Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

35789486 .. 35790954

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024432

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCCGTCGGAATCATCATGCTAGAAATGCTGTCCGCGCTCGCGTTTTTTCTCTATTGCCACCGAGTCAAGCACCAATCGGAAACTCATAAGCTCGTTAATGGCGGAGGGAGCAGCTCGCAGTGGTTCGCCGATAATTACAGAGCGGTGCCTTCGAGCTTCCTCTATATCGGCACCTTAGAGCAGAGCCACAACTCCACGAGTAGCGACGCCATGAGCGGAGTTCTGAAAACTCAACATATCGGATCGGTGCAAGCCGAGTCCCGAGTTGCAGCCACTTTAATCGAGGTTATGAGTTCTGAAACTCAGAACCTCGATTCGCCGCCGATGACACTTGTTAGAGCCATGATTGATTTCTCCCTTATTGATTCTGAGACCGAGATTGAAGCCTCTCAAGTTACCTCCAAACCAAAGGCAAAAGCCAACTGCCCTTCCAATCCACCTGCACCTGATTTTCCCTTGATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

157

Amino Acids

16.92

Weight (kDa)

5.25

Isoelectric Point (pI)

63.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	451
AccB1I	GGYRCC	2 cut(s)	148, 173
AccBSI	CCGCTC	2 cut(s)	146, 219
AccII	CGCG	2 cut(s)	38, 44
AciI	CCGC	5 cut(s)	36, 105, 146, 219, 323
AclWI	GGATC	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	386
AluBI	AGCT	3 cut(s)	94, 117, 159
AluI	AGCT	3 cut(s)	94, 117, 159
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	114, 272
AspLEI	GCGC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	148, 173
BauI	CACGAG	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	126, 284
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	3 cut(s)	115, 273, 323
BlsI	GCNGC	3 cut(s)	116, 274, 324
BmeT110I	CYCGRG	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	150, 175
BpuEI	CTTGAG	1 cut(s)	378
Bsa29I	ATCGAT	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	368
BseCI	ATCGAT	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	320, 363
BseXI	GCAGC	2 cut(s)	126, 284
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	2 cut(s)	38, 44
BshNI	GGYRCC	2 cut(s)	148, 173
BshVI	ATCGAT	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	247
Bso31I	GGTCTC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	245, 462
BspACI	CCGC	5 cut(s)	36, 105, 146, 219, 323
BspCNI	CTCAG	2 cut(s)	319, 364
BspDI	ATCGAT	1 cut(s)	465
BspFNI	CGCG	2 cut(s)	38, 44
BspLI	GGNNCC	2 cut(s)	150, 175
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	2 cut(s)	148, 173
BspTNI	GGTCTC	1 cut(s)	368
BsrBI	CCGCTC	2 cut(s)	146, 219
BssMI	GATC	2 cut(s)	245, 462
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	3 cut(s)	42, 119, 255
BstDEI	CTNAG	3 cut(s)	178, 306, 372
BstFNI	CGCG	2 cut(s)	38, 44
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	248, 465
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	2 cut(s)	245, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 37, 111
BstUI	CGCG	2 cut(s)	38, 44
BstV1I	GCAGC	2 cut(s)	126, 284
Bsu15I	ATCGAT	1 cut(s)	465
BsuTUI	ATCGAT	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	42, 119, 255
CfoI	GCGC	1 cut(s)	40
ClaI	ATCGAT	1 cut(s)	465
CseI	GACGC	1 cut(s)	218
CviAII	CATG	3 cut(s)	19, 214, 346
CviJI	RGCY	9 cut(s)	94, 117, 159, 189, 257, 275, 344, 389, 422
CviKI_1	RGCY	9 cut(s)	94, 117, 159, 189, 257, 275, 344, 389, 422
DdeI	CTNAG	3 cut(s)	178, 306, 372
DpnI	GATC	2 cut(s)	247, 464
DpnII	GATC	2 cut(s)	245, 462
EciI	GGCGGA	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	264
FaeI	CATG	3 cut(s)	22, 217, 349
FaiI	YATR	7 cut(s)	20, 90, 168, 215, 240, 293, 347
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	18, 213, 345
Fnu4HI	GCNGC	3 cut(s)	115, 273, 323
Fsp4HI	GCNGC	3 cut(s)	115, 273, 323
FspBI	CTAG	1 cut(s)	23
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	115, 273, 323
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	22, 217, 349
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	5 cut(s)	12, 66, 260, 317, 368
Hpy188I	TCNGA	7 cut(s)	11, 82, 228, 245, 301, 309, 373
Hpy188III	TCNNGA	1 cut(s)	264
Hpy99I	CGWCG	2 cut(s)	11, 212
HpyAV	CCTTC	2 cut(s)	162, 441
HpyCH4V	TGCA	3 cut(s)	253, 272, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 37, 111
HpyF3I	CTNAG	3 cut(s)	178, 306, 372
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	22, 217, 349
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	245, 462
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	2 cut(s)	456, 462
Lsp1109I	GCAGC	2 cut(s)	126, 284
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	2 cut(s)	247, 464
MbiI	CCGCTC	2 cut(s)	146, 219
MboI	GATC	2 cut(s)	245, 462
MluCI	AATT	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	75, 269
MnlI	CCTC	6 cut(s)	101, 173, 280, 323, 400, 412
MseI	TTAA	2 cut(s)	99, 281
MvnI	CGCG	2 cut(s)	38, 44
MwoI	GCNNNNNNNGC	3 cut(s)	28, 37, 111
NdeII	GATC	2 cut(s)	245, 462
NlaIII	CATG	3 cut(s)	22, 217, 349
NlaIV	GGNNCC	2 cut(s)	150, 175
NmeAIII	GCCGAG	1 cut(s)	283
PaqCI	CACCTGC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	12, 317, 368
PkrI	GCNGC	3 cut(s)	116, 274, 324
PleI	GAGTC	2 cut(s)	74, 268
PpsI	GAGTC	2 cut(s)	74, 268
PspN4I	GGNNCC	2 cut(s)	150, 175
SaqAI	TTAA	2 cut(s)	99, 281
SatI	GCNGC	3 cut(s)	115, 273, 323
Sau3AI	GATC	2 cut(s)	245, 462
SchI	GAGTC	2 cut(s)	75, 269
SetI	ASST	9 cut(s)	96, 119, 161, 179, 291, 315, 404, 445, 451
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	36, 105, 146, 219, 323
SspMI	CTAG	1 cut(s)	23
TaqI	TCGA	4 cut(s)	155, 285, 315, 465
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	3 cut(s)	12, 317, 368
Tru1I	TTAA	2 cut(s)	99, 281
Tru9I	TTAA	2 cut(s)	99, 281
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	2 cut(s)	114, 272
TspRI	CASTG	1 cut(s)	128
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.