Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

17039113 .. 17039706

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCTGGCCTCACAGCTCTCCAGGCTCTAACCGAAGCCGCAGGTATCAAGTTGGATGGAACTGGTCAACATAAGAACGTACTCATCACCGGTGCCTCTGGTGGAGTTGGTCTCTACGCAGTCCAGCTAGCAAAGCTCGGAAACACTCATGTAACAGCTACTTGTGGAACAAGAAACATTGAATTGGTCAAGAGCTTAGGGGCAGACGAGGTCCTTGACTACAACACACCTGATGGGGCAGCCCTAAGGAGCCCATCAGATCGGAAATATGATTTCGTAATCCACAGCGCATCGTCAGCAATTCCTTGGTCGATTTTCAAGCCAAATTTGAGCGAAAGAGGGCTGGTTATAGACCTTACTCCGGGTGCAAGTTCATTGTTCACTTTTGTTCTGAAGAAGATCACTTTCTCCAAGAAGATGGTGCCGCTGATGATAAATGCAAAGGCTGAGAACCTGGATTGTCTTGTGAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCGAAGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAGAGACTCAATAGCCAATGCACAGGGAAGATCATTGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

198

Amino Acids

20.99

Weight (kDa)

9.22

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	35 - 98	8.7e-09	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	66 - 195	6.2e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	92, 421
AciI	CCGC	2 cut(s)	39, 425
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	413, 552
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	182, 319
AjnI	CCWGG	2 cut(s)	21, 453
AluBI	AGCT	6 cut(s)	17, 127, 136, 158, 195, 490
AluI	AGCT	6 cut(s)	17, 127, 136, 158, 195, 490
Alw26I	GTCTC	2 cut(s)	116, 544
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	325
AsiGI	ACCGGT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	3 cut(s)	79, 487, 511
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	211
AxyI	CCTNAGG	1 cut(s)	245
BanI	GGYRCC	2 cut(s)	92, 421
BanII	GRGCYC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	4 cut(s)	50, 227, 262, 412
BciT130I	CCWGG	2 cut(s)	23, 455
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	116, 544
BfaI	CTAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	39, 240, 425
BlsI	GCNGC	3 cut(s)	40, 241, 426
Bme1390I	CCNGG	3 cut(s)	23, 363, 455
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	4 cut(s)	94, 251, 423, 588
BmrFI	CCNGG	3 cut(s)	23, 363, 455
BmsI	GCATC	3 cut(s)	299, 523, 526
BmtI	GCTAGC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpmI	CTGGAG	1 cut(s)	5
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	67
Bse21I	CCTNAGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	23, 455
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	2 cut(s)	61, 514
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	438, 512
BseNI	ACTGG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	2 cut(s)	92, 421
BshTI	ACCGGT	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	90, 362
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	2 cut(s)	116, 544
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	259, 399, 501, 576
BspACI	CCGC	2 cut(s)	39, 425
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	439, 513
BspLI	GGNNCC	4 cut(s)	94, 251, 423, 588
BspMI	ACCTGC	1 cut(s)	32
BspOI	GCTAGC	1 cut(s)	131
BspT107I	GGYRCC	2 cut(s)	92, 421
BspTNI	GGTCTC	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	4 cut(s)	259, 399, 501, 576
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	2 cut(s)	23, 455
Bst4CI	ACNGT	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	7, 129
BstDEI	CTNAG	5 cut(s)	196, 245, 447, 521, 546
BstF5I	GGATG	2 cut(s)	61, 514
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	262, 402, 504, 579
BstMAI	GTCTC	2 cut(s)	116, 544
BstMBI	GATC	4 cut(s)	259, 399, 501, 576
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 133, 296, 536
BstNI	CCWGG	2 cut(s)	23, 455
BstSCI	CCNGG	3 cut(s)	21, 361, 453
BstV1I	GCAGC	1 cut(s)	251
BstXI	CCANNNNNNTGG	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	61, 514
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	2 cut(s)	7, 129
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	80
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	5 cut(s)	196, 245, 447, 521, 546
DpnI	GATC	4 cut(s)	261, 401, 503, 578
DpnII	GATC	4 cut(s)	259, 399, 501, 576
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	211
Eco57I	CTGAAG	2 cut(s)	413, 552
Eco81I	CCTNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	21, 453
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	1 cut(s)	152
FaiI	YATR	4 cut(s)	72, 150, 270, 350
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	39, 240, 425
FokI	GGATG	2 cut(s)	68, 501
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	3 cut(s)	39, 240, 425
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	3 cut(s)	39, 240, 425
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	90, 362
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	2 cut(s)	506, 552
HpaII	CCGG	2 cut(s)	90, 362
HphI	GGTGA	3 cut(s)	79, 487, 511
Hpy166II	GTNNAC	2 cut(s)	68, 381
Hpy188I	TCNGA	5 cut(s)	140, 259, 264, 393, 522
Hpy188III	TCNNGA	2 cut(s)	190, 493
Hpy8I	GTNNAC	2 cut(s)	68, 381
HpyAV	CCTTC	2 cut(s)	472, 476
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	368, 440, 567
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 133, 296, 536
HpyF3I	CTNAG	5 cut(s)	196, 245, 447, 521, 546
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	259, 399, 501, 576
LmnI	GCTCC	2 cut(s)	249, 586
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	3 cut(s)	299, 523, 526
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	4 cut(s)	261, 401, 503, 578
MboI	GATC	4 cut(s)	259, 399, 501, 576
MboII	GAAGA	5 cut(s)	406, 409, 427, 545, 586
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	3 cut(s)	182, 300, 325
MlyI	GAGTC	2 cut(s)	500, 546
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	20, 106, 202, 332, 528
MseI	TTAA	1 cut(s)	592
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	2 cut(s)	90, 362
MspR9I	CCNGG	3 cut(s)	23, 363, 455
MvaI	CCWGG	2 cut(s)	23, 455
MwoI	GCNNNNNNNGC	4 cut(s)	23, 133, 296, 536
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	259, 399, 501, 576
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	4 cut(s)	94, 251, 423, 588
PflFI	GACNNNGTC	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	40, 241, 426
PleI	GAGTC	2 cut(s)	500, 546
PpsI	GAGTC	2 cut(s)	500, 546
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	21, 453
PspGI	CCWGG	2 cut(s)	21, 453
PspN4I	GGNNCC	4 cut(s)	94, 251, 423, 588
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	3 cut(s)	39, 240, 425
Sau3AI	GATC	4 cut(s)	259, 399, 501, 576
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	2 cut(s)	500, 546
ScrFI	CCNGG	3 cut(s)	23, 363, 455
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	3 cut(s)	299, 523, 526
SgrAI	CRCCGGYG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	182, 300, 325
SsiI	CCGC	2 cut(s)	39, 425
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	21, 361, 453
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	311, 504, 509
TasI	AATT	3 cut(s)	182, 300, 325
TauI	GCSGC	2 cut(s)	41, 427
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	325
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.