Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000461

Physical Location & Seq

Genomic Coordinates Forward (+)

31336032 .. 31336858

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49180

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTCGAACAAGGACACGAATTTGTTGTTGTACGAGTACATGCCTAATGGTAGCTTGCGACAACTGTTGCATGGGTCTAATGGAGAGCATTTGGAGTGGGAAATGAGATACAAGATTGCCGTGGAAGCTGCAATGGGATTGTGTTATCTCCACCATGCTTGCTCACCTTTGATTATACACAGGGATGTAAAGTCCGATAACATCTTGCTGGACTCTAATTTTGATGCTCGTATTGCTGATTTCGGGCTTGCCAAGTACTTTCAAGGACCAACAGATTTCATGTCTTCGTTTGCTGGTACGTTTGGTTATATTGCCCCAGAGTACGGTCGCACAATGAAAGTGGATGAGAAAATCGATGTGTACAGCTTTGGTGTGGTTCTACTGGAACTAGTAACAGGGAGGACACCAGTGGTCGAACTAGTTGAAGAAGCTGTGAACTTAGGAAGTTGGGTAAGGAAAACCACATCACAAATCCCTCAGCCATCCGATGTATCACCTGTACTTGCAGTTGTGGACTCCAGGCTCAGTGGATTCCCATTGGCAGGTGTTGAGCACATGTTCCAAATAGCAATGATGTGCGTCGAGAATCATAGCTCTGTAAGACCTACGATGAGGGAAGTTGTCTACTTCCTCACTAACCCTCCTCGTTCTGCTCCAGGCATGAGAAACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

224

Amino Acids

25.05

Weight (kDa)

5.62

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 208	3.2e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 208	2.3e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75820
fragaria_vesca	FvH4_2g38230 FvH4_2g38230
malus_domestica	MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica	Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis	pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis	RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata	RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora	Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa	Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha	Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana	Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	624
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	7 cut(s)	32, 38, 257, 298, 323, 362, 501
AfiI	CCNNNNNNNGG	2 cut(s)	323, 542
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	2 cut(s)	263, 425
AhlI	ACTAGT	2 cut(s)	388, 418
AjnI	CCWGG	2 cut(s)	518, 655
AluBI	AGCT	5 cut(s)	54, 128, 366, 431, 594
AluI	AGCT	5 cut(s)	54, 128, 366, 431, 594
Alw21I	GWGCWC	1 cut(s)	555
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	19
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	156, 486
AvaII	GGWCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	555
BbvCI	CCTCAGC	1 cut(s)	477
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	520, 657
BcuI	ACTAGT	2 cut(s)	388, 418
BfaI	CTAG	3 cut(s)	389, 419, 673
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	2 cut(s)	520, 657
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	520, 657
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	2 cut(s)	502, 639
Bpu10I	CCTNAGC	1 cut(s)	477
Bsa29I	ATCGAT	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	323, 542
Bse1I	ACTGG	2 cut(s)	387, 407
Bse3DI	GCAATG	2 cut(s)	138, 576
BseBI	CCWGG	2 cut(s)	520, 657
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	190, 349, 482
BseLI	CCNNNNNNNGG	2 cut(s)	323, 542
BseMI	GCAATG	2 cut(s)	138, 576
BseMII	CTCAG	2 cut(s)	491, 538
BseNI	ACTGG	2 cut(s)	387, 407
BseRI	GAGGAG	1 cut(s)	633
BseXI	GCAGC	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	354
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	323, 542
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp1407I	TGTACA	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	490, 537
BspDI	ATCGAT	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	533
BsrDI	GCAATG	2 cut(s)	138, 576
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	387, 407
BssECI	CCNNGG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	520, 657
Bst4CI	ACNGT	2 cut(s)	66, 326
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	56, 160, 249
BstDEI	CTNAG	3 cut(s)	439, 477, 524
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	190, 349, 482
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 233
BstNI	CCWGG	2 cut(s)	520, 657
BstNSI	RCATGY	2 cut(s)	43, 559
BstSCI	CCNGG	2 cut(s)	518, 655
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	354
BsuTUI	ATCGAT	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	3 cut(s)	190, 349, 482
BtsIMutI	CAGTG	2 cut(s)	414, 532
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	56, 160, 249
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	354
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	7 cut(s)	31, 37, 256, 297, 322, 361, 500
CspCI	CAANNNNNGTGG	4 cut(s)	140, 175, 321, 356
CviAII	CATG	6 cut(s)	40, 71, 155, 280, 556, 661
CviJI	RGCY	8 cut(s)	54, 128, 247, 366, 431, 481, 523, 594
CviKI_1	RGCY	8 cut(s)	54, 128, 247, 366, 431, 481, 523, 594
CviQI	GTAC	7 cut(s)	31, 37, 256, 297, 322, 361, 500
DdeI	CTNAG	3 cut(s)	439, 477, 524
Eco47I	GGWCC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	518, 655
FaeI	CATG	6 cut(s)	43, 74, 158, 283, 559, 664
FaiI	YATR	9 cut(s)	41, 72, 156, 176, 281, 309, 557, 591, 662
FatI	CATG	6 cut(s)	39, 70, 154, 279, 555, 660
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	3 cut(s)	197, 356, 469
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	3 cut(s)	389, 419, 673
GluI	GCNGC	1 cut(s)	129
GsuI	CTGGAG	2 cut(s)	502, 639
HgaI	GACGC	1 cut(s)	568
Hin1II	CATG	6 cut(s)	43, 74, 158, 283, 559, 664
HinfI	GANTC	4 cut(s)	212, 515, 531, 586
HphI	GGTGA	2 cut(s)	156, 486
Hpy166II	GTNNAC	4 cut(s)	361, 436, 514, 625
Hpy188I	TCNGA	2 cut(s)	196, 487
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	4 cut(s)	361, 436, 514, 625
Hpy99I	CGWCG	1 cut(s)	584
HpyCH4III	ACNGT	2 cut(s)	66, 326
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	70, 131, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 233
HpyF3I	CTNAG	3 cut(s)	439, 477, 524
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	43, 74, 158, 283, 559, 664
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	3 cut(s)	389, 419, 673
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	391
MboII	GAAGA	2 cut(s)	276, 437
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	2 cut(s)	19, 217
MlyI	GAGTC	2 cut(s)	206, 509
MnlI	CCTC	6 cut(s)	393, 486, 606, 641, 651, 654
MslI	CAYNNNNRTG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	520, 657
MvaI	CCWGG	2 cut(s)	520, 657
MwoI	GCNNNNNNNGC	2 cut(s)	125, 233
NlaIII	CATG	6 cut(s)	43, 74, 158, 283, 559, 664
NspI	RCATGY	2 cut(s)	43, 559
PaqCI	CACCTGC	1 cut(s)	533
PciI	ACATGT	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	531, 586
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	2 cut(s)	206, 509
PpsI	GAGTC	2 cut(s)	206, 509
PscI	ACATGT	1 cut(s)	555
Psp6I	CCWGG	2 cut(s)	518, 655
PspGI	CCWGG	2 cut(s)	518, 655
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	7 cut(s)	32, 38, 257, 298, 323, 362, 501
RsaNI	GTAC	7 cut(s)	31, 37, 256, 297, 322, 361, 500
RseI	CAYNNNNRTG	1 cut(s)	183
SatI	GCNGC	1 cut(s)	129
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	2 cut(s)	206, 509
ScrFI	CCNGG	2 cut(s)	520, 657
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	183
SpeI	ACTAGT	2 cut(s)	388, 418
Sse9I	AATT	2 cut(s)	19, 217
SspMI	CTAG	3 cut(s)	389, 419, 673
StyD4I	CCNGG	2 cut(s)	518, 655
TaaI	ACNGT	2 cut(s)	66, 326
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	4 cut(s)	5, 354, 414, 582
TasI	AATT	2 cut(s)	19, 217
TatI	WGTACW	4 cut(s)	36, 255, 360, 499
TfiI	GAWTC	2 cut(s)	531, 586
TscAI	CASTG	2 cut(s)	414, 532
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	268, 350
TspRI	CASTG	2 cut(s)	414, 532
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	2 cut(s)	43, 559
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	3 cut(s)	389, 419, 673
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.