Rw3G018660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000565
Physical Location & Seq
Forward (+)
20940532 .. 20941891
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018660.1

Sequence Viewer

Length: 708 bp
ATGGATCAGATCACAAACTACTCAAAAATCTCAATCCTAACCACCTCAATTAAGTGTGGATTCCAAAGAGTGAGAGGTTTCCCATATACTGTAGCTAATAAAGAAAGAGGAAGAAAGAAGAGAAAGAAAACAAAGAACAATGATGGTGGCGGCGGAGGGAATGTTGGACTTACTCCCGACATCAATCTCTTAAATTGGGTGTTGCAATTACTTGAGTGGGCGTTGTGGGTTATCAACCTCGGCATAGCCACAATTGAAGGTCACAAGAATGTACGAGTCAATGTTAAAGAGGCTGTGCTGGCGATGCGTACTAGCATGGCTTTGATTCATGAGTCGTCGGCCCAGATTGCAGGATCAGTGATGCTAATCAATGGAATCTTGGGTCAGCTGCAGATCCATCAAATTTGGGTTCAGATGCAAGCTATTAATGTAGCGGTTAGGGCCATTGAAGATCTGCTAATGGGGCTCCACCGTGGTTGCCTGGTTATAGTTGCGGCCCAAGTCGATGGCAGTGCTCACTCCCAAATTCAAGTCGGATTGGCTGATTTGGACTATGCATTGGGTAGGTTTCTAGCGGCGAATAATAAACGTCTTGCTAATCTCCCCAGTTTGTTCTTAACTATTATGATTTCTGCTAGGTTCTCCAATGACAATGAGGATGGTCATGTTGATGGCGGTGTAAGCGGGCAAGAATGTGGAAAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.56

Weight (kDa)

9.27

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 150, 153, 434, 494, 575, 675, 684
AclWI GGATC 3 cut(s) 12, 361, 388
AcsI RAATTY 2 cut(s) 402, 525
AfaI GTAC 2 cut(s) 273, 310
AgsI TTSAA 3 cut(s) 257, 449, 530
AjnI CCWGG 1 cut(s) 480
AluBI AGCT 3 cut(s) 95, 388, 422
AluI AGCT 3 cut(s) 95, 388, 422
Alw21I GWGCWC 1 cut(s) 517
AlwI GGATC 3 cut(s) 12, 361, 388
AoxI GGCC 3 cut(s) 339, 441, 495
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 2 cut(s) 402, 525
AseI ATTAAT 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 340, 441, 496
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 1 cut(s) 375
BccI CCATC 5 cut(s) 137, 405, 500, 653, 665
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 482
BfaI CTAG 4 cut(s) 312, 572, 636, 706
BfmI CTRYAG 2 cut(s) 90, 389
BglII AGATCT 1 cut(s) 451
BisI GCNGC 4 cut(s) 151, 389, 495, 576
BlsI GCNGC 4 cut(s) 152, 390, 496, 577
Bme1390I CCNGG 1 cut(s) 482
BmgT120I GGNCC 3 cut(s) 340, 441, 496
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 3 cut(s) 294, 351, 405
BmuI ACTGGG 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 238, 472
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 238, 472
BseGI GGATG 1 cut(s) 664
BseJI GATNNNNATC 1 cut(s) 365
BseNI ACTGG 1 cut(s) 606
BseXI GCAGC 1 cut(s) 375
BshFI GGCC 3 cut(s) 341, 443, 497
BsiHKAI GWGCWC 1 cut(s) 517
BsnI GGCC 3 cut(s) 341, 443, 497
Bsp1286I GDGCHC 2 cut(s) 468, 517
Bsp143I GATC 5 cut(s) 4, 9, 353, 393, 451
BspACI CCGC 7 cut(s) 150, 153, 434, 494, 575, 675, 684
BspANI GGCC 3 cut(s) 341, 443, 497
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 393
BspPI GGATC 3 cut(s) 12, 361, 388
BsrI ACTGG 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 238, 472
BssMI GATC 5 cut(s) 4, 9, 353, 393, 451
Bst2UI CCWGG 1 cut(s) 482
Bst4CI ACNGT 2 cut(s) 91, 473
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 300, 420, 686
BstDSI CCRYGG 1 cut(s) 472
BstF5I GGATG 1 cut(s) 664
BstKTI GATC 5 cut(s) 7, 12, 356, 396, 454
BstMBI GATC 5 cut(s) 4, 9, 353, 393, 451
BstMWI GCNNNNNNNGC 6 cut(s) 299, 304, 347, 440, 463, 681
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstSFI CTRYAG 2 cut(s) 90, 389
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 2 cut(s) 393, 451
BstXI CCANNNNNNTGG 1 cut(s) 506
BstYI RGATCY 2 cut(s) 393, 451
BsuRI GGCC 3 cut(s) 341, 443, 497
BtgI CCRYGG 1 cut(s) 472
BtgZI GCGATG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 664
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 2 cut(s) 363, 517
Cac8I GCNNGC 3 cut(s) 300, 420, 686
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 3 cut(s) 340, 441, 496
Csp6I GTAC 2 cut(s) 272, 309
CspCI CAANNNNNGTGG 4 cut(s) 127, 162, 458, 493
CviAII CATG 3 cut(s) 316, 329, 665
CviQI GTAC 2 cut(s) 272, 309
DpnI GATC 5 cut(s) 6, 11, 355, 395, 453
DpnII GATC 5 cut(s) 4, 9, 353, 393, 451
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 480
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 468
FaeI CATG 3 cut(s) 319, 332, 668
FaiI YATR 9 cut(s) 85, 87, 245, 317, 330, 488, 555, 626, 666
FatI CATG 3 cut(s) 315, 328, 664
FauI CCCGC 1 cut(s) 677
Fnu4HI GCNGC 4 cut(s) 151, 389, 495, 576
FokI GGATG 1 cut(s) 671
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 4 cut(s) 151, 389, 495, 576
FspBI CTAG 4 cut(s) 312, 572, 636, 706
GluI GCNGC 4 cut(s) 151, 389, 495, 576
HaeIII GGCC 3 cut(s) 341, 443, 497
Hin1II CATG 3 cut(s) 319, 332, 668
HinfI GANTC 5 cut(s) 60, 276, 325, 332, 375
Hpy188I TCNGA 3 cut(s) 9, 414, 536
Hpy188III TCNNGA 2 cut(s) 176, 329
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 2 cut(s) 91, 473
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 5 cut(s) 205, 350, 391, 418, 557
HpyF10VI GCNNNNNNNGC 6 cut(s) 299, 304, 347, 440, 463, 681
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 3 cut(s) 319, 332, 668
Kzo9I GATC 5 cut(s) 4, 9, 353, 393, 451
LmnI GCTCC 1 cut(s) 471
LpnPI CCDG 6 cut(s) 284, 336, 356, 467, 494, 619
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 3 cut(s) 294, 351, 405
MaeI CTAG 4 cut(s) 312, 572, 636, 706
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 1 cut(s) 260
MalI GATC 5 cut(s) 6, 11, 355, 395, 453
MboI GATC 5 cut(s) 4, 9, 353, 393, 451
MboII GAAGA 3 cut(s) 123, 130, 461
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 393, 451
MhlI GDGCHC 2 cut(s) 468, 517
MluCI AATT 6 cut(s) 48, 193, 206, 252, 402, 525
MlyI GAGTC 2 cut(s) 285, 341
MmeI TCCRAC 2 cut(s) 145, 514
MnlI CCTC 7 cut(s) 55, 68, 101, 149, 248, 283, 649
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 5 cut(s) 51, 191, 285, 426, 617
MslI CAYNNNNRTG 2 cut(s) 267, 669
MspA1I CMGCKG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 482
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 482
MwoI GCNNNNNNNGC 6 cut(s) 299, 304, 347, 440, 463, 681
NdeII GATC 5 cut(s) 4, 9, 353, 393, 451
NlaIII CATG 3 cut(s) 319, 332, 668
NlaIV GGNNCC 1 cut(s) 467
NmeAIII GCCGAG 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 559
PagI TCATGA 1 cut(s) 328
PfeI GAWTC 3 cut(s) 60, 325, 375
PkrI GCNGC 4 cut(s) 152, 390, 496, 577
PleI GAGTC 2 cut(s) 284, 340
PpsI GAGTC 2 cut(s) 284, 340
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 3 cut(s) 340, 441, 496
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 2 cut(s) 393, 451
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 2 cut(s) 273, 310
RsaNI GTAC 2 cut(s) 272, 309
RseI CAYNNNNRTG 2 cut(s) 267, 669
SaqAI TTAA 5 cut(s) 51, 191, 285, 426, 617
SatI GCNGC 4 cut(s) 151, 389, 495, 576
Sau3AI GATC 5 cut(s) 4, 9, 353, 393, 451
Sau96I GGNCC 3 cut(s) 340, 441, 496
SchI GAGTC 2 cut(s) 285, 341
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 2 cut(s) 468, 517
SfaNI GCATC 3 cut(s) 294, 351, 405
SfcI CTRYAG 2 cut(s) 90, 389
SmiMI CAYNNNNRTG 2 cut(s) 267, 669
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 6 cut(s) 48, 193, 206, 252, 402, 525
SsiI CCGC 7 cut(s) 150, 153, 434, 494, 575, 675, 684
SspMI CTAG 4 cut(s) 312, 572, 636, 706
StyD4I CCNGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 91, 473
TaiI ACGT 1 cut(s) 592
TaqI TCGA 1 cut(s) 504
TasI AATT 6 cut(s) 48, 193, 206, 252, 402, 525
TauI GCSGC 3 cut(s) 153, 497, 578
TfiI GAWTC 3 cut(s) 60, 325, 375
Tru1I TTAA 5 cut(s) 51, 191, 285, 426, 617
Tru9I TTAA 5 cut(s) 51, 191, 285, 426, 617
TscAI CASTG 2 cut(s) 363, 517
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 2 cut(s) 363, 517
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 2 cut(s) 402, 525
XspI CTAG 4 cut(s) 312, 572, 636, 706
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.