Rh3BG236900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000565
Physical Location & Seq
Forward (+)
22205632 .. 22206973
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG236900.1

Sequence Viewer

Length: 228 bp
ATGAACAATGATGGTGGTGGCGGAGGGAATGTTGGACTTACTCACGGCATCAATCTCTTAAATTGGGCGTTGCAATTACTTGAGTGGGCGTTGTGGGTTATCAACCTCGGCATAGCCACAATTGAAGGTCACAAGAATGTACGAGTCAACGTTAAAGAGGCTGTGTTGGCGATGCGTACTAGCATGGCTTTGATCATGAGTCGTCTGCCCAGATTGCAGGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.2

Weight (kDa)

9.69

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AclI AACGTT 1 cut(s) 150
AfaI GTAC 2 cut(s) 141, 178
AgsI TTSAA 1 cut(s) 125
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 61
BclI TGATCA 1 cut(s) 192
BfaI CTAG 1 cut(s) 180
BmsI GCATC 2 cut(s) 57, 162
BpuEI CTTGAG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
BseDI CCNNGG 1 cut(s) 106
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 1 cut(s) 21
BspHI TCATGA 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 1 cut(s) 192
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 167, 214
BtgZI GCGATG 1 cut(s) 185
CciI TCATGA 1 cut(s) 195
Csp6I GTAC 2 cut(s) 140, 177
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 2 cut(s) 184, 196
CviJI RGCY 3 cut(s) 116, 161, 188
CviKI_1 RGCY 3 cut(s) 116, 161, 188
CviQI GTAC 2 cut(s) 140, 177
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 36
FaeI CATG 2 cut(s) 187, 199
FaiI YATR 3 cut(s) 113, 185, 197
FatI CATG 2 cut(s) 183, 195
FbaI TGATCA 1 cut(s) 192
FspBI CTAG 1 cut(s) 180
Hin1II CATG 2 cut(s) 187, 199
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 144, 199
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 119
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 73, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 214
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 187, 199
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 2 cut(s) 203, 223
LweI GCATC 2 cut(s) 57, 162
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MfeI CAATTG 1 cut(s) 120
MluCI AATT 3 cut(s) 61, 74, 120
MlyI GAGTC 2 cut(s) 153, 208
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 3 cut(s) 17, 116, 151
MseI TTAA 2 cut(s) 59, 153
MslI CAYNNNNRTG 1 cut(s) 135
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 167, 214
NdeII GATC 1 cut(s) 192
NlaIII CATG 2 cut(s) 187, 199
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 128
PagI TCATGA 1 cut(s) 195
PleI GAGTC 2 cut(s) 152, 207
PpsI GAGTC 2 cut(s) 152, 207
Psp1406I AACGTT 1 cut(s) 150
RsaI GTAC 2 cut(s) 141, 178
RsaNI GTAC 2 cut(s) 140, 177
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 2 cut(s) 59, 153
Sau3AI GATC 1 cut(s) 192
SchI GAGTC 2 cut(s) 153, 208
SetI ASST 3 cut(s) 108, 130, 153
SfaNI GCATC 2 cut(s) 57, 162
SgeI CNNG 9 cut(s) 56, 92, 119, 145, 155, 192, 196, 208, 222
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 3 cut(s) 61, 74, 120
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 180
TaiI ACGT 1 cut(s) 153
TasI AATT 3 cut(s) 61, 74, 120
Tru1I TTAA 2 cut(s) 59, 153
Tru9I TTAA 2 cut(s) 59, 153
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.