Rw1G010610

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
23771465 .. 23772449
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010610.1

Sequence Viewer

Length: 390 bp
ATGGATATGTTAGCCTCAATTATAATACAAGAGATCTTTGAGACTACTGGATGCATTGCAAGTGTTGGCATAGCTAGAAATATGCTCATGCCTCGCCTTACAACAAGAACTGCTAAACCAGATGGTCAATGCAACATTCCTCCCAAAAGGGGGCATGATTATTTATATGAACTTCCCATCAAGACGCTTCTAGGAATAGGACACGTTTTAGAGGAGAAGTTGAAGAAGCAAAATGTTTTGACGTGTGGACAGTTGCGCATGATTCCTAAGCCTTGCAATGTGGTTTGCAGTAGCTATTTTTATGCTGGTGGATGTGTATGGTTGGCACGTTTATCTTTGGCTATCCTATGTTCCACTTTTGGTCATTCTGGTCCTAGGAACCAAACTTGA

Protein Analysis

129

Amino Acids

14.24

Weight (kDa)

9.08

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
Acc16I TGCGCA 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 149, 150
AflIII ACRYGT 2 cut(s) 202, 242
AgsI TTSAA 1 cut(s) 223
AjiI CACGTC 1 cut(s) 243
AluBI AGCT 2 cut(s) 74, 294
AluI AGCT 2 cut(s) 74, 294
Alw26I GTCTC 1 cut(s) 35
AspA2I CCTAGG 1 cut(s) 374
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 371
AvaII GGWCC 1 cut(s) 371
AvrII CCTAGG 1 cut(s) 374
BccI CCATC 2 cut(s) 116, 185
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 3 cut(s) 75, 191, 375
BglII AGATCT 1 cut(s) 33
BlnI CCTAGG 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 150
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 54, 283
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 2 cut(s) 56, 317
BseLI CCNNNNNNNGG 2 cut(s) 149, 150
BseMI GCAATG 2 cut(s) 54, 283
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 149, 150
BsmAI GTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 54, 283
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 56, 317
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BtrI CACGTC 1 cut(s) 243
BtsCI GGATG 2 cut(s) 56, 317
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 193
CviAII CATG 3 cut(s) 88, 155, 259
CviJI RGCY 5 cut(s) 14, 74, 271, 294, 341
CviKI_1 RGCY 5 cut(s) 14, 74, 271, 294, 341
DdeI CTNAG 1 cut(s) 267
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 3 cut(s) 91, 158, 262
FatI CATG 3 cut(s) 87, 154, 258
FokI GGATG 2 cut(s) 63, 324
FspBI CTAG 3 cut(s) 75, 191, 375
FspI TGCGCA 1 cut(s) 257
GlaI GCGC 1 cut(s) 257
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 258
Hin1II CATG 3 cut(s) 91, 158, 262
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 248
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 3 cut(s) 204, 242, 328
HpyCH4V TGCA 5 cut(s) 54, 59, 132, 276, 288
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 3 cut(s) 204, 242, 328
Hsp92II CATG 3 cut(s) 91, 158, 262
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 33, 132, 291, 354
LweI GCATC 1 cut(s) 41
MaeI CTAG 3 cut(s) 75, 191, 375
MaeII ACGT 3 cut(s) 204, 242, 328
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 33
MluCI AATT 1 cut(s) 18
MnlI CCTC 4 cut(s) 25, 102, 150, 205
Mph1103I ATGCAT 1 cut(s) 56
NdeII GATC 1 cut(s) 33
NlaIII CATG 3 cut(s) 91, 158, 262
NlaIV GGNNCC 1 cut(s) 380
NsbI TGCGCA 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 262
PsiI TTATAA 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 33
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 371
SetI ASST 5 cut(s) 76, 207, 245, 296, 331
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 371
Sse9I AATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 75, 191, 375
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 3 cut(s) 207, 245, 331
TasI AATT 1 cut(s) 18
TfiI GAWTC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 371
XmaJI CCTAGG 1 cut(s) 374
XspI CTAG 3 cut(s) 75, 191, 375
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.