RchiOBHm_Chr4g0405101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000565
Physical Location & Seq
Reverse (-)
25201528 .. 25201713
186 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37661

Sequence Viewer

Length: 186 bp
ATGCTTTTGTTGTTCATTCTGTTCCCGTTGCTGTTGCTGCTTTCTGGTTTTGTTGTTTGCTCTGCATGCATCGATTGGCTCTTCTTTGCCTATTTGGGTGAGTTGCTTTCTATTTTTTTTCTTTTTACTCTTGAATTTGTTTTTAGCCTTTTTAGTTCTTCATATTTTTTGTTTGAAACCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

7.16

Weight (kDa)

4.05

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 134
AgsI TTSAA 2 cut(s) 134, 176
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 110
BbvI GCAGC 1 cut(s) 24
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmsI GCATC 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 72
BseXI GCAGC 1 cut(s) 24
BshVI ATCGAT 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 2 cut(s) 37, 66
BstNSI RCATGY 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 67
ClaI ATCGAT 1 cut(s) 72
CviAII CATG 1 cut(s) 66
CviJI RGCY 2 cut(s) 79, 147
CviKI_1 RGCY 2 cut(s) 79, 147
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 71
FaeI CATG 1 cut(s) 69
FaiI YATR 2 cut(s) 67, 163
FatI CATG 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspEI CC 8 cut(s) 30, 38, 39, 61, 80, 81, 103, 161
GluI GCNGC 1 cut(s) 38
Hin1II CATG 1 cut(s) 69
HphI GGTGA 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 65, 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 66
Hsp92II CATG 1 cut(s) 69
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 73, 150
MluCI AATT 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 37, 66
NlaIII CATG 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 1 cut(s) 69
PaeI GCATGC 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 1 cut(s) 38
SetI ASST 1 cut(s) 182
SfaNI GCATC 1 cut(s) 78
SgeI CNNG 4 cut(s) 37, 57, 78, 143
SphI GCATGC 1 cut(s) 69
Sse9I AATT 1 cut(s) 134
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 134
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 4, 150
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.