Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

33231040 .. 33232296

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCGTGGATCCTAGCGAGTCTGCACAGTGGTATGATCCAGCTATGGGACGGAGCTCTTCGCGGTGTTCATTTCCACAAATCTCAGCCTCTCTTTGTGTTTGGAGGTGACGATTACAAGATTAAAGTTTGTAACTACAAGCTGCATAGATGTCTTTTTACTCTTCTCGGGCCTCTAGATTATATTTGTCGCGTTCAATCTCACTTTTTTATGCTTGAAGCTTTGTTGAATGATTTGTACAATGATGCAAGTTTTATAATGGTCTATGCTCCATATGCTCTATGCACTTTAGTCATTCTCATTAAGGTTTATGAATACCATTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000902 GO:0000910 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007276 GO:0008104 GO:0008150 GO:0009653 GO:0009987 GO:0010883 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0032991 GO:0033036 GO:0033206 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0048193 GO:0048232 GO:0048285 GO:0048475 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0051179 GO:0051234 GO:0051301 GO:0051321 GO:0051641 GO:0051649 GO:0051704 GO:0061640 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072657 GO:0072741 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0140013 GO:1903046 GO:1905345 GO:1905952 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

109

Amino Acids

12.73

Weight (kDa)

6.99

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccII	CGCG	2 cut(s)	63, 192
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	3 cut(s)	4, 17, 31
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	197, 218, 229
AluBI	AGCT	4 cut(s)	43, 56, 142, 221
AluI	AGCT	4 cut(s)	43, 56, 142, 221
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	4, 17, 31
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	14, 176
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	11
BmsI	GCATC	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	2 cut(s)	63, 192
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	172
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	9, 36
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	63, 192
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	3 cut(s)	4, 17, 31
BspQI	GCTCTTC	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	237
BssMI	GATC	2 cut(s)	9, 36
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	2 cut(s)	63, 168
BstAUI	TGTACA	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	84
BstFNI	CGCG	2 cut(s)	63, 192
BstKTI	GATC	2 cut(s)	12, 39
BstMBI	GATC	2 cut(s)	9, 36
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstUI	CGCG	2 cut(s)	63, 192
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	238
CviJI	RGCY	6 cut(s)	43, 56, 88, 142, 172, 221
CviKI_1	RGCY	6 cut(s)	43, 56, 88, 142, 172, 221
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	11, 38
DpnII	GATC	2 cut(s)	9, 36
Eam1104I	CTCTTC	2 cut(s)	63, 168
EarI	CTCTTC	2 cut(s)	63, 168
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	167
EcoICRI	GAGCTC	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	58
FaqI	GGGAC	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	2 cut(s)	14, 176
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	119
Hpy188III	TCNNGA	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	25, 145, 248, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	9, 36
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	53, 274
LpnPI	CCDG	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	14, 176
MaeIII	GTNAC	2 cut(s)	107, 131
MalI	GATC	2 cut(s)	11, 38
MboI	GATC	2 cut(s)	9, 36
MboII	GAAGA	2 cut(s)	50, 155
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	3 cut(s)	98, 99, 183
MseI	TTAA	3 cut(s)	123, 303, 328
MvnI	CGCG	2 cut(s)	63, 192
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	9, 36
NlaIV	GGNNCC	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	9
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	123, 303, 328
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	9, 36
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	6 cut(s)	45, 58, 109, 144, 223, 309
SfaNI	GCATC	1 cut(s)	235
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	14, 176
SstI	GAGCTC	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	29
TatI	WGTACW	1 cut(s)	237
Tru1I	TTAA	3 cut(s)	123, 303, 328
Tru9I	TTAA	3 cut(s)	123, 303, 328
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	59, 327
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	175
XspI	CTAG	2 cut(s)	14, 176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.