RLG00000000812

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
5856344 .. 5858457
2114 bp
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UTR
Exon/CDS
Intron
RLM00000000812

Sequence Viewer

Length: 666 bp
ATGTTTGTTGGAGATGTTATGGCTCTTTGTCCACATCTTGTCATTCTTCCTTATGATTTTGAAGTGTATGAGGAGGTAGCTAATCAGTTCTATTACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGACGAAGCATTTTTAGATGTCACATTCTTGGAAGGGGTAGATATGGATATGTTAGCCTCATTTATAATACAAGAGATTTTTGAGACTACTGGATGCATTGCAAGTGCTGGTATAGCTAGAAATATGCTCATGGCTCGCCTTACAACAAGAACTGCTAAACCAGATGATCAATGCAACATTCCTCCCAAAAGGGAGAAGTTGAAGAAGCGAAATGTTTTGACGTGTGGACAGTTGCTCATAATTCCTAAGCCTTGCAATGTGGTTTGCAGTAGCTATTTTTATGCTGGTGGATGTGTATGGTTGGCATATATATCTTTGGCTATCCTATGTTCCACTTTTGAGATGGGTTCACAATTCAAGGTTAAGATACTAGAAGATAATATGGCTGGCATACTAAAGCAATGGCACAGAGATGTGAGGAGGAAAAGGAAGAAGGAAAAACAAGAATCACAATCGTGCAGCACATCTTTTTCCATGGAATGGAGCTCCATGAGGCACAACTTTCGTGGTCATCAGGCAACACCCTGA

Protein Analysis

222

Amino Acids

25.3

Weight (kDa)

8.46

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 1 - 95 1.3e-19 impB/mucB/samB family
Mlo PF03094 145 - 202 6.8e-07 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB7I CCANNNNNTGG 1 cut(s) 618
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 618
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 62, 340, 496
AjiI CACGTC 1 cut(s) 360
AleI CACNNNNGTG 1 cut(s) 592
AluBI AGCT 5 cut(s) 80, 135, 254, 411, 624
AluI AGCT 5 cut(s) 80, 135, 254, 411, 624
Alw21I GWGCWC 1 cut(s) 626
Alw26I GTCTC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 597
BanII GRGCYC 1 cut(s) 626
Bbv12I GWGCWC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 609
BccI CCATC 1 cut(s) 475
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 2 cut(s) 255, 509
BfmI CTRYAG 1 cut(s) 112
BisI GCNGC 1 cut(s) 598
BlsI GCNGC 1 cut(s) 599
BmgBI CACGTC 1 cut(s) 360
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 612
Bsc4I CCNNNNNNNGG 1 cut(s) 618
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 3 cut(s) 234, 400, 545
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 2 cut(s) 236, 434
BseLI CCNNNNNNNGG 1 cut(s) 618
BseMI GCAATG 3 cut(s) 234, 400, 545
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 86, 571
BseXI GCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 626
BslI CCNNNNNNNGG 1 cut(s) 618
BsmAI GTCTC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 1 cut(s) 304
Bsp19I CCATGG 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 116
BsrDI GCAATG 3 cut(s) 234, 400, 545
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 369
BstC8I GCNNGC 2 cut(s) 274, 526
BstDEI CTNAG 1 cut(s) 384
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 236, 434
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 360
BtsCI GGATG 2 cut(s) 236, 434
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 274, 526
Csp6I GTAC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 625, 660
CviAII CATG 3 cut(s) 268, 613, 628
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 384
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 612
Eco24I GRGCYC 1 cut(s) 626
Eco53kI GAGCTC 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 624
EcoT14I CCWWGG 1 cut(s) 612
EcoT22I ATGCAT 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 626
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 3 cut(s) 271, 616, 631
FatI CATG 3 cut(s) 267, 612, 627
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 598
FokI GGATG 2 cut(s) 243, 441
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 1 cut(s) 598
FspBI CTAG 2 cut(s) 255, 509
GluI GCNGC 1 cut(s) 598
Hin1II CATG 3 cut(s) 271, 616, 631
HinfI GANTC 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 32, 365, 488
Hpy8I GTNNAC 3 cut(s) 32, 365, 488
HpyAV CCTTC 2 cut(s) 164, 565
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 8 cut(s) 103, 114, 234, 239, 312, 393, 405, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 3 cut(s) 271, 616, 631
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 621, 629
LpnPI CCDG 6 cut(s) 213, 231, 312, 408, 510, 638
Lsp1109I GCAGC 1 cut(s) 609
LweI GCATC 1 cut(s) 221
MaeI CTAG 2 cut(s) 255, 509
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 2 cut(s) 137, 157
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 4 cut(s) 38, 352, 524, 580
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 2 cut(s) 378, 491
MnlI CCTC 7 cut(s) 64, 67, 205, 330, 549, 552, 624
Mph1103I ATGCAT 1 cut(s) 236
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 2 cut(s) 549, 592
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 612
NdeII GATC 1 cut(s) 304
NlaIII CATG 3 cut(s) 271, 616, 631
NmuCI GTSAC 2 cut(s) 137, 157
NsiI ATGCAT 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 592
PfeI GAWTC 1 cut(s) 584
PflMI CCANNNNNTGG 1 cut(s) 618
PkrI GCNGC 1 cut(s) 599
PsiI TTATAA 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 626
PstI CTGCAG 1 cut(s) 116
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 549, 592
SacI GAGCTC 1 cut(s) 626
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 598
Sau3AI GATC 1 cut(s) 304
SduI GDGCHC 1 cut(s) 626
SetI ASST 8 cut(s) 78, 82, 137, 256, 362, 413, 501, 626
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 112
SmiMI CAYNNNNRTG 2 cut(s) 549, 592
Sse9I AATT 2 cut(s) 378, 491
SspMI CTAG 2 cut(s) 255, 509
SstI GAGCTC 1 cut(s) 626
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 369
TaiI ACGT 1 cut(s) 362
TasI AATT 2 cut(s) 378, 491
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 2 cut(s) 137, 157
TseI GCWGC 1 cut(s) 597
Tsp45I GTSAC 2 cut(s) 137, 157
TspRI CASTG 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 2 cut(s) 255, 509
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.