Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

31374311 .. 31375045

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATTCAAATCTTGGAGTATCTAGGCCTCAATAGTATCGGGCTCACCGGAAAGTTCCCTTCCATCTTGGCTCGGTTGAAGAATGTCAAGGAATTGCATATGGTCTATAACAAATTCGATGGTGGACTTCCTGAGTTGGGAATGATGGAGTCGTTGCAAGTGCTTGACATGGTTAGCTGTAACCTAAAAGGCACGATTCCTATCATTCTAAGCTTTTTGAAGAACTTACGTGTGTTGTTTTTACAGATTAACCATTTCAGTGGTTATATACTTCCACAACTTTCAGGTATGGTGAGTCTGACGGCTTTGGATCTCTCTCTTAACAAACTCACCGGAGAAATACCAGAAAGTCTCTCGGAGCTCAAGAACCTTGCCCTTCTCAACATGTGTGAAAACAATCTCAACGGGACTATTCCTGCTGGAATCTTCAGCTTTCCTTATGTGAACAGAATTGAGCTCAATGATAATTACTTGTCCGGAGAACTCCCGATGCAGATGCCTAGTGCCTGGCTTGAAACCCTCATTCTTTCTAATAATCAAATTTCTGGAAGAATTCCATCAACCATTGGAAATCTTCACCGTTTACAAATTCTTGATCTGGAAATGAATAGATTCTCTGGGCAAGTACCAGAGGAAATCTTCAATTTACAGCGGCTAGAGGCACTCTACATCGGGACCAACAATTTTGGTTGTTGGTATGCATATACCTCCCAGGCGCAAGTATCGGAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

244

Amino Acids

27.29

Weight (kDa)

5.1

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	171 - 203	2.5e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	171 - 229	5e-07	Leucine rich repeat
LRR_14	PF23598	174 - 226	1.9e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	476
AciI	CCGC	1 cut(s)	652
AclWI	GGATC	1 cut(s)	318
AcsI	RAATTY	4 cut(s)	113, 540, 552, 588
AcuI	CTGAAG	1 cut(s)	412
AfaI	GTAC	1 cut(s)	627
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	2 cut(s)	229, 384
AgsI	TTSAA	5 cut(s)	8, 79, 220, 515, 643
AjnI	CCWGG	2 cut(s)	506, 711
AluBI	AGCT	5 cut(s)	177, 213, 361, 432, 457
AluI	AGCT	5 cut(s)	177, 213, 361, 432, 457
Alw21I	GWGCWC	2 cut(s)	363, 459
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	318
Aor13HI	TCCGGA	1 cut(s)	476
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	4 cut(s)	113, 540, 552, 588
Asp700I	GAANNNNTTC	1 cut(s)	611
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	4 cut(s)	37, 304, 322, 569
AvaII	GGWCC	1 cut(s)	675
BanII	GRGCYC	3 cut(s)	45, 363, 459
Bbv12I	GWGCWC	2 cut(s)	363, 459
BccI	CCATC	4 cut(s)	71, 113, 139, 565
BceAI	ACGGC	1 cut(s)	318
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	2 cut(s)	508, 713
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	3 cut(s)	23, 501, 656
BisI	GCNGC	1 cut(s)	653
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	2 cut(s)	508, 713
Bme18I	GGWCC	1 cut(s)	675
BmgT120I	GGNCC	1 cut(s)	675
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	2 cut(s)	508, 713
BmsI	GCATC	2 cut(s)	480, 486
BpuEI	CTTGAG	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	230
BsaBI	GATNNNNATC	2 cut(s)	8, 200
BsaJI	CCNNGG	1 cut(s)	711
BsaWI	WCCGGW	3 cut(s)	47, 332, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse8I	GATNNNNATC	2 cut(s)	8, 200
BseAI	TCCGGA	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	508, 713
BseDI	CCNNGG	1 cut(s)	711
BseJI	GATNNNNATC	2 cut(s)	8, 200
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	363, 459
BsiSI	CCGG	3 cut(s)	48, 333, 477
BslFI	GGGAC	2 cut(s)	421, 688
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	2 cut(s)	421, 688
BsnI	GGCC	1 cut(s)	27
Bsp1286I	GDGCHC	3 cut(s)	45, 363, 459
Bsp13I	TCCGGA	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	310, 595
BspACI	CCGC	1 cut(s)	652
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	711
BssMI	GATC	2 cut(s)	310, 595
Bst2UI	CCWGG	2 cut(s)	508, 713
Bst4CI	ACNGT	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	132, 209
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	2 cut(s)	313, 598
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	2 cut(s)	310, 595
BstNI	CCWGG	2 cut(s)	508, 713
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	506, 711
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	675
Csp6I	GTAC	1 cut(s)	626
CviAII	CATG	2 cut(s)	169, 385
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	2 cut(s)	132, 209
DpnI	GATC	2 cut(s)	312, 597
DpnII	GATC	2 cut(s)	310, 595
Ecl136II	GAGCTC	2 cut(s)	361, 457
Eco147I	AGGCCT	1 cut(s)	27
Eco24I	GRGCYC	3 cut(s)	45, 363, 459
Eco47I	GGWCC	1 cut(s)	675
Eco53kI	GAGCTC	2 cut(s)	361, 457
Eco57I	CTGAAG	1 cut(s)	412
EcoICRI	GAGCTC	2 cut(s)	361, 457
EcoRI	GAATTC	1 cut(s)	552
EcoRII	CCWGG	2 cut(s)	506, 711
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	3 cut(s)	45, 363, 459
FaeI	CATG	2 cut(s)	172, 388
FaqI	GGGAC	2 cut(s)	421, 688
FatI	CATG	2 cut(s)	168, 384
FauNDI	CATATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	653
FriOI	GRGCYC	3 cut(s)	45, 363, 459
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	3 cut(s)	23, 501, 656
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	1 cut(s)	653
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	48, 333, 477
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	2 cut(s)	172, 388
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HindIII	AAGCTT	1 cut(s)	211
HinfI	GANTC	6 cut(s)	4, 149, 196, 295, 423, 612
HpaII	CCGG	3 cut(s)	48, 333, 477
HphI	GGTGA	4 cut(s)	37, 304, 322, 569
Hpy166II	GTNNAC	3 cut(s)	125, 445, 584
Hpy188I	TCNGA	3 cut(s)	300, 358, 727
Hpy188III	TCNNGA	8 cut(s)	131, 364, 477, 487, 546, 593, 599, 673
Hpy8I	GTNNAC	3 cut(s)	125, 445, 584
HpyAV	CCTTC	2 cut(s)	69, 386
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	97, 157, 493, 701
HpyF3I	CTNAG	2 cut(s)	132, 209
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	172, 388
HspAI	GCGC	1 cut(s)	716
Kpn2I	TCCGGA	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	310, 595
LmnI	GCTCC	1 cut(s)	358
LweI	GCATC	2 cut(s)	480, 486
MaeI	CTAG	3 cut(s)	23, 501, 656
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	312, 597
MboI	GATC	2 cut(s)	310, 595
MboII	GAAGA	6 cut(s)	91, 232, 418, 561, 566, 631
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	45, 363, 459
MluCI	AATT	9 cut(s)	92, 113, 450, 466, 540, 552, 588, 643, 682
MlyI	GAGTC	2 cut(s)	158, 304
MnlI	CCTC	5 cut(s)	38, 530, 625, 652, 718
Mph1103I	ATGCAT	1 cut(s)	703
MroI	TCCGGA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	2 cut(s)	249, 321
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	3 cut(s)	48, 333, 477
MspR9I	CCNGG	2 cut(s)	508, 713
MvaI	CCWGG	2 cut(s)	508, 713
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	2 cut(s)	310, 595
NlaIII	CATG	2 cut(s)	172, 388
NlaIV	GGNNCC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	27
PciI	ACATGT	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	4, 196, 423, 612
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	2 cut(s)	157, 303
PpsI	GAGTC	2 cut(s)	157, 303
Ppu21I	YACGTR	1 cut(s)	230
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	2 cut(s)	363, 459
Psp6I	CCWGG	2 cut(s)	506, 711
PspGI	CCWGG	2 cut(s)	506, 711
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	2 cut(s)	363, 459
SaqAI	TTAA	2 cut(s)	249, 321
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	2 cut(s)	310, 595
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	2 cut(s)	158, 304
ScrFI	CCNGG	2 cut(s)	508, 713
SduI	GDGCHC	3 cut(s)	45, 363, 459
SfaNI	GCATC	2 cut(s)	480, 486
SinI	GGWCC	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	9 cut(s)	92, 113, 450, 466, 540, 552, 588, 643, 682
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	652
SspMI	CTAG	3 cut(s)	23, 501, 656
SstI	GAGCTC	2 cut(s)	363, 459
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	506, 711
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	117
TasI	AATT	9 cut(s)	92, 113, 450, 466, 540, 552, 588, 643, 682
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	4 cut(s)	4, 196, 423, 612
Tru1I	TTAA	2 cut(s)	249, 321
Tru9I	TTAA	2 cut(s)	249, 321
TscAI	CASTG	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	675
XapI	RAATTY	4 cut(s)	113, 540, 552, 588
XceI	RCATGY	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	3 cut(s)	23, 501, 656
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.