Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

14851544 .. 14854800

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAATGGGGGAACTATTGATGTCCTGTCCTGGCATCAAGGCTTTACTTCTATTACTCTCTTAGCTATGAATATACCGGTGATATCGCAGAAATTAGAGGGTGGACATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGAATGCTTCTCCGAAAATCCAAAAGATGGAAAAGATGCTGAAACTGCAGAAGCTGGACCCTCTTCGAGCAAGGATGCTTCTTCCAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGGAGCTGGACGAGCAAGGATGTGTCCCCTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

6.5

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	2 cut(s)	167, 347
AfiI	CCNNNNNNNGG	2 cut(s)	238, 271
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	152, 221
AjnI	CCWGG	2 cut(s)	29, 112
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	4 cut(s)	65, 217, 298, 370
AluI	AGCT	4 cut(s)	65, 217, 298, 370
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	2 cut(s)	298, 370
ApeKI	GCWGC	2 cut(s)	130, 158
AsiGI	ACCGGT	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	142, 170
BccI	CCATC	2 cut(s)	111, 265
BciT130I	CCWGG	2 cut(s)	31, 114
BfmI	CTRYAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	131, 159
BlsI	GCNGC	2 cut(s)	132, 160
Bme1390I	CCNGG	2 cut(s)	31, 114
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	31, 114
BmsI	GCATC	4 cut(s)	43, 145, 270, 309
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 271
Bse118I	RCCGGY	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	31, 114
BseGI	GGATG	3 cut(s)	122, 324, 389
BseLI	CCNNNNNNNGG	2 cut(s)	238, 271
BseXI	GCAGC	2 cut(s)	142, 170
BsgI	GTGCAG	1 cut(s)	149
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	238, 271
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	31, 114
Bst6I	CTCTTC	2 cut(s)	170, 312
BstAPI	GCANNNNNTGC	2 cut(s)	127, 248
BstDEI	CTNAG	2 cut(s)	61, 237
BstF5I	GGATG	3 cut(s)	122, 324, 389
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	5 cut(s)	127, 167, 248, 289, 376
BstNI	CCWGG	2 cut(s)	31, 114
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	29, 112
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	142, 170
BtsCI	GGATG	3 cut(s)	122, 324, 389
CaiI	CAGNNNCTG	2 cut(s)	298, 370
CciI	TCATGA	1 cut(s)	136
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	4 cut(s)	107, 137, 167, 233
CviJI	RGCY	8 cut(s)	42, 65, 133, 161, 180, 217, 298, 370
CviKI_1	RGCY	8 cut(s)	42, 65, 133, 161, 180, 217, 298, 370
DdeI	CTNAG	2 cut(s)	61, 237
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	170, 312
EarI	CTCTTC	2 cut(s)	170, 312
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	167, 347
EcoRII	CCWGG	2 cut(s)	29, 112
EcoRV	GATATC	1 cut(s)	84
FaeI	CATG	4 cut(s)	110, 140, 170, 236
FaiI	YATR	7 cut(s)	68, 74, 108, 138, 168, 213, 234
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	4 cut(s)	106, 136, 166, 232
Fnu4HI	GCNGC	2 cut(s)	131, 159
FokI	GGATG	3 cut(s)	129, 331, 396
Fsp4HI	GCNGC	2 cut(s)	131, 159
GluI	GCNGC	2 cut(s)	131, 159
GsuI	CTGGAG	1 cut(s)	96
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	361
Hin1II	CATG	4 cut(s)	110, 140, 170, 236
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	4 cut(s)	137, 152, 221, 365
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	130, 158, 292
HpyF10VI	GCNNNNNNNGC	5 cut(s)	127, 167, 248, 289, 376
HpyF3I	CTNAG	2 cut(s)	61, 237
Hsp92II	CATG	4 cut(s)	110, 140, 170, 236
Kzo9I	GATC	1 cut(s)	139
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	2 cut(s)	115, 367
Lsp1109I	GCAGC	2 cut(s)	142, 170
LweI	GCATC	4 cut(s)	43, 145, 270, 309
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	187, 299, 317
MluCI	AATT	2 cut(s)	92, 196
MnlI	CCTC	4 cut(s)	91, 144, 153, 315
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	31, 114
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	31, 114
MwoI	GCNNNNNNNGC	5 cut(s)	127, 167, 248, 289, 376
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	110, 140, 170, 236
NlaIV	GGNNCC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	110
PagI	TCATGA	1 cut(s)	136
PciSI	GCTCTTC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	253
PflMI	CCANNNNNTGG	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	112
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	132, 160
Psp6I	CCWGG	2 cut(s)	29, 112
PspGI	CCWGG	2 cut(s)	29, 112
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	2 cut(s)	298, 370
SapI	GCTCTTC	1 cut(s)	170
SatI	GCNGC	2 cut(s)	131, 159
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	31, 114
SetI	ASST	5 cut(s)	67, 219, 300, 343, 372
SfaNI	GCATC	4 cut(s)	43, 145, 270, 309
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	92, 196
StyD4I	CCNGG	2 cut(s)	29, 112
TaqI	TCGA	1 cut(s)	310
TasI	AATT	2 cut(s)	92, 196
TseI	GCWGC	2 cut(s)	130, 158
TspDTI	ATGAA	3 cut(s)	17, 83, 189
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	301
XceI	RCATGY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.