RchiOBHm_Chr1g0332621

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
24125805 .. 24130072
4268 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGGTTTGTTTTGGAGTGATGGCTGCGATGTTTGTTAGAGATGCTAAGGCTCTTTGTCCACACCTTGTCATTCTTCCTTATGATTTTGCAGCGTATGAGGAGGTAGCTAATCAGTTCTATGACATTCTACATAAGCACTGTAGAAAAGTACAAGCAGTAAGCTGTGACGAAGCATTTTTAGATGTCACATTCTTGGAAGGGGTAGATATGGATATGTTAGCCTCAATTATAATACAAGAGATCTTTGAGACTACTGGATGCATTGCAAGTGCTGGCATAGCTAGAAATATGCTCATGCCTTGCCTTACAACAAGAACTGCTAAACCAGATGGTCGATGCAACATTCCTCCCAAAAGGGGGCATGATTATTTATATGAACTTCCCATCAAGACGCTTCTAGGAATAGGACACGTTTTAGAGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAATTGCGCATGATTCCTAAGGTCCTTGCAATGTGGTTTGTAGTAGCTATTTTTATGCTGGTGGATGTGTATGGTTGGCACGTTTATCTTTGGCTATCCTATGTTCCACTTTTGAATGCATTTGAGCTTGCCTTCTTTGTTTGCGTTCCTGCCCAATTCGGAGTAAAATTGTGCTACCACGAGCACACTATGATCATTGTTACAAGAGTTTTCTTAGTGGTGACCACCCAAGTCCTCTGTAGCTACATTACTCTTCCTCCGTATGCACTTGTAACACAGATGGGTTCACAATTCAAGGTTAAGATACTAGAAGATAACATGGCTGGCATTCTAAAGCAATGGCACAGTGATGTGAGGAGGAAAGGGAAGAAGGAAGAACAAGAATCACAATCGTGCAGCACGTCTTTTTCCATGGAATGGAGCTCCATGAGGCACAACATATGTATATGCAGATTTCTTACTTCTGATATGAATCAAATTAGTTATATATATTTGAAGCCTACTTAG

Protein Analysis

320

Amino Acids

36.6

Weight (kDa)

7.89

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 4 - 99 6.4e-22 impB/mucB/samB family
Mlo PF03094 190 - 287 1e-30 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
Acc16I TGCGCA 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 873
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 356, 357, 873
AflIII ACRYGT 2 cut(s) 409, 449
AgsI TTSAA 4 cut(s) 430, 571, 751, 952
AjiI CACGTC 2 cut(s) 450, 858
AleI CACNNNNGTG 1 cut(s) 847
AluBI AGCT 7 cut(s) 107, 162, 281, 503, 583, 699, 879
AluI AGCT 7 cut(s) 107, 162, 281, 503, 583, 699, 879
Alw21I GWGCWC 2 cut(s) 642, 881
Alw26I GTCTC 1 cut(s) 242
ApeKI GCWGC 3 cut(s) 23, 89, 852
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 688
AvaII GGWCC 1 cut(s) 478
AxyI CCTNAGG 1 cut(s) 474
BanII GRGCYC 1 cut(s) 881
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 2 cut(s) 642, 881
BbvI GCAGC 3 cut(s) 10, 101, 864
BccI CCATC 4 cut(s) 13, 323, 392, 730
BclI TGATCA 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 282, 398, 764
BfmI CTRYAG 2 cut(s) 139, 694
BglII AGATCT 1 cut(s) 240
BisI GCNGC 3 cut(s) 24, 90, 853
BlsI GCNGC 3 cut(s) 25, 91, 854
Bme18I GGWCC 1 cut(s) 478
BmgBI CACGTC 2 cut(s) 450, 858
BmgT120I GGNCC 1 cut(s) 478
BmsI GCATC 3 cut(s) 31, 248, 326
Bpu10I CCTNAGC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 1 cut(s) 867
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 357, 873
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 3 cut(s) 261, 492, 800
Bse8I GATNNNNATC 1 cut(s) 927
BseDI CCNNGG 1 cut(s) 867
BseGI GGATG 2 cut(s) 263, 526
BseJI GATNNNNATC 1 cut(s) 927
BseLI CCNNNNNNNGG 3 cut(s) 356, 357, 873
BseMI GCAATG 3 cut(s) 261, 492, 800
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 3 cut(s) 113, 434, 826
BseXI GCAGC 3 cut(s) 10, 101, 864
BsgI GTGCAG 1 cut(s) 871
BsiHKAI GWGCWC 2 cut(s) 642, 881
BslI CCNNNNNNNGG 3 cut(s) 356, 357, 873
BsmAI GTCTC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 577, 783
Bsp1286I GDGCHC 2 cut(s) 642, 881
Bsp143I GATC 2 cut(s) 240, 648
Bsp19I CCATGG 1 cut(s) 867
BsrDI GCAATG 3 cut(s) 261, 492, 800
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 867
BssMI GATC 2 cut(s) 240, 648
BssSI CACGAG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 867
Bst2BI CACGAG 1 cut(s) 635
Bst4CI ACNGT 2 cut(s) 140, 803
Bst6I CTCTTC 1 cut(s) 714
BstC8I GCNNGC 3 cut(s) 274, 585, 781
BstDEI CTNAG 4 cut(s) 45, 474, 670, 960
BstDSI CCRYGG 1 cut(s) 867
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 2 cut(s) 263, 526
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 243, 651
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 240, 648
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstPI GGTNACC 1 cut(s) 676
BstSFI CTRYAG 2 cut(s) 139, 694
BstV1I GCAGC 3 cut(s) 10, 101, 864
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 474
BtgI CCRYGG 1 cut(s) 867
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 2 cut(s) 450, 858
BtsCI GGATG 2 cut(s) 263, 526
BtsIMutI CAGTG 2 cut(s) 136, 808
Cac8I GCNNGC 3 cut(s) 274, 585, 781
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 1 cut(s) 400
Csp6I GTAC 1 cut(s) 149
CviAII CATG 6 cut(s) 295, 362, 466, 775, 868, 883
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 4 cut(s) 45, 474, 670, 960
DpnI GATC 2 cut(s) 242, 650
DpnII GATC 2 cut(s) 240, 648
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Ecl136II GAGCTC 1 cut(s) 879
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 879
Eco81I CCTNAGG 1 cut(s) 474
Eco91I GGTNACC 1 cut(s) 676
EcoICRI GAGCTC 1 cut(s) 879
EcoO109I RGGNCCY 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 867
EcoT22I ATGCAT 2 cut(s) 263, 577
EcoT38I GRGCYC 1 cut(s) 881
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 6 cut(s) 298, 365, 469, 778, 871, 886
FatI CATG 6 cut(s) 294, 361, 465, 774, 867, 882
FauNDI CATATG 1 cut(s) 896
FbaI TGATCA 1 cut(s) 648
Fnu4HI GCNGC 3 cut(s) 24, 90, 853
FokI GGATG 2 cut(s) 270, 533
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 3 cut(s) 24, 90, 853
FspBI CTAG 3 cut(s) 282, 398, 764
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 24, 90, 853
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 465
Hin1II CATG 6 cut(s) 298, 365, 469, 778, 871, 886
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 3 cut(s) 469, 839, 928
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 3 cut(s) 59, 455, 743
Hpy188I TCNGA 2 cut(s) 617, 922
Hpy188III TCNNGA 1 cut(s) 388
Hpy8I GTNNAC 3 cut(s) 59, 455, 743
HpyAV CCTTC 3 cut(s) 191, 598, 820
HpyCH4III ACNGT 2 cut(s) 140, 803
HpyCH4IV ACGT 4 cut(s) 411, 449, 537, 857
HpyCH4V TGCA 9 cut(s) 89, 261, 266, 339, 485, 575, 722, 852, 906
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 4 cut(s) 45, 474, 670, 960
HpySE526I ACGT 4 cut(s) 411, 449, 537, 857
Hsp92II CATG 6 cut(s) 298, 365, 469, 778, 871, 886
HspAI GCGC 1 cut(s) 463
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 2 cut(s) 240, 648
LmnI GCTCC 2 cut(s) 876, 884
LpnPI CCDG 6 cut(s) 240, 258, 339, 500, 618, 765
Lsp1109I GCAGC 3 cut(s) 10, 101, 864
LweI GCATC 3 cut(s) 31, 248, 326
MaeI CTAG 3 cut(s) 282, 398, 764
MaeII ACGT 4 cut(s) 411, 449, 537, 857
MaeIII GTNAC 5 cut(s) 164, 184, 655, 676, 727
MalI GATC 2 cut(s) 242, 650
MboI GATC 2 cut(s) 240, 648
MboII GAAGA 6 cut(s) 65, 442, 701, 779, 835, 842
MfeI CAATTG 1 cut(s) 458
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 2 cut(s) 642, 881
MluCI AATT 6 cut(s) 225, 458, 611, 623, 746, 933
Mph1103I ATGCAT 2 cut(s) 263, 577
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 2 cut(s) 804, 847
MunI CAATTG 1 cut(s) 458
Mva1269I GAATGC 2 cut(s) 577, 783
MwoI GCNNNNNNNGC 1 cut(s) 278
NcoI CCATGG 1 cut(s) 867
NdeI CATATG 1 cut(s) 896
NdeII GATC 2 cut(s) 240, 648
NlaIII CATG 6 cut(s) 298, 365, 469, 778, 871, 886
NmuCI GTSAC 3 cut(s) 164, 184, 676
NsbI TGCGCA 1 cut(s) 464
NsiI ATGCAT 2 cut(s) 263, 577
OliI CACNNNNGTG 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 854
PctI GAATGC 2 cut(s) 577, 783
PfeI GAWTC 3 cut(s) 469, 839, 928
PflMI CCANNNNNTGG 1 cut(s) 873
PkrI GCNGC 3 cut(s) 25, 91, 854
PpuMI RGGWCCY 1 cut(s) 478
PsiI TTATAA 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 881
Psp5II RGGWCCY 1 cut(s) 478
PspEI GGTNACC 1 cut(s) 676
PspPI GGNCC 1 cut(s) 478
PspPPI RGGWCCY 1 cut(s) 478
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 804, 847
SacI GAGCTC 1 cut(s) 881
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 3 cut(s) 24, 90, 853
Sau3AI GATC 2 cut(s) 240, 648
Sau96I GGNCC 1 cut(s) 478
SduI GDGCHC 2 cut(s) 642, 881
SfaNI GCATC 3 cut(s) 31, 248, 326
SfcI CTRYAG 2 cut(s) 139, 694
SinI GGWCC 1 cut(s) 478
SmiMI CAYNNNNRTG 2 cut(s) 804, 847
Sse9I AATT 6 cut(s) 225, 458, 611, 623, 746, 933
SspMI CTAG 3 cut(s) 282, 398, 764
SstI GAGCTC 1 cut(s) 881
StyI CCWWGG 1 cut(s) 867
TaaI ACNGT 2 cut(s) 140, 803
TaiI ACGT 4 cut(s) 414, 452, 540, 860
TaqI TCGA 1 cut(s) 334
TasI AATT 6 cut(s) 225, 458, 611, 623, 746, 933
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 3 cut(s) 469, 839, 928
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 2 cut(s) 143, 808
TseFI GTSAC 3 cut(s) 164, 184, 676
TseI GCWGC 3 cut(s) 23, 89, 852
Tsp45I GTSAC 3 cut(s) 164, 184, 676
TspDTI ATGAA 2 cut(s) 390, 941
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 2 cut(s) 143, 808
Van91I CCANNNNNTGG 1 cut(s) 873
VpaK11BI GGWCC 1 cut(s) 478
XspI CTAG 3 cut(s) 282, 398, 764
Zsp2I ATGCAT 2 cut(s) 263, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.