Rmu_sc0000319.1_g000027
NAC Family

Probably inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000319.1
OG0000461
Physical Location & Seq
Reverse (-)
128512 .. 132444
3933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000319.1_g000027.1.cds

Sequence Viewer

Length: 1335 bp
atgaggcattgtcgtctgagattcattttagacaacagaggtatcccaacagtgtcgtctgagattcatttcagactacagagaccggttgatagtcctattgagcagaatcattgtttggctaagtatccagatcaggtacctactgatcgagctcgctatcagaggtcttgcagagctgtgattctcaacgaacatcattgctatcttaaacacatgctcgacacctgccaatgggaacctactgagcctggagtccacaactgcaagtgccctactgatactgaaataccagaaagtctctcagagctcaacctgcgtaagaacaatttttacggcccgatacccaacttcatcggcgatcttcctcatctggaggtgcttgaactttgtgagaacaactttacatatgaactacctgagagtcttggccggaatggaaggctcacaaacctcgatgtaaccggtaaccacctcaccgggttgattcctcgagatttgtgcaaaggaggaaggttgaggacgttggttctgatggataatcacttctttgggccgattccggaggaattgggtcggtgcaagtcgctcgggcatatcctattgaagaaaaacacactcaacgggactattcctgccggaatctttaataacttacctgatttgatcaggattgagctgaatgataactacttgtctggaaaacttccattgcagatgtcgggtgcctcactcgaaattctcacactttcccggaatcagatttctggaaaaatcccatccaccattggaatcctcaagaatttaaaacagctttcgctagatgggaacagattctccggccaagtaccaacagagatcttcagtttacaattgctaagtaaactcaacatgagcaccaacaatattggtggtgaaattccggcttcaatctctggttgttcctctctgacgttcctagattttagtcaaaacacttttgttggggaaatcccaagagggataagtaagctgaaagtaattcagtttcttaatttttcaaggaacaagctaacaggtccaatacctgtggaattcatatacatggggagcctcacaaatttggatctctcctataacaatttcattggtaggatcccagccggaggtcagtttttatggtcgaatgcttggtttgaaggaaatcccaatctgtgttcggcggaaaaggtgttgtgcagctctgataaccacccacgagctcgagaccataaagtcatcatcgttggactcactggagctctgctaactgcagcaatgaatgtagcctccaataattatgaaaatcggccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

444

Amino Acids

49.6

Weight (kDa)

8.19

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
AasI GACNNNNNNGTC 1 cut(s) 1253
Acc36I ACCTGC 2 cut(s) 236, 324
Acc65I GGTACC 1 cut(s) 139
AccB1I GGYRCC 2 cut(s) 139, 725
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 1 cut(s) 1202
AclWI GGATC 3 cut(s) 1113, 1129, 1142
AcoI YGGCCR 2 cut(s) 430, 841
AcsI RAATTY 5 cut(s) 738, 802, 918, 1073, 1099
AcuI CTGAAG 1 cut(s) 847
AfaI GTAC 2 cut(s) 141, 849
AfiI CCNNNNNNNGG 2 cut(s) 234, 1145
AgeI ACCGGT 2 cut(s) 85, 464
AgsI TTSAA 5 cut(s) 386, 607, 930, 1041, 1178
AjnI CCWGG 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AloI GAACNNNNNNTCC 2 cut(s) 821, 853
Alw21I GWGCWC 5 cut(s) 157, 312, 899, 1243, 1282
Alw26I GTCTC 3 cut(s) 76, 305, 1239
AlwI GGATC 3 cut(s) 1113, 1129, 1142
Ama87I CYCGRG 3 cut(s) 492, 590, 1242
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 5 cut(s) 337, 430, 554, 841, 1328
ApeKI GCWGC 2 cut(s) 1218, 1292
ApoI RAATTY 5 cut(s) 738, 802, 918, 1073, 1099
AsiGI ACCGGT 2 cut(s) 85, 464
Asp700I GAANNNNTTC 1 cut(s) 833
Asp718I GGTACC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 338, 554, 1058
AsuC2I CCSGG 2 cut(s) 481, 754
AsuHPI GGTGA 2 cut(s) 469, 926
AvaI CYCGRG 3 cut(s) 492, 590, 1242
AvaII GGWCC 1 cut(s) 1058
BaeGI GKGCMC 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 25, 58
BamHI GGATCC 1 cut(s) 1134
BanI GGYRCC 2 cut(s) 139, 725
BanII GRGCYC 4 cut(s) 157, 312, 1243, 1282
BauI CACGAG 1 cut(s) 1236
Bbv12I GWGCWC 5 cut(s) 157, 312, 899, 1243, 1282
BbvI GCAGC 2 cut(s) 1230, 1304
BccI CCATC 3 cut(s) 529, 787, 818
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 4 cut(s) 483, 517, 571, 605
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 2 cut(s) 53, 138
BclI TGATCA 1 cut(s) 666
BcnI CCSGG 2 cut(s) 481, 754
BcoDI GTCTC 3 cut(s) 76, 305, 1239
BfaI CTAG 2 cut(s) 821, 959
BfmI CTRYAG 2 cut(s) 77, 1290
BfuAI ACCTGC 2 cut(s) 236, 324
BfuI GTATCC 2 cut(s) 53, 138
BglII AGATCT 1 cut(s) 858
BisI GCNGC 2 cut(s) 1219, 1293
BlsI GCNGC 2 cut(s) 1220, 1294
Bme1390I CCNGG 3 cut(s) 252, 481, 754
Bme18I GGWCC 1 cut(s) 1058
BmeT110I CYCGRG 3 cut(s) 492, 590, 1242
BmgT120I GGNCC 3 cut(s) 338, 554, 1058
BmiI GGNNCC 5 cut(s) 141, 240, 727, 1091, 1136
BmrFI CCNGG 3 cut(s) 252, 481, 754
BpmI CTGGAG 3 cut(s) 273, 395, 1296
BpuEI CTTGAG 1 cut(s) 782
BpuMI CCSGG 2 cut(s) 481, 754
BsaI GGTCTC 2 cut(s) 76, 1239
BsaWI WCCGGW 3 cut(s) 85, 464, 562
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 1145
Bse118I RCCGGY 2 cut(s) 85, 464
Bse1I ACTGG 1 cut(s) 1279
Bse3DI GCAATG 3 cut(s) 199, 710, 1302
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 779
BseLI CCNNNNNNNGG 2 cut(s) 234, 1145
BseMI GCAATG 3 cut(s) 199, 710, 1302
BseMII CTCAG 5 cut(s) 8, 51, 237, 318, 411
BseNI ACTGG 1 cut(s) 1279
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 2 cut(s) 1230, 1304
BseYI CCCAGC 1 cut(s) 1138
BsgI GTGCAG 1 cut(s) 1237
BshFI GGCC 5 cut(s) 339, 432, 556, 843, 1330
BshNI GGYRCC 2 cut(s) 139, 725
BshTI ACCGGT 2 cut(s) 85, 464
BsiHKAI GWGCWC 5 cut(s) 157, 312, 899, 1243, 1282
BsiHKCI CYCGRG 3 cut(s) 492, 590, 1242
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 234, 1145
BsmAI GTCTC 3 cut(s) 76, 305, 1239
BsmFI GGGAC 1 cut(s) 640
BsmI GAATGC 1 cut(s) 1171
BsnI GGCC 5 cut(s) 339, 432, 556, 843, 1330
Bso31I GGTCTC 2 cut(s) 76, 1239
BsoBI CYCGRG 3 cut(s) 492, 590, 1242
Bsp1286I GDGCHC 6 cut(s) 157, 275, 312, 899, 1243, 1282
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
BspACI CCGC 1 cut(s) 1202
BspANI GGCC 5 cut(s) 339, 432, 556, 843, 1330
BspCNI CTCAG 5 cut(s) 9, 52, 238, 317, 412
BspEI TCCGGA 1 cut(s) 562
BspLI GGNNCC 5 cut(s) 141, 240, 727, 1091, 1136
BspMAI CTGCAG 1 cut(s) 1294
BspMI ACCTGC 2 cut(s) 236, 324
BspPI GGATC 3 cut(s) 1113, 1129, 1142
BspT107I GGYRCC 2 cut(s) 139, 725
BspTNI GGTCTC 2 cut(s) 76, 1239
BsrDI GCAATG 3 cut(s) 199, 710, 1302
BsrFI RCCGGY 2 cut(s) 85, 464
BsrI ACTGG 1 cut(s) 1279
BssAI RCCGGY 2 cut(s) 85, 464
BssMI GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
BssSI CACGAG 1 cut(s) 1236
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 7 cut(s) 17, 60, 123, 246, 304, 420, 878
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 1 cut(s) 779
BstKTI GATC 7 cut(s) 136, 151, 364, 669, 861, 1108, 1137
BstMAI GTCTC 3 cut(s) 76, 305, 1239
BstMBI GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 250, 479, 752
BstSFI CTRYAG 2 cut(s) 77, 1290
BstSLI GKGCMC 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 1230, 1304
BstX2I RGATCY 3 cut(s) 858, 1105, 1134
BstYI RGATCY 3 cut(s) 858, 1105, 1134
BsuI GTATCC 2 cut(s) 53, 138
BsuRI GGCC 5 cut(s) 339, 432, 556, 843, 1330
BtsCI GGATG 1 cut(s) 779
BtsIMutI CAGTG 2 cut(s) 57, 1272
BveI ACCTGC 2 cut(s) 236, 324
Cac8I GCNNGC 1 cut(s) 157
Cfr10I RCCGGY 2 cut(s) 85, 464
Cfr13I GGNCC 3 cut(s) 338, 554, 1058
Csp6I GTAC 2 cut(s) 140, 848
CspAI ACCGGT 2 cut(s) 85, 464
CspCI CAANNNNNGTGG 4 cut(s) 892, 927, 1050, 1085
CviAII CATG 3 cut(s) 217, 892, 1084
CviQI GTAC 2 cut(s) 140, 848
DdeI CTNAG 7 cut(s) 17, 60, 123, 246, 304, 420, 878
DpnI GATC 7 cut(s) 135, 150, 363, 668, 860, 1107, 1136
DpnII GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
DraI TTTAAA 1 cut(s) 807
DrdI GACNNNNNNGTC 1 cut(s) 1253
DseDI GACNNNNNNGTC 1 cut(s) 1253
EaeI YGGCCR 2 cut(s) 430, 841
EciI GGCGGA 1 cut(s) 1217
Ecl136II GAGCTC 4 cut(s) 155, 310, 1241, 1280
Eco24I GRGCYC 4 cut(s) 157, 312, 1243, 1282
Eco31I GGTCTC 2 cut(s) 76, 1239
Eco47I GGWCC 1 cut(s) 1058
Eco53kI GAGCTC 4 cut(s) 155, 310, 1241, 1280
Eco57I CTGAAG 1 cut(s) 847
Eco88I CYCGRG 3 cut(s) 492, 590, 1242
Eco91I GGTNACC 1 cut(s) 467
EcoICRI GAGCTC 4 cut(s) 155, 310, 1241, 1280
EcoO65I GGTNACC 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 1073
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 4 cut(s) 157, 312, 1243, 1282
FaeI CATG 3 cut(s) 220, 895, 1087
FaqI GGGAC 1 cut(s) 640
FatI CATG 3 cut(s) 216, 891, 1083
FauNDI CATATG 1 cut(s) 409
FbaI TGATCA 1 cut(s) 666
Fnu4HI GCNGC 2 cut(s) 1219, 1293
FokI GGATG 1 cut(s) 766
FriOI GRGCYC 4 cut(s) 157, 312, 1243, 1282
Fsp4HI GCNGC 2 cut(s) 1219, 1293
FspBI CTAG 2 cut(s) 821, 959
GluI GCNGC 2 cut(s) 1219, 1293
GsaI CCCAGC 1 cut(s) 1142
GsuI CTGGAG 3 cut(s) 273, 395, 1296
HaeIII GGCC 5 cut(s) 339, 432, 556, 843, 1330
Hin1II CATG 3 cut(s) 220, 895, 1087
HphI GGTGA 2 cut(s) 469, 926
Hpy166II GTNNAC 3 cut(s) 259, 869, 884
Hpy188I TCNGA 9 cut(s) 18, 61, 74, 165, 307, 534, 762, 951, 1225
Hpy188III TCNNGA 9 cut(s) 131, 374, 494, 563, 670, 699, 768, 799, 1244
Hpy8I GTNNAC 3 cut(s) 259, 869, 884
HpyAV CCTTC 3 cut(s) 435, 507, 1172
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 2 cut(s) 524, 953
HpyCH4V TGCA 7 cut(s) 174, 267, 504, 582, 715, 1218, 1292
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 7 cut(s) 17, 60, 123, 246, 304, 420, 878
HpySE526I ACGT 2 cut(s) 524, 953
Hsp92II CATG 3 cut(s) 220, 895, 1087
Kpn2I TCCGGA 1 cut(s) 562
KpnI GGTACC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 666
Kzo9I GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
LmnI GCTCC 2 cut(s) 1089, 1277
Lsp1109I GCAGC 2 cut(s) 1230, 1304
MaeI CTAG 2 cut(s) 821, 959
MaeII ACGT 2 cut(s) 524, 953
MaeIII GTNAC 2 cut(s) 460, 467
MalI GATC 7 cut(s) 135, 150, 363, 668, 860, 1107, 1136
MboI GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
MboII GAAGA 3 cut(s) 356, 619, 853
MfeI CAATTG 1 cut(s) 872
MflI RGATCY 3 cut(s) 858, 1105, 1134
MhlI GDGCHC 6 cut(s) 157, 275, 312, 899, 1243, 1282
MlyI GAGTC 3 cut(s) 264, 433, 1263
MmeI TCCRAC 1 cut(s) 1246
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 833
MseI TTAA 4 cut(s) 210, 648, 806, 1032
MslI CAYNNNNRTG 1 cut(s) 1082
MspR9I CCNGG 3 cut(s) 252, 481, 754
MunI CAATTG 1 cut(s) 872
Mva1269I GAATGC 1 cut(s) 1171
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 316
NciI CCSGG 2 cut(s) 481, 754
NdeI CATATG 1 cut(s) 409
NdeII GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
NlaIII CATG 3 cut(s) 220, 895, 1087
NlaIV GGNNCC 5 cut(s) 141, 240, 727, 1091, 1136
NspI RCATGY 1 cut(s) 220
PaeR7I CTCGAG 2 cut(s) 492, 1242
PaqCI CACCTGC 1 cut(s) 236
PctI GAATGC 1 cut(s) 1171
PdmI GAANNNNTTC 1 cut(s) 833
PfoI TCCNGGA 1 cut(s) 752
PinAI ACCGGT 2 cut(s) 85, 464
PkrI GCNGC 2 cut(s) 1220, 1294
PleI GAGTC 3 cut(s) 263, 432, 1263
PpsI GAGTC 3 cut(s) 263, 432, 1263
Psp124BI GAGCTC 4 cut(s) 157, 312, 1243, 1282
Psp6I CCWGG 1 cut(s) 250
PspEI GGTNACC 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 1138
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 5 cut(s) 141, 240, 727, 1091, 1136
PspPI GGNCC 3 cut(s) 338, 554, 1058
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
PstI CTGCAG 1 cut(s) 1294
PsuI RGATCY 3 cut(s) 858, 1105, 1134
RsaI GTAC 2 cut(s) 141, 849
RsaNI GTAC 2 cut(s) 140, 848
RseI CAYNNNNRTG 1 cut(s) 1082
SacI GAGCTC 4 cut(s) 157, 312, 1243, 1282
SaqAI TTAA 4 cut(s) 210, 648, 806, 1032
SatI GCNGC 2 cut(s) 1219, 1293
Sau3AI GATC 7 cut(s) 133, 148, 361, 666, 858, 1105, 1134
Sau96I GGNCC 3 cut(s) 338, 554, 1058
SchI GAGTC 3 cut(s) 264, 433, 1263
ScrFI CCNGG 3 cut(s) 252, 481, 754
SduI GDGCHC 6 cut(s) 157, 275, 312, 899, 1243, 1282
SfcI CTRYAG 2 cut(s) 77, 1290
Sfr274I CTCGAG 2 cut(s) 492, 1242
SinI GGWCC 1 cut(s) 1058
SlaI CTCGAG 2 cut(s) 492, 1242
SmiMI CAYNNNNRTG 1 cut(s) 1082
SmlI CTYRAG 3 cut(s) 492, 797, 1242
SmoI CTYRAG 3 cut(s) 492, 797, 1242
SsiI CCGC 1 cut(s) 1202
SspI AATATT 1 cut(s) 907
SspMI CTAG 2 cut(s) 821, 959
SstI GAGCTC 4 cut(s) 157, 312, 1243, 1282
StyD4I CCNGG 3 cut(s) 250, 479, 752
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 2 cut(s) 527, 956
TaqI TCGA 7 cut(s) 151, 222, 456, 493, 735, 1163, 1243
Tru1I TTAA 4 cut(s) 210, 648, 806, 1032
Tru9I TTAA 4 cut(s) 210, 648, 806, 1032
TscAI CASTG 2 cut(s) 57, 1279
TseI GCWGC 2 cut(s) 1218, 1292
TspDTI ATGAA 8 cut(s) 13, 56, 343, 426, 1066, 1114, 1313, 1335
TspRI CASTG 2 cut(s) 57, 1279
VpaK11BI GGWCC 1 cut(s) 1058
XapI RAATTY 5 cut(s) 738, 802, 918, 1073, 1099
XceI RCATGY 1 cut(s) 220
XhoI CTCGAG 2 cut(s) 492, 1242
XmnI GAANNNNTTC 1 cut(s) 833
XspI CTAG 2 cut(s) 821, 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.