Rroxscaffold_6G00409240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000565
Physical Location & Seq
Forward (+)
31778271 .. 31778814
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409240.1

Sequence Viewer

Length: 201 bp
ATGTTCGATTCTGCATCTGCAACCGGAGAGGGTCTCTCTCGCCCTCGGCGAACGAGCTCACAAGCAATTCGAAAGTCCAGAGAGCTTCATCTGCGCCTGAAGACGATTCAGCTCTCGCAGGCTTCGCAGATCGGAAGCACCATACAAATTCAAAGGTACGCCTCAATCTTATTTTGTCATAATCGGAACTTGCTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.46

Weight (kDa)

11.55

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 3 cut(s) 57, 85, 112
AluI AGCT 3 cut(s) 57, 85, 112
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 1 cut(s) 96
AsuII TTCGAA 1 cut(s) 70
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 38
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 107
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 20, 52
Bpu14I TTCGAA 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 120
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 91, 124
BstV2I GAAGAC 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 157
CviJI RGCY 4 cut(s) 57, 85, 112, 122
CviKI_1 RGCY 4 cut(s) 57, 85, 112, 122
CviQI GTAC 1 cut(s) 157
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaiI YATR 2 cut(s) 143, 180
FriOI GRGCYC 1 cut(s) 59
GlaI GCGC 1 cut(s) 95
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 96
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 8, 106
HpaII CCGG 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 134, 186
Hpy188III TCNNGA 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 14, 20
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 124
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 37, 91, 104, 110
LweI GCATC 1 cut(s) 23
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 66, 147
MnlI CCTC 3 cut(s) 22, 54, 172
MspI CCGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 91, 124
NdeII GATC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 25
NspV TTCGAA 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 2 cut(s) 8, 106
Psp124BI GAGCTC 1 cut(s) 59
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SacI GAGCTC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 59, 87, 114, 158
SfaNI GCATC 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 70
SgeI CNNG 9 cut(s) 36, 51, 57, 66, 74, 90, 109, 127, 131
Sse9I AATT 2 cut(s) 66, 147
SstI GAGCTC 1 cut(s) 59
TaqI TCGA 2 cut(s) 6, 70
TasI AATT 2 cut(s) 66, 147
TfiI GAWTC 2 cut(s) 8, 106
TspDTI ATGAA 1 cut(s) 77
XapI RAATTY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.