Rorug06G0112900

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
15365386 .. 15367068
1683 bp
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UTR
Exon/CDS
Intron
Rorug06G0112900.1

Sequence Viewer

Length: 825 bp
ATGGGAATGAAGGGAGTGAGAAAAAACGTTTGCAAACGTGATGGAGATCTCTGGAGATCATACGAGGACGCTTGCAAGAATGAAAAGGATTTCCTAACTGAACTGGACAAGTTCCTAGAGTCATATAAGAAATGTTTGATTCAAATTAATGACGACGGAGGAATTGATGATGGTTACATGAGGATTTTGGAGAAATTGAAAAATGTCAAGGGGGCCTCAGGTAGAGTGTATGATCAGCAATGTGCATATCAAATTTTGCCCAGAAAGGTTGAATGTTTGTTGACGCAGCGACGAGATTTGCAAACAGAATTGAATGTCCGACTACAAAAGCCTCGCAAGAAGTATGATTGTACTCGTGCTTGGAGACGCTGTTTGAGGACGGTCACTCATATATTGTTCATTGGTGCTGCAGCTGCTGAGTTTGCCTGCACAGTTGTGGCCGCAGTTATGGCTGCTCCGCTTGTTGCACTGGCCATTGCTGCTGCTATTATCCCAACACTAGCCGGACAGCATTGGACTCTGTCTTGGATTGAAGATTCTGAAATTCCTGAGTATTCTGACTCTGTAATTCGCTTAATGCAATCCGGAACTGAGACTTCCATTGTGGATTTGCAACATATTCAGACGTATCTCTTTGCTGTTGTAGGGGGCATAGAATCACTCTTATCCCATCTCAATTCTGTGATTGAGGAAGATGAAGATATCAATATAAAAATTGTTGAGCGTCTTCTGAAGGACATTAATGAGTTGAAGGAAAGAGCAGGGAATAGCAAGTCCGAGATATTGGAGGCAAGCGATAAGGTTTCTAAGGAGATAAAAGAGTAA

Protein Analysis

274

Amino Acids

31.02

Weight (kDa)

5.95

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 53 - 267 1.9e-13 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 584
AciI CCGC 2 cut(s) 441, 458
AclI AACGTT 1 cut(s) 27
AcoI YGGCCR 2 cut(s) 438, 471
AcsI RAATTY 2 cut(s) 252, 543
AcuI CTGAAG 1 cut(s) 752
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 6 cut(s) 143, 199, 272, 313, 533, 751
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Alw26I GTCTC 2 cut(s) 358, 587
AlwNI CAGNNNCTG 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 584
AoxI GGCC 3 cut(s) 213, 438, 471
ApeKI GCWGC 7 cut(s) 286, 407, 410, 413, 452, 479, 482
ApoI RAATTY 2 cut(s) 252, 543
AseI ATTAAT 2 cut(s) 147, 741
AspS9I GGNCC 1 cut(s) 213
AxyI CCTNAGG 1 cut(s) 217
BalI TGGCCA 1 cut(s) 473
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 719
BbvI GCAGC 7 cut(s) 298, 394, 400, 422, 439, 466, 469
BccI CCATC 3 cut(s) 35, 164, 678
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 358, 587
BfaI CTAG 2 cut(s) 116, 500
BfmI CTRYAG 1 cut(s) 408
BglII AGATCT 1 cut(s) 46
BisI GCNGC 8 cut(s) 287, 408, 411, 414, 441, 453, 480, 483
BlsI GCNGC 8 cut(s) 288, 409, 412, 415, 442, 454, 481, 484
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 719
BpmI CTGGAG 1 cut(s) 73
BsaBI GATNNNNATC 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 584
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bse1I ACTGG 2 cut(s) 108, 474
Bse21I CCTNAGG 1 cut(s) 217
Bse3DI GCAATG 2 cut(s) 245, 474
Bse8I GATNNNNATC 1 cut(s) 45
BseAI TCCGGA 1 cut(s) 584
BseJI GATNNNNATC 1 cut(s) 45
BseMI GCAATG 2 cut(s) 245, 474
BseMII CTCAG 4 cut(s) 231, 408, 540, 582
BseNI ACTGG 2 cut(s) 108, 474
BseXI GCAGC 7 cut(s) 298, 394, 400, 422, 439, 466, 469
BsgI GTGCAG 1 cut(s) 412
BshFI GGCC 3 cut(s) 215, 440, 473
BsiSI CCGG 2 cut(s) 504, 585
BsmAI GTCTC 2 cut(s) 358, 587
BsmBI CGTCTC 1 cut(s) 358
BsnI GGCC 3 cut(s) 215, 440, 473
Bsp13I TCCGGA 1 cut(s) 584
Bsp143I GATC 3 cut(s) 46, 56, 232
BspACI CCGC 2 cut(s) 441, 458
BspANI GGCC 3 cut(s) 215, 440, 473
BspCNI CTCAG 4 cut(s) 230, 409, 541, 583
BspEI TCCGGA 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 412
BsrDI GCAATG 2 cut(s) 245, 474
BsrI ACTGG 2 cut(s) 108, 474
BssMI GATC 3 cut(s) 46, 56, 232
BssSI CACGAG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 382, 433
BstC8I GCNNGC 3 cut(s) 73, 427, 793
BstDEI CTNAG 5 cut(s) 217, 417, 549, 591, 807
BstKTI GATC 3 cut(s) 49, 59, 235
BstMAI GTCTC 2 cut(s) 358, 587
BstMBI GATC 3 cut(s) 46, 56, 232
BstMWI GCNNNNNNNGC 4 cut(s) 413, 422, 449, 479
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 7 cut(s) 298, 394, 400, 422, 439, 466, 469
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 217
BsuRI GGCC 3 cut(s) 215, 440, 473
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 3 cut(s) 73, 427, 793
CaiI CAGNNNCTG 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 4 cut(s) 77, 292, 375, 713
Csp6I GTAC 1 cut(s) 351
CviAII CATG 1 cut(s) 178
CviJI RGCY 7 cut(s) 215, 331, 413, 440, 452, 473, 503
CviKI_1 RGCY 7 cut(s) 215, 331, 413, 440, 452, 473, 503
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 5 cut(s) 217, 417, 549, 591, 807
DpnI GATC 3 cut(s) 48, 58, 234
DpnII GATC 3 cut(s) 46, 56, 232
EaeI YGGCCR 2 cut(s) 438, 471
Eco32I GATATC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 752
Eco81I CCTNAGG 1 cut(s) 217
EcoO109I RGGNCCY 1 cut(s) 213
EcoRV GATATC 1 cut(s) 703
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 1 cut(s) 181
FatI CATG 1 cut(s) 177
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 8 cut(s) 287, 408, 411, 414, 441, 453, 480, 483
Fsp4HI GCNGC 8 cut(s) 287, 408, 411, 414, 441, 453, 480, 483
FspBI CTAG 2 cut(s) 116, 500
GluI GCNGC 8 cut(s) 287, 408, 411, 414, 441, 453, 480, 483
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 3 cut(s) 215, 440, 473
HapII CCGG 2 cut(s) 504, 585
HgaI GACGC 4 cut(s) 77, 292, 375, 713
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 6 cut(s) 119, 139, 517, 536, 560, 656
HpaII CCGG 2 cut(s) 504, 585
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 6 cut(s) 320, 541, 559, 624, 732, 778
Hpy188III TCNNGA 3 cut(s) 52, 548, 585
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 2 cut(s) 158, 294
HpyAV CCTTC 3 cut(s) 4, 727, 745
HpyCH4III ACNGT 2 cut(s) 382, 433
HpyCH4IV ACGT 3 cut(s) 27, 37, 626
HpyCH4V TGCA 9 cut(s) 33, 75, 245, 301, 410, 429, 467, 580, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 422, 449, 479
HpyF3I CTNAG 5 cut(s) 217, 417, 549, 591, 807
HpySE526I ACGT 3 cut(s) 27, 37, 626
Hsp92II CATG 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 584
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 46, 56, 232
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 7 cut(s) 298, 394, 400, 422, 439, 466, 469
MaeI CTAG 2 cut(s) 116, 500
MaeII ACGT 3 cut(s) 27, 37, 626
MaeIII GTNAC 2 cut(s) 173, 382
MalI GATC 3 cut(s) 48, 58, 234
MboI GATC 3 cut(s) 46, 56, 232
MboII GAAGA 4 cut(s) 545, 704, 710, 719
MflI RGATCY 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 9 cut(s) 144, 162, 194, 252, 308, 543, 567, 676, 714
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 3 cut(s) 128, 511, 554
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 8 cut(s) 58, 152, 174, 226, 342, 369, 682, 781
Mox20I TGGCCA 1 cut(s) 473
MroI TCCGGA 1 cut(s) 584
MscI TGGCCA 1 cut(s) 473
MseI TTAA 3 cut(s) 147, 575, 741
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 2 cut(s) 504, 585
MwoI GCNNNNNNNGC 4 cut(s) 413, 422, 449, 479
NdeII GATC 3 cut(s) 46, 56, 232
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 434
PfeI GAWTC 3 cut(s) 139, 536, 656
PflFI GACNNNGTC 1 cut(s) 520
PkrI GCNGC 8 cut(s) 288, 409, 412, 415, 442, 454, 481, 484
PleI GAGTC 3 cut(s) 127, 511, 554
PpsI GAGTC 3 cut(s) 127, 511, 554
PshBI ATTAAT 2 cut(s) 147, 741
Psp1406I AACGTT 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 520
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 3 cut(s) 147, 575, 741
SatI GCNGC 8 cut(s) 287, 408, 411, 414, 441, 453, 480, 483
Sau3AI GATC 3 cut(s) 46, 56, 232
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 3 cut(s) 128, 511, 554
SetI ASST 7 cut(s) 30, 40, 223, 270, 415, 629, 804
SfcI CTRYAG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 434
Sse9I AATT 9 cut(s) 144, 162, 194, 252, 308, 543, 567, 676, 714
SsiI CCGC 2 cut(s) 441, 458
SspMI CTAG 2 cut(s) 116, 500
TaaI ACNGT 2 cut(s) 382, 433
TaiI ACGT 3 cut(s) 30, 40, 629
TasI AATT 9 cut(s) 144, 162, 194, 252, 308, 543, 567, 676, 714
TatI WGTACW 1 cut(s) 350
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 3 cut(s) 139, 536, 656
Tru1I TTAA 3 cut(s) 147, 575, 741
Tru9I TTAA 3 cut(s) 147, 575, 741
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 7 cut(s) 286, 407, 410, 413, 452, 479, 482
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 4 cut(s) 23, 96, 388, 711
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 520
VspI ATTAAT 2 cut(s) 147, 741
XapI RAATTY 2 cut(s) 252, 543
XspI CTAG 2 cut(s) 116, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.