RLG00000011084

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000461
Physical Location & Seq
Reverse (-)
6602189 .. 6603179
991 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011084

Sequence Viewer

Length: 315 bp
ATGCTCCCAACTCTTCGATTCCTTAATGTCATGTTCGCATCCGATTCGCAGATTATACTCTCTCTATTATCCAAAACCCAGATTCGCAGAGTAGCGGATTTTGGAGTACCTAAGGTGGTTGGAGTAGCTAAGGTGGTTGATGCAACTGGTTGTGATGAACACAGTAAAGCTCCTCCTTGTACCGGGTGGATAGAATTGATGGCTCCAGTTTTCTCTCAAGCTGCCTGGCGTTGCGTATGGTATATGATCCAGAATAACTTGATCCATGCTTGGGGACTAGATATGCAGCTTGGCTATTGTGCACAGGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

105

Amino Acids

11.54

Weight (kDa)

7.68

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 46 - 103 1.4e-30 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000461)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75820
fragaria_vesca FvH4_2g38230 FvH4_2g38230
malus_domestica MD05G1138900.v1.1 MD05G1139100.v1.1 MD05G1139200.v1.1 MD08G1010700.v1.1 MD08G1241800.v1.1 MD15G1010800.v1.1
prunus_persica Prupe.1G363300_v2.0.a1 Prupe.6G163000_v2.0.a1
pyrus_communis pycom05g13420 pycom05g13430 pycom08g00930 pycom15g00920
rosa_chinensis RchiOBHm_Chr2g0118991 RchiOBHm_Chr2g0119001 RchiOBHm_Chr2g0119031 RchiOBHm_Chr2g0119041 RchiOBHm_Chr2g0119051 RchiOBHm_Chr2g0119091 RchiOBHm_Chr2g0119101 RchiOBHm_Chr2g0119111 RchiOBHm_Chr2g0120661 RchiOBHm_Chr2g0173321 RchiOBHm_Chr3g0478281 RchiOBHm_Chr4g0421131 RchiOBHm_Chr6g0303151
rosa_laevigata RLG00000011084 RLG00000011103 RLG00000018441 RLG00000018445 RLG00000018565 RLG00000018566 RLG00000018567 RLG00000018568 RLG00000018571
rosa_multiflora Rmu_co8157004.1_g000001 Rmu_co8277963.1_g000001 Rmu_co8302039.1_g000001 Rmu_co8360703.1_g000001 Rmu_co8384839.1_g000001 Rmu_sc0000319.1_g000027 Rmu_sc0001653.1_g000012 Rmu_sc0001653.1_g000013 Rmu_sc0001653.1_g000021 Rmu_sc0001822.1_g000002 Rmu_sc0001822.1_g000008 Rmu_sc0001822.1_g000030 Rmu_sc0001844.1_g000003 Rmu_sc0008911.1_g000007 Rmu_sc0019499.1_g000001 Rmu_sc0025689.1_g000001
rosa_roxburghii Rroxscaffold_2G00123240 Rroxscaffold_2G00123260 Rroxscaffold_2G00124530 Rroxscaffold_7G00164970 Rroxscaffold_7G00192210
rosa_rugosa Rorug02G0220100 Rorug02G0220200 Rorug02G0230200 Rorug02G0230300 Rorug06G0319400
rosa_samantha Rh2AG277100 Rh2AG277200 Rh2AG277700 Rh2AG277800 Rh2AG278100 Rh2AG278300 Rh2AG286600 Rh2BG289000 Rh2BG289200 Rh2BG298100 Rh2BG298200 Rh2CG275700 Rh2CG275900 Rh2CG623600 Rh2DG284200 Rh2DG303300 Rh2DG303400 Rh2DG303500 Rh2DG312000 Rh2DG312100 Rh6AG433400 Rh6BG469300 Rh6CG445900 Rh6DG432500
rosa_wichuraiana Rw2G022080 Rw2G022990 Rw2G023000 Rw6G037580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AclWI GGATC 2 cut(s) 241, 256
AfaI GTAC 2 cut(s) 108, 181
AfiI CCNNNNNNNGG 2 cut(s) 182, 271
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 128, 170, 221, 289
AluI AGCT 4 cut(s) 128, 170, 221, 289
Alw21I GWGCWC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 2 cut(s) 241, 256
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 221, 286
AsuC2I CCSGG 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 208, 298
BccI CCATC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 184
BfaI CTAG 1 cut(s) 278
BisI GCNGC 2 cut(s) 222, 287
BlsI GCNGC 2 cut(s) 223, 288
Bme1390I CCNGG 2 cut(s) 184, 226
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 2 cut(s) 184, 226
BmsI GCATC 2 cut(s) 47, 130
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 271
Bse1I ACTGG 2 cut(s) 151, 206
Bse21I CCTNAGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 182, 271
BseNI ACTGG 2 cut(s) 151, 206
BseRI GAGGAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 2 cut(s) 208, 298
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 2 cut(s) 182, 271
BsmFI GGGAC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 246, 261
BspACI CCGC 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 241, 256
BsrI ACTGG 2 cut(s) 151, 206
BssMI GATC 2 cut(s) 246, 261
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 111, 129
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 2 cut(s) 249, 264
BstMBI GATC 2 cut(s) 246, 261
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 182, 224
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 208, 298
Bsu36I CCTNAGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 38
Csp6I GTAC 2 cut(s) 107, 180
CviAII CATG 2 cut(s) 31, 266
CviJI RGCY 6 cut(s) 128, 170, 203, 221, 289, 294
CviKI_1 RGCY 6 cut(s) 128, 170, 203, 221, 289, 294
CviQI GTAC 2 cut(s) 107, 180
DdeI CTNAG 2 cut(s) 111, 129
DpnI GATC 2 cut(s) 248, 263
DpnII GATC 2 cut(s) 246, 261
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 34, 269
FaiI YATR 7 cut(s) 32, 56, 238, 243, 245, 267, 284
FaqI GGGAC 1 cut(s) 288
FatI CATG 2 cut(s) 30, 265
Fnu4HI GCNGC 2 cut(s) 222, 287
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 222, 287
FspBI CTAG 1 cut(s) 278
GluI GCNGC 2 cut(s) 222, 287
GsuI CTGGAG 1 cut(s) 189
HapII CCGG 1 cut(s) 183
Hin1II CATG 2 cut(s) 34, 269
HinfI GANTC 3 cut(s) 18, 44, 82
HpaII CCGG 1 cut(s) 183
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 143, 286, 302
HpyF3I CTNAG 2 cut(s) 111, 129
Hsp92II CATG 2 cut(s) 34, 269
Kzo9I GATC 2 cut(s) 246, 261
LmnI GCTCC 3 cut(s) 9, 175, 208
LpnPI CCDG 8 cut(s) 92, 132, 196, 211, 219, 238, 263, 290
Lsp1109I GCAGC 2 cut(s) 208, 298
LweI GCATC 2 cut(s) 47, 130
MaeI CTAG 1 cut(s) 278
MalI GATC 2 cut(s) 248, 263
MboI GATC 2 cut(s) 246, 261
MboII GAAGA 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 2 cut(s) 194, 310
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 1 cut(s) 183
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 2 cut(s) 184, 226
MvaI CCWGG 1 cut(s) 226
NciI CCSGG 1 cut(s) 184
NdeII GATC 2 cut(s) 246, 261
NlaIII CATG 2 cut(s) 34, 269
NlaIV GGNNCC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 18, 44, 82
PkrI GCNGC 2 cut(s) 223, 288
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 204
RsaI GTAC 2 cut(s) 108, 181
RsaNI GTAC 2 cut(s) 107, 180
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 222, 287
Sau3AI GATC 2 cut(s) 246, 261
ScrFI CCNGG 2 cut(s) 184, 226
SduI GDGCHC 1 cut(s) 304
SetI ASST 7 cut(s) 112, 117, 130, 135, 172, 223, 291
SfaNI GCATC 2 cut(s) 47, 130
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 194, 310
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 2 cut(s) 182, 224
TaaI ACNGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 194, 310
TfiI GAWTC 3 cut(s) 18, 44, 82
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 2 cut(s) 221, 286
TspDTI ATGAA 1 cut(s) 171
VneI GTGCAC 1 cut(s) 300
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.