Rroxscaffold_6G00423240

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000565
Physical Location & Seq
Forward (+)
44312146 .. 44322588
10443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423240.1

Sequence Viewer

Length: 351 bp
ATGAAGGAGCAATATGCCCGAATCAAGATTTATGGACGCCCTTGGATGAGAACTGAGTTTGGAGTTGCTCGTTCAATTCAATTGAGATTTCAACTTGTAACTATCAACAACTCTCGGAACGTGAAGTTTGAGAAAAAGAATGTAGAACAAAGTCCAAGCAATGGTTTACTGGACTTATTCCGCACACCCAGCTCCGTTCGCTTTTGTCCCGTCACCGATGCACGCACTCGCATCCAAACCGTTATAGGGATGTTGACAAAGTTCGAGACAAAGAGGCCGTGGATCCTCACGAGTCCGCACCGTGGTGTGATCCGGCTATGGGACTACCGTATGGGGACTCTTACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPI_C Coatomer_WDAD WD40

Protein Analysis

116

Amino Acids

13.69

Weight (kDa)

10.92

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 161
AciI CCGC 2 cut(s) 181, 296
AclWI GGATC 3 cut(s) 277, 290, 304
AcyI GRCGYC 1 cut(s) 37
AfiI CCNNNNNNNGG 4 cut(s) 161, 246, 302, 319
AgsI TTSAA 3 cut(s) 75, 80, 92
AleI CACNNNNGTG 1 cut(s) 303
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 3 cut(s) 277, 290, 304
AoxI GGCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 205
BamHI GGATCC 1 cut(s) 282
BauI CACGAG 1 cut(s) 289
BceAI ACGGC 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 284
BmsI GCATC 2 cut(s) 208, 240
BsaHI GRCGYC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 41, 278, 301
Bsc4I CCNNNNNNNGG 4 cut(s) 161, 246, 302, 319
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 166
BseDI CCNNGG 3 cut(s) 41, 278, 301
BseGI GGATG 3 cut(s) 51, 231, 255
BseLI CCNNNNNNNGG 4 cut(s) 161, 246, 302, 319
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 313
BslFI GGGAC 2 cut(s) 192, 335
BslI CCNNNNNNNGG 4 cut(s) 161, 246, 302, 319
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 192, 335
BsnI GGCC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 282, 309
BspACI CCGC 2 cut(s) 181, 296
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 3 cut(s) 277, 290, 304
BsrDI GCAATG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 41, 278, 301
BssMI GATC 2 cut(s) 282, 309
BssNI GRCGYC 1 cut(s) 37
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 241, 302, 329
BstACI GRCGYC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 2 cut(s) 278, 301
BstF5I GGATG 3 cut(s) 51, 231, 255
BstKTI GATC 2 cut(s) 285, 312
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 282, 309
BstMWI GCNNNNNNNGC 2 cut(s) 189, 198
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 277
BtgI CCRYGG 2 cut(s) 278, 301
BtsCI GGATG 3 cut(s) 51, 231, 255
Cac8I GCNNGC 1 cut(s) 223
CseI GACGC 1 cut(s) 45
CviJI RGCY 3 cut(s) 192, 277, 316
CviKI_1 RGCY 3 cut(s) 192, 277, 316
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 284, 311
DpnII GATC 2 cut(s) 282, 309
Eco130I CCWWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaiI YATR 5 cut(s) 15, 33, 245, 319, 332
FaqI GGGAC 2 cut(s) 192, 335
FokI GGATG 3 cut(s) 58, 218, 262
GsaI CCCAGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 277
HapII CCGG 1 cut(s) 313
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 3 cut(s) 21, 292, 337
HpaII CCGG 1 cut(s) 313
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 167, 255
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 3 cut(s) 25, 265, 289
Hpy8I GTNNAC 2 cut(s) 167, 255
HpyCH4III ACNGT 3 cut(s) 241, 302, 329
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 198
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 282, 309
LmnI GCTCC 2 cut(s) 7, 197
LpnPI CCDG 3 cut(s) 155, 202, 326
LweI GCATC 2 cut(s) 208, 240
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 97, 211
MalI GATC 2 cut(s) 284, 311
MboI GATC 2 cut(s) 282, 309
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 282
MluCI AATT 2 cut(s) 75, 80
MlyI GAGTC 2 cut(s) 301, 331
MnlI CCTC 2 cut(s) 267, 296
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 189, 198
NdeII GATC 2 cut(s) 282, 309
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 303
PfeI GAWTC 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 161
PleI GAGTC 2 cut(s) 300, 331
PpsI GAGTC 2 cut(s) 300, 331
PspFI CCCAGC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 303
Sau3AI GATC 2 cut(s) 282, 309
SchI GAGTC 2 cut(s) 301, 331
SetI ASST 2 cut(s) 123, 194
SfaNI GCATC 2 cut(s) 208, 240
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 2 cut(s) 75, 80
SsiI CCGC 2 cut(s) 181, 296
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 241, 302, 329
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 75, 80
TfiI GAWTC 1 cut(s) 21
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.