RchiOBHm_Chr2g0119111

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
31395417 .. 31399430
4014 bp
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UTR
Exon/CDS
Intron
PRQ49186

Sequence Viewer

Length: 276 bp
ATGTCGAAACCAGTGGTAGAACTAGAGGAAGAAGCTGTGAACATAGTAAGTTGGGTGAGAAAAACCGCATCACAAATTCCTCAGCAATCCACTACATCATCTGTAGTTAAAGTTGTGGACTCCAGGCTCAGTAGGTTCCCATTTGCAAGTGTCGAGCATGTGTTCAAGATAGCAATGATGTGTATCGAGAATCACAGCTCTGCAAGACCTACAATGAGGGAAGTTGTCTACTTCCACACTAATCTTCCTTGTTCTGCTCCAGGCACAAACCCTTAG

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

7.85

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 66
AcsI RAATTY 1 cut(s) 75
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 2 cut(s) 122, 259
AluBI AGCT 2 cut(s) 35, 198
AluI AGCT 2 cut(s) 35, 198
ApoI RAATTY 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 124, 261
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 102
Bme1390I CCNGG 2 cut(s) 124, 261
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 2 cut(s) 124, 261
BmsI GCATC 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 106, 243
Bpu10I CCTNAGC 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 2 cut(s) 124, 261
BseJI GATNNNNATC 1 cut(s) 182
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 95, 142
BseNI ACTGG 1 cut(s) 11
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 94, 141
BspLI GGNNCC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 180
BsrI ACTGG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 124, 261
BstDEI CTNAG 3 cut(s) 81, 128, 273
BstNI CCWGG 2 cut(s) 124, 261
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 2 cut(s) 122, 259
BstSFI CTRYAG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 18
CviAII CATG 1 cut(s) 158
CviJI RGCY 3 cut(s) 35, 127, 198
CviKI_1 RGCY 3 cut(s) 35, 127, 198
DdeI CTNAG 3 cut(s) 81, 128, 273
EcoRII CCWGG 2 cut(s) 122, 259
FaeI CATG 1 cut(s) 161
FaiI YATR 2 cut(s) 44, 159
FatI CATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 228
FspBI CTAG 1 cut(s) 23
GsuI CTGGAG 2 cut(s) 106, 243
Hin1II CATG 1 cut(s) 161
HinfI GANTC 2 cut(s) 119, 190
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 40, 118, 229
Hpy188III TCNNGA 2 cut(s) 166, 187
Hpy8I GTNNAC 3 cut(s) 40, 118, 229
HpyCH4V TGCA 2 cut(s) 146, 203
HpyF3I CTNAG 3 cut(s) 81, 128, 273
Hsp92II CATG 1 cut(s) 161
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 24, 109, 136, 246
LweI GCATC 1 cut(s) 77
MaeI CTAG 1 cut(s) 23
MboII GAAGA 2 cut(s) 41, 236
MluCI AATT 1 cut(s) 75
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 19, 90, 210
MseI TTAA 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 124, 261
MvaI CCWGG 2 cut(s) 124, 261
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 137
NspI RCATGY 1 cut(s) 161
PfeI GAWTC 1 cut(s) 190
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 122, 259
PspGI CCWGG 2 cut(s) 122, 259
PspN4I GGNNCC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 108
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 124, 261
SetI ASST 4 cut(s) 37, 137, 200, 211
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 122, 259
TaqI TCGA 3 cut(s) 5, 153, 186
TasI AATT 1 cut(s) 75
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.