1913, 2694
SduI	GDGCHC	4 cut(s)	387, 831, 1436, 1780
SfaNI	GCATC	1 cut(s)	2537
SfcI	CTRYAG	1 cut(s)	1955
Sfr274I	CTCGAG	2 cut(s)	1029, 1779
SinI	GGWCC	4 cut(s)	52, 368, 1595, 2303
SlaI	CTCGAG	2 cut(s)	1029, 1779
SmaI	CCCGGG	1 cut(s)	233
SmiMI	CAYNNNNRTG	3 cut(s)	726, 1619, 2220
SmlI	CTYRAG	7 cut(s)	5, 332, 548, 830, 1029, 1334, 1779
SmoI	CTYRAG	7 cut(s)	5, 332, 548, 830, 1029, 1334, 1779
SpeI	ACTAGT	2 cut(s)	2425, 2455
SsiI	CCGC	7 cut(s)	161, 423, 510, 521, 585, 1739, 2023
SspI	AATATT	2 cut(s)	482, 1444
SspMI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2426, 2456, 2477, 2556
SstI	GAGCTC	3 cut(s)	387, 831, 1780
StyD4I	CCNGG	8 cut(s)	230, 231, 301, 1016, 1289, 1376, 1911, 2692
StyI	CCWWGG	1 cut(s)	2169
TaaI	ACNGT	4 cut(s)	497, 866, 2198, 2363
TaiI	ACGT	4 cut(s)	129, 564, 1493, 1854
TaqI	TCGA	9 cut(s)	342, 993, 1030, 1700, 1780, 2042, 2391, 2460, 2586
TatI	WGTACW	4 cut(s)	1825, 2073, 2397, 2536
TauI	GCSGC	1 cut(s)	2026
Tru1I	TTAA	9 cut(s)	215, 257, 717, 789, 1055, 1185, 1343, 1569, 1986
Tru9I	TTAA	9 cut(s)	215, 257, 717, 789, 1055, 1185, 1343, 1569, 1986
TscAI	CASTG	5 cut(s)	370, 1816, 1865, 2451, 2569
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	5 cut(s)	622, 1755, 1954, 2026, 2165
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	4 cut(s)	81, 880, 1603, 1651
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	5 cut(s)	370, 1816, 1865, 2451, 2569
Van91I	CCANNNNNTGG	1 cut(s)	1931
VpaK11BI	GGWCC	4 cut(s)	52, 368, 1595, 2303
XagI	CCTNNNNNAGG	1 cut(s)	2118
XapI	RAATTY	9 cut(s)	444, 591, 1275, 1339, 1370, 1455, 1610, 1636, 2056
XceI	RCATGY	3 cut(s)	2041, 2080, 2320
XhoI	CTCGAG	2 cut(s)	1029, 1779
XmaI	CCCGGG	1 cut(s)	231
XmiI	GTMKAC	2 cut(s)	1908, 2661
XmnI	GAANNNNTTC	3 cut(s)	431, 1370, 1851
XspI	CTAG	8 cut(s)	41, 677, 1358, 1496, 2426, 2456, 2477, 2556
Zsp2I	ATGCAT	1 cut(s)	2530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.