RchiOBHm_Chr3g0478281

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000461
Physical Location & Seq
Reverse (-)
24102185 .. 24103103
919 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44349

Sequence Viewer

Length: 399 bp
ATGCAACTGGTTGCAATGAACACAGTAAAGCTCCTCCTTGTACCGGGTAGAAATTTGTGGATAGAATTGATGGCTCCAGTTTTCTCTCAAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGGGTAATCGAATGAAGAAAATTGGTGTCGTAGATGCTGAGTACATAATCCATTATGGCCGCCCTACTTTGGGAGGTCCGGACGAAAATGAGGCGAAAATTGTTAGCCTAGCTTTGTATTCAGCTAAATTACCTCAGTCTATTGCAAAGGACCATAGAGTTGATGTGAGGAGGGAATCCTACAATGAAATGAAGATCTTCAGAAGAAAATGGGAGCGTGCTACTAAGAACGATGAGTGTTGGATTGATCCATACCCTGTTAACAGTAGCCGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

132

Amino Acids

15.42

Weight (kDa)

9.48

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 18 - 42 3.8e-09 Protein of unknown function (DUF707)
DUF707 PF05212 41 - 116 3.3e-12 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 181
AclWI GGATC 2 cut(s) 112, 362
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 304
AfaI GTAC 2 cut(s) 42, 164
AfiI CCNNNNNNNGG 3 cut(s) 43, 190, 191
AjnI CCWGG 2 cut(s) 95, 120
AluBI AGCT 4 cut(s) 31, 92, 233, 245
AluI AGCT 4 cut(s) 31, 92, 233, 245
AlwI GGATC 2 cut(s) 112, 362
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 197, 271
AsuC2I CCSGG 1 cut(s) 45
AvaII GGWCC 2 cut(s) 197, 271
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 2 cut(s) 97, 122
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 230
BglII AGATCT 1 cut(s) 315
BisI GCNGC 2 cut(s) 93, 181
BlsI GCNGC 2 cut(s) 94, 182
Bme1390I CCNGG 3 cut(s) 45, 97, 122
Bme18I GGWCC 2 cut(s) 197, 271
BmgT120I GGNCC 2 cut(s) 197, 271
BmiI GGNNCC 1 cut(s) 75
BmrFI CCNGG 3 cut(s) 45, 97, 122
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 190, 191
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 12, 77
Bse3DI GCAATG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 2 cut(s) 97, 122
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 3 cut(s) 43, 190, 191
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 150, 269
BseNI ACTGG 2 cut(s) 12, 77
BseRI GAGGAG 2 cut(s) 23, 304
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 3 cut(s) 44, 200, 391
BslI CCNNNNNNNGG 3 cut(s) 43, 190, 191
BsnI GGCC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 117, 315, 367
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 151, 268
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 112, 362
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 390
BsrI ACTGG 2 cut(s) 12, 77
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 3 cut(s) 117, 315, 367
Bst2UI CCWGG 2 cut(s) 97, 122
Bst4CI ACNGT 2 cut(s) 25, 386
BstC8I GCNNGC 2 cut(s) 339, 392
BstDEI CTNAG 3 cut(s) 159, 255, 345
BstKTI GATC 3 cut(s) 120, 318, 370
BstMBI GATC 3 cut(s) 117, 315, 367
BstNI CCWGG 2 cut(s) 97, 122
BstSCI CCNGG 3 cut(s) 43, 95, 120
BstV1I GCAGC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 339, 392
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 197, 271
Csp6I GTAC 2 cut(s) 41, 163
CviJI RGCY 8 cut(s) 31, 74, 92, 180, 228, 233, 245, 390
CviKI_1 RGCY 8 cut(s) 31, 74, 92, 180, 228, 233, 245, 390
CviQI GTAC 2 cut(s) 41, 163
DdeI CTNAG 3 cut(s) 159, 255, 345
DpnI GATC 3 cut(s) 119, 317, 369
DpnII GATC 3 cut(s) 117, 315, 367
EaeI YGGCCR 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 197, 271
Eco57I CTGAAG 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 95, 120
FaiI YATR 7 cut(s) 109, 114, 116, 167, 177, 276, 373
Fnu4HI GCNGC 2 cut(s) 93, 181
Fsp4HI GCNGC 2 cut(s) 93, 181
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 93, 181
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 180
HapII CCGG 3 cut(s) 44, 200, 391
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 1 cut(s) 296
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 44, 200, 391
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 382
HpyCH4III ACNGT 2 cut(s) 25, 386
HpyCH4V TGCA 3 cut(s) 4, 14, 266
HpyF3I CTNAG 3 cut(s) 159, 255, 345
Kpn2I TCCGGA 1 cut(s) 199
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 117, 315, 367
LmnI GCTCC 3 cut(s) 36, 79, 334
LpnPI CCDG 8 cut(s) 57, 82, 90, 107, 109, 134, 213, 390
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 230
MalI GATC 3 cut(s) 119, 317, 369
MboI GATC 3 cut(s) 117, 315, 367
MboII GAAGA 4 cut(s) 148, 310, 325, 336
MflI RGATCY 1 cut(s) 315
MluCI AATT 5 cut(s) 52, 65, 141, 219, 248
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 6 cut(s) 44, 188, 205, 264, 282, 285
MroI TCCGGA 1 cut(s) 199
MroNI GCCGGC 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 381
MspI CCGG 3 cut(s) 44, 200, 391
MspR9I CCNGG 3 cut(s) 45, 97, 122
MvaI CCWGG 2 cut(s) 97, 122
NaeI GCCGGC 1 cut(s) 392
NciI CCSGG 1 cut(s) 45
NdeII GATC 3 cut(s) 117, 315, 367
NgoMIV GCCGGC 1 cut(s) 390
NlaIV GGNNCC 1 cut(s) 75
PdiI GCCGGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 94, 182
Psp6I CCWGG 2 cut(s) 95, 120
PspGI CCWGG 2 cut(s) 95, 120
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 197, 271
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 2 cut(s) 42, 164
RsaNI GTAC 2 cut(s) 41, 163
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 2 cut(s) 93, 181
Sau3AI GATC 3 cut(s) 117, 315, 367
Sau96I GGNCC 2 cut(s) 197, 271
ScrFI CCNGG 3 cut(s) 45, 97, 122
SetI ASST 6 cut(s) 33, 94, 199, 235, 247, 256
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 2 cut(s) 197, 271
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 5 cut(s) 52, 65, 141, 219, 248
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 43, 95, 120
TaaI ACNGT 2 cut(s) 25, 386
TaqI TCGA 1 cut(s) 130
TasI AATT 5 cut(s) 52, 65, 141, 219, 248
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 4 cut(s) 32, 149, 321, 326
VpaK11BI GGWCC 2 cut(s) 197, 271
XapI RAATTY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.