RchiOBHm_Chr1g0329691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000565
Physical Location & Seq
Forward (+)
19436481 .. 19438065
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55896

Sequence Viewer

Length: 150 bp
ATGAGCGGAGTACTGAAAACTCAACAGATCGGATCGGTGCAGACCGAGTCCCGAGTTGTAGCCACTTTCGACGATTGCGAAGCCGCCGCAGCCTCAGAACTTCGATTCGCCGCCGATGACGTCTTGAGTTCTTCCTATCCACCGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.15

Weight (kDa)

4.14

Isoelectric Point (pI)

60.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 5 cut(s) 6, 84, 87, 111, 143
AclWI GGATC 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 1 cut(s) 12
AlwI GGATC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 51
BbvI GCAGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 84, 87, 90, 111
BlsI GCNGC 4 cut(s) 85, 88, 91, 112
BmcAI AGTACT 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 145
BsaHI GRCGYC 1 cut(s) 120
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 2 cut(s) 27, 32
BspACI CCGC 5 cut(s) 6, 84, 87, 111, 143
BspCNI CTCAG 1 cut(s) 107
BspPI GGATC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 6
BssMI GATC 2 cut(s) 27, 32
BssNI GRCGYC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 94
BstKTI GATC 2 cut(s) 30, 35
BstMBI GATC 2 cut(s) 27, 32
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 147
CviJI RGCY 3 cut(s) 62, 83, 92
CviKI_1 RGCY 3 cut(s) 62, 83, 92
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 94
DpnI GATC 2 cut(s) 29, 34
DpnII GATC 2 cut(s) 27, 32
Eco88I CYCGRG 1 cut(s) 51
FaeI CATG 1 cut(s) 150
FaiI YATR 1 cut(s) 148
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 146
Fnu4HI GCNGC 4 cut(s) 84, 87, 90, 111
Fsp4HI GCNGC 4 cut(s) 84, 87, 90, 111
GluI GCNGC 4 cut(s) 84, 87, 90, 111
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 150
HinfI GANTC 2 cut(s) 47, 105
Hpy188I TCNGA 2 cut(s) 32, 97
Hpy188III TCNNGA 2 cut(s) 51, 124
Hpy99I CGWCG 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 27, 32
Lsp1109I GCAGC 1 cut(s) 101
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 29, 34
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 27, 32
MboII GAAGA 1 cut(s) 123
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 1 cut(s) 103
MslI CAYNNNNRTG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 27, 32
NlaIII CATG 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 105
PflFI GACNNNGTC 1 cut(s) 46
PkrI GCNGC 4 cut(s) 85, 88, 91, 112
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 46
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 145
SatI GCNGC 4 cut(s) 84, 87, 90, 111
Sau3AI GATC 2 cut(s) 27, 32
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 1 cut(s) 56
SetI ASST 1 cut(s) 123
SgeI CNNG 4 cut(s) 58, 63, 65, 136
SmiMI CAYNNNNRTG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
SsiI CCGC 5 cut(s) 6, 84, 87, 111, 143
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 69, 103
TaqII GACCGA 1 cut(s) 59
TatI WGTACW 1 cut(s) 10
TauI GCSGC 3 cut(s) 86, 89, 113
TfiI GAWTC 1 cut(s) 105
TseI GCWGC 1 cut(s) 89
Tth111I GACNNNGTC 1 cut(s) 46
ZraI GACGTC 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.