Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001653.1

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Reverse (-)

50855 .. 51532

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001653.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggcgagcctcacaactttggatctctcctataacaatttcattggtaggatcccaaccggaggtcagtttgttgagttcgaatttgatggaaatccacatttgcgttcgccgagaaatgtttcagccatcatcgctggactcactgtaggctctggagctctgctagctatgctactcatgttgcttatcgtacgtgtaaggatcagggtttataggaagagaaagatcagagagattgagaaaagtggctcttggaagctcacagttttccaagtacagattgatctcaatatagaggacattctcctgtgtctagatgcagagaacattataggcaggggtggtgctggagttgtctactgggggacaatgccaaacggtgattatgtggccatcaaaaggttgcagagggatcatggattttcggctgaaataaaaactttgggacaaatcaagcaccggaatatagtgtcattgttggggtacatgtcgaaaaaggacactaatttgttgatgtatgagtacatgcctaatggtagcttgggagaactgttgcatgggtctaatggagggcatttggagtgggaaatgagatacaagattgccgtggatgcagcaatgggattgtgttatctccaccatgattactcgcctctgattatacacgggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

25.22

Weight (kDa)

8.82

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AclWI	GGATC	5 cut(s)	30, 46, 59, 212, 423
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	4 cut(s)	195, 279, 488, 527
AfiI	CCNNNNNNNGG	2 cut(s)	62, 402
AflIII	ACRYGT	2 cut(s)	196, 489
AluBI	AGCT	4 cut(s)	161, 170, 262, 543
AluI	AGCT	4 cut(s)	161, 170, 262, 543
Alw21I	GWGCWC	1 cut(s)	163
AlwI	GGATC	5 cut(s)	30, 46, 59, 212, 423
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	81
AsuNHI	GCTAGC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	3 cut(s)	83, 137, 404
BceAI	ACGGC	1 cut(s)	593
BfaI	CTAG	2 cut(s)	167, 317
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
BmiI	GGNNCC	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	310, 604
BmtI	GCTAGC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	373
BpmI	CTGGAG	2 cut(s)	177, 372
Bpu14I	TTCGAA	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	609
BsaWI	WCCGGW	2 cut(s)	59, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 402
Bse1I	ACTGG	1 cut(s)	368
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	609
BseGI	GGATG	2 cut(s)	619, 678
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	62, 402
BseMI	GCAATG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	629
BshFI	GGCC	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	60, 463
BsiWI	CGTACG	1 cut(s)	193
BslFI	GGGAC	2 cut(s)	382, 462
BslI	CCNNNNNNNGG	2 cut(s)	62, 402
BsmFI	GGGAC	2 cut(s)	382, 462
BsnI	GGCC	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	170
BspPI	GGATC	5 cut(s)	30, 46, 59, 212, 423
BspT104I	TTCGAA	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	609
BssMI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
Bst4CI	ACNGT	4 cut(s)	148, 268, 383, 555
Bst6I	CTCTTC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	7, 168
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	619, 678
BstKTI	GATC	6 cut(s)	25, 54, 207, 231, 289, 418
BstMBI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 167, 172, 614
BstNSI	RCATGY	2 cut(s)	493, 532
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	629
BstX2I	RGATCY	2 cut(s)	22, 51
BstYI	RGATCY	2 cut(s)	22, 51
BsuRI	GGCC	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	609
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	619, 678
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	7, 168
Csp6I	GTAC	4 cut(s)	194, 278, 487, 526
CviAII	CATG	6 cut(s)	181, 419, 490, 529, 560, 644
CviQI	GTAC	4 cut(s)	194, 278, 487, 526
DpnI	GATC	6 cut(s)	24, 53, 206, 230, 288, 417
DpnII	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	6 cut(s)	184, 422, 493, 532, 563, 647
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FaqI	GGGAC	2 cut(s)	382, 462
FatI	CATG	6 cut(s)	180, 418, 489, 528, 559, 643
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	1 cut(s)	626
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	2 cut(s)	167, 317
GluI	GCNGC	1 cut(s)	618
GsuI	CTGGAG	2 cut(s)	177, 372
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	2 cut(s)	60, 463
Hin1II	CATG	6 cut(s)	184, 422, 493, 532, 563, 647
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	60, 463
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	2 cut(s)	233, 660
Hpy188III	TCNNGA	2 cut(s)	156, 317
Hpy8I	GTNNAC	1 cut(s)	361
HpyCH4III	ACNGT	4 cut(s)	148, 268, 383, 555
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	323, 409, 559, 617
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 167, 172, 614
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	6 cut(s)	184, 422, 493, 532, 563, 647
Kzo9I	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	9 cut(s)	73, 123, 141, 193, 323, 325, 336, 349, 476
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	2 cut(s)	310, 604
MaeI	CTAG	2 cut(s)	167, 317
MaeII	ACGT	1 cut(s)	196
MalI	GATC	6 cut(s)	24, 53, 206, 230, 288, 417
MboI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	2 cut(s)	22, 51
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	3 cut(s)	37, 83, 508
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	20, 56, 292, 405, 566, 666
Mox20I	TGGCCA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	121
MscI	TGGCCA	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	2 cut(s)	60, 463
MwoI	GCNNNNNNNGC	4 cut(s)	134, 167, 172, 614
NdeII	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
NheI	GCTAGC	1 cut(s)	166
NlaIII	CATG	6 cut(s)	184, 422, 493, 532, 563, 647
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	138
NspI	RCATGY	2 cut(s)	493, 532
NspV	TTCGAA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	121
Pfl23II	CGTACG	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	619
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Ppu21I	YACGTR	1 cut(s)	197
PscI	ACATGT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	163
PspLI	CGTACG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	22, 51
RsaI	GTAC	4 cut(s)	195, 279, 488, 527
RsaNI	GTAC	4 cut(s)	194, 278, 487, 526
SacI	GAGCTC	1 cut(s)	163
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	6 cut(s)	22, 51, 204, 228, 286, 415
SchI	GAGTC	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	67, 163, 172, 199, 264, 407, 545
SfaNI	GCATC	2 cut(s)	310, 604
SfcI	CTRYAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	81
Sse9I	AATT	3 cut(s)	37, 83, 508
SspMI	CTAG	2 cut(s)	167, 317
SstI	GAGCTC	1 cut(s)	163
TaaI	ACNGT	4 cut(s)	148, 268, 383, 555
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	81, 494
TasI	AATT	3 cut(s)	37, 83, 508
TatI	WGTACW	2 cut(s)	277, 525
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	83
XbaI	TCTAGA	1 cut(s)	316
XceI	RCATGY	2 cut(s)	493, 532
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	2 cut(s)	167, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.