Rorug06G0059000

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
7940295 .. 7941050
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0059000.1

Sequence Viewer

Length: 756 bp
ATGACTCCACCAACTCTGCAACTGTTGGACCCACAAATCCAGCACTCTCCAGATCTACAAATTCAGCAACCTCTGGATCCACAAATCCAACAACGGATCGAGGATGAAGGAAGCAACACAGCAGCCGGGAGTAGTGCCATCACGCCAATCAGGCCGACCAGTATCCGGTGGGCTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTATGACAAGGCCTTTAAATACCCAACCCCAAAGAAAATTCAAGAGATCTGTCTCCATCTGAAACAGTATGGACAGGTTGAGGGCATGAACGTTTATTTTTGGTTCCAGAACCTCAGAGCTCGAGACAGACAGAAGATGAGGTTAATTCAGAACATTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGATCCACTAGTTCTACTGATGATGGTGGGTTTATTGATGTCAATTTTGGGCCACGGGTTGACTGCAGTGTTGACCGGTATTCCTCCTCACCCTTCAACACTAATACTAGTACTTACTCCTTTGGCACAAAAGAAGGACAAACTTTCATGGAACAGCGAGGGGAAGATCACCAGGAGATTGAAACTCTTCCTCTGTTTCCCATGCACAGTGAAGACATCTTTAGCGACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTGTTCCGGTGGCTCGGGCGGCTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGAAGCTGCTGACTTGGCTTAG

Protein Analysis

251

Amino Acids

27.93

Weight (kDa)

4.85

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 56 - 115 1.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 378, 654, 684
AclI AACGTT 1 cut(s) 303
AclWI GGATC 6 cut(s) 71, 84, 104, 388, 396, 409
AcsI RAATTY 2 cut(s) 60, 249
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 165
AgeI ACCGGT 1 cut(s) 474
AgsI TTSAA 3 cut(s) 254, 496, 581
AhlI ACTAGT 2 cut(s) 407, 506
AjnI CCWGG 2 cut(s) 201, 570
AluBI AGCT 4 cut(s) 208, 332, 718, 740
AluI AGCT 4 cut(s) 208, 332, 718, 740
Alw21I GWGCWC 2 cut(s) 334, 720
Alw26I GTCTC 2 cut(s) 269, 330
AlwI GGATC 6 cut(s) 71, 84, 104, 388, 396, 409
Ama87I CYCGRG 2 cut(s) 333, 679
AoxI GGCC 3 cut(s) 152, 222, 449
ApeKI GCWGC 2 cut(s) 122, 740
ApoI RAATTY 2 cut(s) 60, 249
AsiGI ACCGGT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 585
AspS9I GGNCC 2 cut(s) 28, 449
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 480, 560
AvaI CYCGRG 2 cut(s) 333, 679
AvaII GGWCC 1 cut(s) 28
BamHI GGATCC 2 cut(s) 76, 401
BanII GRGCYC 3 cut(s) 175, 334, 720
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 2 cut(s) 334, 720
BbvI GCAGC 2 cut(s) 134, 727
BccI CCATC 4 cut(s) 146, 276, 416, 739
BciT130I CCWGG 2 cut(s) 203, 572
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 269, 330
BcuI ACTAGT 2 cut(s) 407, 506
BfaI CTAG 2 cut(s) 408, 507
BfmI CTRYAG 1 cut(s) 463
BfuI GTATCC 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 151
BglII AGATCT 2 cut(s) 52, 258
BisI GCNGC 4 cut(s) 123, 655, 685, 741
BlpI GCTNAGC 1 cut(s) 719
BlsI GCNGC 4 cut(s) 124, 656, 686, 742
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 3 cut(s) 127, 203, 572
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 2 cut(s) 333, 679
BmgT120I GGNCC 2 cut(s) 28, 449
BmiI GGNNCC 5 cut(s) 30, 78, 174, 317, 403
BmrFI CCNGG 3 cut(s) 127, 203, 572
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 2 cut(s) 33, 185
Bpu1102I GCTNAGC 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 734
BpuMI CCSGG 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 452, 642
BsaWI WCCGGW 3 cut(s) 165, 474, 671
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 2 cut(s) 203, 572
BseDI CCNNGG 2 cut(s) 452, 642
BseGI GGATG 2 cut(s) 109, 731
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 340, 733
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 475
BseXI GCAGC 2 cut(s) 134, 727
BshFI GGCC 3 cut(s) 154, 224, 451
BshTI ACCGGT 1 cut(s) 474
BsiHKAI GWGCWC 2 cut(s) 334, 720
BsiHKCI CYCGRG 2 cut(s) 333, 679
BsiSI CCGG 4 cut(s) 126, 166, 475, 672
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 269, 330
BsnI GGCC 3 cut(s) 154, 224, 451
BsoBI CYCGRG 2 cut(s) 333, 679
Bsp1286I GDGCHC 3 cut(s) 175, 334, 720
Bsp143I GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
Bsp1720I GCTNAGC 1 cut(s) 719
BspACI CCGC 3 cut(s) 378, 654, 684
BspANI GGCC 3 cut(s) 154, 224, 451
BspCNI CTCAG 2 cut(s) 339, 732
BspLI GGNNCC 5 cut(s) 30, 78, 174, 317, 403
BspMAI CTGCAG 1 cut(s) 467
BspPI GGATC 6 cut(s) 71, 84, 104, 388, 396, 409
BsrFI RCCGGY 1 cut(s) 474
BsrI ACTGG 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 452, 642
BssMI GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
Bst2UI CCWGG 2 cut(s) 203, 572
Bst4CI ACNGT 5 cut(s) 24, 279, 608, 668, 695
Bst6I CTCTTC 1 cut(s) 591
BstDEI CTNAG 4 cut(s) 191, 326, 719, 753
BstDSI CCRYGG 1 cut(s) 452
BstF5I GGATG 2 cut(s) 109, 731
BstKTI GATC 9 cut(s) 55, 79, 99, 187, 261, 383, 391, 404, 568
BstMAI GTCTC 2 cut(s) 269, 330
BstMBI GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
BstMWI GCNNNNNNNGC 4 cut(s) 151, 660, 684, 749
BstNI CCWGG 2 cut(s) 203, 572
BstSCI CCNGG 3 cut(s) 125, 201, 570
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 2 cut(s) 134, 727
BstV2I GAAGAC 1 cut(s) 618
BstX2I RGATCY 5 cut(s) 52, 76, 258, 380, 401
BstYI RGATCY 5 cut(s) 52, 76, 258, 380, 401
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 3 cut(s) 154, 224, 451
BtgI CCRYGG 1 cut(s) 452
BtsCI GGATG 2 cut(s) 109, 731
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 2 cut(s) 472, 613
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 2 cut(s) 28, 449
Csp6I GTAC 1 cut(s) 510
CspAI ACCGGT 1 cut(s) 474
CviAII CATG 3 cut(s) 298, 547, 601
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 4 cut(s) 191, 326, 719, 753
DpnI GATC 9 cut(s) 54, 78, 98, 186, 260, 382, 390, 403, 567
DpnII GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
DraI TTTAAA 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
EciI GGCGGA 1 cut(s) 393
Ecl136II GAGCTC 2 cut(s) 332, 718
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 3 cut(s) 175, 334, 720
Eco47I GGWCC 1 cut(s) 28
Eco53kI GAGCTC 2 cut(s) 332, 718
Eco88I CYCGRG 2 cut(s) 333, 679
EcoICRI GAGCTC 2 cut(s) 332, 718
EcoRII CCWGG 2 cut(s) 201, 570
EcoT38I GRGCYC 3 cut(s) 175, 334, 720
FaeI CATG 3 cut(s) 301, 550, 604
FaiI YATR 6 cut(s) 216, 282, 299, 548, 602, 660
FatI CATG 3 cut(s) 297, 546, 600
Fnu4HI GCNGC 4 cut(s) 123, 655, 685, 741
FokI GGATG 2 cut(s) 116, 718
FriOI GRGCYC 3 cut(s) 175, 334, 720
Fsp4HI GCNGC 4 cut(s) 123, 655, 685, 741
FspBI CTAG 2 cut(s) 408, 507
GluI GCNGC 4 cut(s) 123, 655, 685, 741
GsuI CTGGAG 2 cut(s) 33, 185
HaeIII GGCC 3 cut(s) 154, 224, 451
HapII CCGG 4 cut(s) 126, 166, 475, 672
Hin1II CATG 3 cut(s) 301, 550, 604
HincII GTYRAC 2 cut(s) 460, 472
HindII GTYRAC 2 cut(s) 460, 472
HinfI GANTC 2 cut(s) 4, 195
HpaII CCGG 4 cut(s) 126, 166, 475, 672
HphI GGTGA 2 cut(s) 480, 560
Hpy166II GTNNAC 2 cut(s) 460, 472
Hpy188I TCNGA 5 cut(s) 273, 329, 363, 643, 736
Hpy188III TCNNGA 7 cut(s) 50, 74, 254, 319, 335, 386, 713
Hpy8I GTNNAC 2 cut(s) 460, 472
HpyAV CCTTC 3 cut(s) 101, 502, 527
HpyCH4III ACNGT 5 cut(s) 24, 279, 608, 668, 695
HpyCH4IV ACGT 2 cut(s) 303, 705
HpyCH4V TGCA 3 cut(s) 19, 465, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 660, 684, 749
HpyF3I CTNAG 4 cut(s) 191, 326, 719, 753
HpySE526I ACGT 2 cut(s) 303, 705
Hsp92II CATG 3 cut(s) 301, 550, 604
Kzo9I GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
LmnI GCTCC 2 cut(s) 178, 205
Lsp1109I GCAGC 2 cut(s) 134, 727
MaeI CTAG 2 cut(s) 408, 507
MaeII ACGT 2 cut(s) 303, 705
MalI GATC 9 cut(s) 54, 78, 98, 186, 260, 382, 390, 403, 567
MboI GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
MboII GAAGA 4 cut(s) 358, 575, 578, 623
MflI RGATCY 5 cut(s) 52, 76, 258, 380, 401
MhlI GDGCHC 3 cut(s) 175, 334, 720
MluCI AATT 4 cut(s) 60, 249, 357, 442
MmeI TCCRAC 2 cut(s) 6, 112
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 228, 356
MspI CCGG 4 cut(s) 126, 166, 475, 672
MspR9I CCNGG 3 cut(s) 127, 203, 572
MvaI CCWGG 2 cut(s) 203, 572
MwoI GCNNNNNNNGC 4 cut(s) 151, 660, 684, 749
NciI CCSGG 1 cut(s) 127
NdeII GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
NlaIII CATG 3 cut(s) 301, 550, 604
NlaIV GGNNCC 5 cut(s) 30, 78, 174, 317, 403
PaeR7I CTCGAG 1 cut(s) 333
PceI AGGCCT 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 201
PinAI ACCGGT 1 cut(s) 474
PkrI GCNGC 4 cut(s) 124, 656, 686, 742
Psp124BI GAGCTC 2 cut(s) 334, 720
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 2 cut(s) 201, 570
PspGI CCWGG 2 cut(s) 201, 570
PspN4I GGNNCC 5 cut(s) 30, 78, 174, 317, 403
PspPI GGNCC 2 cut(s) 28, 449
PstI CTGCAG 1 cut(s) 467
PsuI RGATCY 5 cut(s) 52, 76, 258, 380, 401
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SacI GAGCTC 2 cut(s) 334, 720
SaqAI TTAA 2 cut(s) 228, 356
SatI GCNGC 4 cut(s) 123, 655, 685, 741
Sau3AI GATC 9 cut(s) 52, 76, 96, 184, 258, 380, 388, 401, 565
Sau96I GGNCC 2 cut(s) 28, 449
ScaI AGTACT 1 cut(s) 511
ScrFI CCNGG 3 cut(s) 127, 203, 572
SduI GDGCHC 3 cut(s) 175, 334, 720
SfcI CTRYAG 1 cut(s) 463
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 333, 713
SmoI CTYRAG 2 cut(s) 333, 713
SpeI ACTAGT 2 cut(s) 407, 506
Sse9I AATT 4 cut(s) 60, 249, 357, 442
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 3 cut(s) 378, 654, 684
SspMI CTAG 2 cut(s) 408, 507
SstI GAGCTC 2 cut(s) 334, 720
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 3 cut(s) 125, 201, 570
TaaI ACNGT 5 cut(s) 24, 279, 608, 668, 695
TaiI ACGT 2 cut(s) 306, 708
TaqI TCGA 3 cut(s) 99, 334, 387
TasI AATT 4 cut(s) 60, 249, 357, 442
TatI WGTACW 1 cut(s) 509
TauI GCSGC 2 cut(s) 657, 687
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 228, 356
Tru9I TTAA 2 cut(s) 228, 356
TscAI CASTG 2 cut(s) 472, 613
TseI GCWGC 2 cut(s) 122, 740
TspDTI ATGAA 3 cut(s) 120, 314, 535
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 2 cut(s) 472, 613
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 2 cut(s) 60, 249
XhoI CTCGAG 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 2 cut(s) 408, 507
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.