Rmu_co8277963.1_g000001

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8277963.1
OG0000461
Physical Location & Seq
Forward (+)
1 .. 772
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8277963.1_g000001.1.cds

Sequence Viewer

Length: 346 bp
gcagacagaggagaaacctggttggtgtaatgatccgcatttgccgccctgtgcagcgtttgtagaaattatggcgcctgtattttctcaggatgcatggcgttgtgtttggcatatgattcagaatgacctggtccatggttggggtctggattttgctcttagacgctgtgtagagcctgctcatgagaaaataggagttgtagatgcacagtggattgtccatcaaggtgttccttcacttggaaaccaggggcaagcagggagtgggagagcgccatgggaaggggtatgtaacaatctctgtccttactccttttcttcgtgtgtgcgcggatatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

5.62

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 334
AciI CCGC 3 cut(s) 36, 45, 334
AclWI GGATC 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 143, 243, 285
AjnI CCWGG 3 cut(s) 17, 130, 250
AlwI GGATC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 54
AspLEI GCGC 3 cut(s) 77, 278, 334
AspS9I GGNCC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 232
BciT130I CCWGG 3 cut(s) 19, 132, 252
BfoI RGCGCY 2 cut(s) 78, 279
BisI GCNGC 2 cut(s) 45, 55
BlsI GCNGC 2 cut(s) 46, 56
Bme1390I CCNGG 3 cut(s) 19, 132, 252
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 3 cut(s) 19, 132, 252
BmsI GCATC 2 cut(s) 83, 197
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 137, 251, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 243, 285
BseBI CCWGG 3 cut(s) 19, 132, 252
BseDI CCNNGG 3 cut(s) 137, 251, 279
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 143, 243, 285
BseMII CTCAG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 74
BslI CCNNNNNNNGG 3 cut(s) 143, 243, 285
Bsp143I GATC 1 cut(s) 32
Bsp19I CCATGG 2 cut(s) 137, 279
BspACI CCGC 3 cut(s) 36, 45, 334
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 74
BssECI CCNNGG 3 cut(s) 137, 251, 279
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 137, 279
Bst2UI CCWGG 3 cut(s) 19, 132, 252
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 181, 259
BstDEI CTNAG 2 cut(s) 88, 162
BstDSI CCRYGG 2 cut(s) 137, 279
BstF5I GGATG 1 cut(s) 98
BstFNI CGCG 1 cut(s) 334
BstH2I RGCGCY 2 cut(s) 78, 279
BstHHI GCGC 3 cut(s) 77, 278, 334
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 3 cut(s) 19, 132, 252
BstSCI CCNGG 3 cut(s) 17, 130, 250
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 66
BtgI CCRYGG 2 cut(s) 137, 279
BtsCI GGATG 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 181, 259
CciI TCATGA 1 cut(s) 185
CfoI GCGC 3 cut(s) 77, 278, 334
Cfr13I GGNCC 1 cut(s) 134
CseI GACGC 1 cut(s) 175
CsiI ACCWGGT 2 cut(s) 17, 130
CviAII CATG 4 cut(s) 97, 138, 186, 280
CviJI RGCY 1 cut(s) 179
CviKI_1 RGCY 1 cut(s) 179
DdeI CTNAG 2 cut(s) 88, 162
DinI GGCGCC 1 cut(s) 76
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eco130I CCWWGG 2 cut(s) 137, 279
Eco47I GGWCC 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 17, 130, 250
EcoT14I CCWWGG 2 cut(s) 137, 279
EcoT22I ATGCAT 2 cut(s) 98, 344
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 2 cut(s) 137, 279
FaeI CATG 4 cut(s) 100, 141, 189, 283
FatI CATG 4 cut(s) 96, 137, 185, 279
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 45, 55
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 45, 55
GlaI GCGC 3 cut(s) 76, 277, 333
GluI GCNGC 2 cut(s) 45, 55
HaeII RGCGCY 2 cut(s) 78, 279
HgaI GACGC 1 cut(s) 175
HhaI GCGC 3 cut(s) 77, 278, 334
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 4 cut(s) 100, 141, 189, 283
Hin6I GCGC 3 cut(s) 75, 276, 332
HinP1I GCGC 3 cut(s) 75, 276, 332
HinfI GANTC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 90, 150, 186
HpyAV CCTTC 2 cut(s) 247, 279
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 54, 96, 210, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 88, 162
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 4 cut(s) 100, 141, 189, 283
HspAI GCGC 3 cut(s) 75, 276, 332
KasI GGCGCC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 32
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 83, 197
MabI ACCWGGT 2 cut(s) 17, 130
MaeIII GTNAC 1 cut(s) 294
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 1 cut(s) 313
MluCI AATT 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 75
Mph1103I ATGCAT 2 cut(s) 98, 344
MslI CAYNNNNRTG 1 cut(s) 229
MspR9I CCNGG 3 cut(s) 19, 132, 252
MvaI CCWGG 3 cut(s) 19, 132, 252
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 44
NarI GGCGCC 1 cut(s) 75
NcoI CCATGG 2 cut(s) 137, 279
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 32
NlaIII CATG 4 cut(s) 100, 141, 189, 283
NlaIV GGNNCC 1 cut(s) 76
NsiI ATGCAT 2 cut(s) 98, 344
PagI TCATGA 1 cut(s) 185
PfeI GAWTC 1 cut(s) 119
PflFI GACNNNGTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 46, 56
PluTI GGCGCC 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 17, 130, 250
PspGI CCWGG 3 cut(s) 17, 130, 250
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 134
PsyI GACNNNGTC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 229
SatI GCNGC 2 cut(s) 45, 55
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 19, 132, 252
SetI ASST 3 cut(s) 20, 133, 233
SexAI ACCWGGT 2 cut(s) 17, 130
SfaNI GCATC 2 cut(s) 83, 197
SfoI GGCGCC 1 cut(s) 76
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 229
Sse9I AATT 1 cut(s) 67
SsiI CCGC 3 cut(s) 36, 45, 334
SspDI GGCGCC 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 17, 130, 250
StyI CCWWGG 2 cut(s) 137, 279
TaaI ACNGT 1 cut(s) 214
TasI AATT 1 cut(s) 67
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 54
TspRI CASTG 1 cut(s) 219
Tth111I GACNNNGTC 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 134
Zsp2I ATGCAT 2 cut(s) 98, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.